Atanas Kamburov

Atanas Kamburov

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Atanas Kamburov

Atanas Kamburov

Publications by authors named "Atanas Kamburov"

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36Publications

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Comparison of algorithms for the detection of cancer drivers at subgene resolution.

Nat Methods 2017 Aug 17;14(8):782-788. Epub 2017 Jul 17.

Sanford Burnham Prebys Medical Discovery Institute, La Jolla, California, USA.

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http://dx.doi.org/10.1038/nmeth.4364DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5935266PMC
August 2017

Analyzing and interpreting genome data at the network level with ConsensusPathDB.

Nat Protoc 2016 10 8;11(10):1889-907. Epub 2016 Sep 8.

Department of Pathology and Cancer Center, Massachusetts General Hospital, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1038/nprot.2016.117DOI Listing
October 2016

Mutational Strand Asymmetries in Cancer Genomes Reveal Mechanisms of DNA Damage and Repair.

Cell 2016 Jan 21;164(3):538-49. Epub 2016 Jan 21.

Massachusetts General Hospital Cancer Center and Department of Pathology, 55 Fruit Street, Boston, MA 02114, USA; Broad Institute of Harvard and MIT, 415 Main Street, Cambridge, MA 02142, USA; Harvard Medical School, 25 Shattuck Street, Boston, MA 02115, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2015.12.050DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4753048PMC
January 2016

Comprehensive assessment of cancer missense mutation clustering in protein structures.

Proc Natl Acad Sci U S A 2015 Oct 21;112(40):E5486-95. Epub 2015 Sep 21.

Department of Pathology and Cancer Center, Massachusetts General Hospital, Boston, MA 02114; Harvard Medical School, Boston, MA 02115; Broad Institute of MIT and Harvard, Cambridge, MA 02142;

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http://dx.doi.org/10.1073/pnas.1516373112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4603469PMC
October 2015

A proteome-scale map of the human interactome network.

Cell 2014 Nov;159(5):1212-1226

Center for Cancer Systems Biology (CCSB) and Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA; Department of Genetics, Harvard Medical School, Boston, MA 02115, USA. Electronic address:

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http://llama.mshri.on.ca/publications/Rolland_Cell_2014.pdf
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http://linkinghub.elsevier.com/retrieve/pii/S009286741401422
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http://dx.doi.org/10.1016/j.cell.2014.10.050DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4266588PMC
November 2014

Dual coordination of post translational modifications in human protein networks.

PLoS Comput Biol 2013 7;9(3):e1002933. Epub 2013 Mar 7.

Otto-Warburg Laboratory, Max Planck Institute for Molecular Genetics (MPIMG), Berlin, Germany.

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http://dx.doi.org/10.1371/journal.pcbi.1002933DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3591266PMC
November 2013

The ConsensusPathDB interaction database: 2013 update.

Nucleic Acids Res 2013 Jan 11;41(Database issue):D793-800. Epub 2012 Nov 11.

Department of Vertebrate Genomics, Max Planck Institute for Molecular Genetics, Ihnestrasse 63-73, 14195 Berlin, Germany.

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http://dx.doi.org/10.1093/nar/gks1055DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531102PMC
January 2013

Cluster-based assessment of protein-protein interaction confidence.

BMC Bioinformatics 2012 Oct 10;13:262. Epub 2012 Oct 10.

Department of Vertebrate Genomics, Max Planck Institute for Molecular Genetics, 14195 Berlin, Ihnestr, 63-73, Germany.

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http://dx.doi.org/10.1186/1471-2105-13-262DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3532186PMC
October 2012

Construction of a pig physical interactome using sequence homology and a comprehensive reference human interactome.

Evol Bioinform Online 2012 24;8:119-26. Epub 2012 Jan 24.

Department of Vertebrate Genomics, Max Planck Institute for Molecular Genetics, Ihnestr. 63-73, 14195 Berlin, Germany.

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http://dx.doi.org/10.4137/EBO.S8552DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3273931PMC
August 2012

IntScore: a web tool for confidence scoring of biological interactions.

Nucleic Acids Res 2012 Jul 30;40(Web Server issue):W140-6. Epub 2012 May 30.

Vertebrate Genomics Department and Otto-Warburg Laboratory, Max Planck Institute for Molecular Genetics, Ihnestrasse 63-73, 14195 Berlin, Germany.

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http://dx.doi.org/10.1093/nar/gks492DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3394291PMC
July 2012

DIPSBC--data integration platform for systems biology collaborations.

BMC Bioinformatics 2012 May 8;13:85. Epub 2012 May 8.

Department of Vertebrate Genomics, Max Planck Institute for Molecular Genetics, Ihnestr. 63-73, 14195 Berlin, Germany.

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http://dx.doi.org/10.1186/1471-2105-13-85DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3424966PMC
May 2012

Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA.

Bioinformatics 2011 Oct 4;27(20):2917-8. Epub 2011 Sep 4.

Department of Vertebrate Genomics, Max Planck Institute for Molecular Genetics, Berlin, Germany.

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http://dx.doi.org/10.1093/bioinformatics/btr499DOI Listing
October 2011

Consensus-phenotype integration of transcriptomic and metabolomic data implies a role for metabolism in the chemosensitivity of tumour cells.

PLoS Comput Biol 2011 Mar 31;7(3):e1001113. Epub 2011 Mar 31.

Biomolecular Medicine, Department of Surgery and Cancer, Faculty of Medicine, Imperial College London, London, United Kingdom.

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http://dx.doi.org/10.1371/journal.pcbi.1001113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3068923PMC
March 2011

ConsensusPathDB: toward a more complete picture of cell biology.

Nucleic Acids Res 2011 Jan 11;39(Database issue):D712-7. Epub 2010 Nov 11.

Vertebrate Genomics Department, Max Planck Institute for Molecular Genetics, Ihnestr 63-73, 14195 Berlin, Germany.

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http://dx.doi.org/10.1093/nar/gkq1156DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013724PMC
January 2011

Evidence mining and novelty assessment of protein-protein interactions with the ConsensusPathDB plugin for Cytoscape.

Bioinformatics 2010 Nov 16;26(21):2796-7. Epub 2010 Sep 16.

Department of Vertebrate Genomics, Max Planck Institute for Molecular Genetics, Ihnestrasse 63-73, Berlin, Germany.

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http://dx.doi.org/10.1093/bioinformatics/btq522DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2958747PMC
November 2010

ConsensusPathDB--a database for integrating human functional interaction networks.

Nucleic Acids Res 2009 Jan 21;37(Database issue):D623-8. Epub 2008 Oct 21.

Max Planck Institute for Molecular Genetics, Ihnestr. 63-73, 14195 Berlin, Germany.

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http://dx.doi.org/10.1093/nar/gkn698DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686562PMC
January 2009

Denoising inferred functional association networks obtained by gene fusion analysis.

BMC Genomics 2007 Dec 14;8:460. Epub 2007 Dec 14.

Computational Genomics Group, The European Bioinformatics Institute, EMBL Cambridge Outstation, Cambridge CB10 1SD, UK.

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http://dx.doi.org/10.1186/1471-2164-8-460DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2248599PMC
December 2007