Publications by authors named "Atanas Kamburov"

37 Publications

Comparison of algorithms for the detection of cancer drivers at subgene resolution.

Nat Methods 2017 Aug 17;14(8):782-788. Epub 2017 Jul 17.

Sanford Burnham Prebys Medical Discovery Institute, La Jolla, California, USA.

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August 2017

Analyzing and interpreting genome data at the network level with ConsensusPathDB.

Nat Protoc 2016 10 8;11(10):1889-907. Epub 2016 Sep 8.

Department of Pathology and Cancer Center, Massachusetts General Hospital, Boston, Massachusetts, USA.

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October 2016

Mutational Strand Asymmetries in Cancer Genomes Reveal Mechanisms of DNA Damage and Repair.

Cell 2016 Jan 21;164(3):538-49. Epub 2016 Jan 21.

Massachusetts General Hospital Cancer Center and Department of Pathology, 55 Fruit Street, Boston, MA 02114, USA; Broad Institute of Harvard and MIT, 415 Main Street, Cambridge, MA 02142, USA; Harvard Medical School, 25 Shattuck Street, Boston, MA 02115, USA. Electronic address:

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January 2016

Comprehensive assessment of cancer missense mutation clustering in protein structures.

Proc Natl Acad Sci U S A 2015 Oct 21;112(40):E5486-95. Epub 2015 Sep 21.

Department of Pathology and Cancer Center, Massachusetts General Hospital, Boston, MA 02114; Harvard Medical School, Boston, MA 02115; Broad Institute of MIT and Harvard, Cambridge, MA 02142;

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October 2015

Dual coordination of post translational modifications in human protein networks.

PLoS Comput Biol 2013 7;9(3):e1002933. Epub 2013 Mar 7.

Otto-Warburg Laboratory, Max Planck Institute for Molecular Genetics (MPIMG), Berlin, Germany.

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November 2013

The ConsensusPathDB interaction database: 2013 update.

Nucleic Acids Res 2013 Jan 11;41(Database issue):D793-800. Epub 2012 Nov 11.

Department of Vertebrate Genomics, Max Planck Institute for Molecular Genetics, Ihnestrasse 63-73, 14195 Berlin, Germany.

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January 2013

Cluster-based assessment of protein-protein interaction confidence.

BMC Bioinformatics 2012 Oct 10;13:262. Epub 2012 Oct 10.

Department of Vertebrate Genomics, Max Planck Institute for Molecular Genetics, 14195 Berlin, Ihnestr, 63-73, Germany.

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October 2012

IntScore: a web tool for confidence scoring of biological interactions.

Nucleic Acids Res 2012 Jul 30;40(Web Server issue):W140-6. Epub 2012 May 30.

Vertebrate Genomics Department and Otto-Warburg Laboratory, Max Planck Institute for Molecular Genetics, Ihnestrasse 63-73, 14195 Berlin, Germany.

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July 2012

DIPSBC--data integration platform for systems biology collaborations.

BMC Bioinformatics 2012 May 8;13:85. Epub 2012 May 8.

Department of Vertebrate Genomics, Max Planck Institute for Molecular Genetics, Ihnestr. 63-73, 14195 Berlin, Germany.

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May 2012

Construction of a pig physical interactome using sequence homology and a comprehensive reference human interactome.

Evol Bioinform Online 2012 24;8:119-26. Epub 2012 Jan 24.

Department of Vertebrate Genomics, Max Planck Institute for Molecular Genetics, Ihnestr. 63-73, 14195 Berlin, Germany.

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August 2012

Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA.

Bioinformatics 2011 Oct 4;27(20):2917-8. Epub 2011 Sep 4.

Department of Vertebrate Genomics, Max Planck Institute for Molecular Genetics, Berlin, Germany.

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October 2011