Publications by authors named "Astrid Gall"

37Publications

Ensembl 2020.

Nucleic Acids Res 2020 01;48(D1):D682-D688

European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

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http://dx.doi.org/10.1093/nar/gkz966DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7145704PMC
January 2020

The evolution of subtype B HIV-1 tat in the Netherlands during 1985-2012.

Virus Res 2018 05 11;250:51-64. Epub 2018 Apr 11.

Laboratory of Experimental Virology, Department of Medical Microbiology, Academic Medical Center, University of Amsterdam, Meibergdreef 15, 1105 AZ, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1016/j.virusres.2018.04.008DOI Listing
May 2018

Workup of Human Blood Samples for Deep Sequencing of HIV-1 Genomes.

Methods Mol Biol 2018 ;1746:55-61

Laboratory of Experimental Virology, Department of Medical Microbiology, Center for Infection and Immunity Amsterdam (CINIMA), Academic Medical Center of the University of Amsterdam, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1007/978-1-4939-7683-6_5DOI Listing
February 2019

PHYLOSCANNER: Inferring Transmission from Within- and Between-Host Pathogen Genetic Diversity.

Mol Biol Evol 2018 Mar;35(3):719-733

Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, Nuffield Department of Medicine, University of Oxford, United Kingdom.

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http://dx.doi.org/10.1093/molbev/msx304DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5850600PMC
March 2018

From clinical sample to complete genome: Comparing methods for the extraction of HIV-1 RNA for high-throughput deep sequencing.

Virus Res 2017 07 4;239:10-16. Epub 2016 Aug 4.

Laboratory of Experimental Virology, Department of Medical Microbiology, Center for Infection and Immunity Amsterdam (CINIMA), Academic Medical Center of the University of Amsterdam, Meibergdreef 15, 1105 AZ Amsterdam, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.virusres.2016.08.004DOI Listing
July 2017

Coalescent Inference Using Serially Sampled, High-Throughput Sequencing Data from Intrahost HIV Infection.

Genetics 2016 Apr 8;202(4):1449-72. Epub 2016 Feb 8.

Department of Statistics, University of Warwick, Coventry, United Kingdom Department of Computer Science, University of Warwick, Coventry, United Kingdom

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http://dx.doi.org/10.1534/genetics.115.177931DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4905535PMC
April 2016

Viral fossils.

Authors:
Astrid Gall

Nat Rev Microbiol 2016 Feb 30;14(2):66. Epub 2015 Dec 30.

Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.

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http://dx.doi.org/10.1038/nrmicro.2015.22DOI Listing
February 2016

Disease progression despite protective HLA expression in an HIV-infected transmission pair.

Retrovirology 2015 Jun 30;12:55. Epub 2015 Jun 30.

Nuffield Department of Medicine, Peter Medawar Building for Pathogen Research, University of Oxford, Oxford, OX1 3SY, UK.

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http://dx.doi.org/10.1186/s12977-015-0179-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4487201PMC
June 2015

Bugs full of viruses.

Authors:
Astrid Gall

Nat Rev Microbiol 2015 May 13;13(5):253. Epub 2015 Apr 13.

Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.

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http://dx.doi.org/10.1038/nrmicro3479DOI Listing
May 2015

IVA: accurate de novo assembly of RNA virus genomes.

Bioinformatics 2015 Jul 28;31(14):2374-6. Epub 2015 Feb 28.

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK.

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http://dx.doi.org/10.1093/bioinformatics/btv120DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4495290PMC
July 2015

Host genetic variants and gene expression patterns associated with Epstein-Barr virus copy number in lymphoblastoid cell lines.

PLoS One 2014 7;9(10):e108384. Epub 2014 Oct 7.

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom; Department of Infection, Division of Infection and Immunity, University College London, London, United Kingdom.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0108384PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4188571PMC
June 2015

Complete Genome Sequence of the WHO International Standard for HIV-1 RNA Determined by Deep Sequencing.

Genome Announc 2014 Feb 6;2(1). Epub 2014 Feb 6.

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.

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http://genomea.asm.org/cgi/doi/10.1128/genomeA.01254-13
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http://dx.doi.org/10.1128/genomeA.01254-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3916492PMC
February 2014

An elephantine viral problem.

Nat Rev Microbiol 2013 Aug 8;11(8):512. Epub 2013 Jul 8.

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http://dx.doi.org/10.1038/nrmicro3075DOI Listing
August 2013

Universal amplification, next-generation sequencing, and assembly of HIV-1 genomes.

J Clin Microbiol 2012 Dec 19;50(12):3838-44. Epub 2012 Sep 19.

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.

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http://jcm.asm.org/cgi/doi/10.1128/JCM.01516-12
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http://dx.doi.org/10.1128/JCM.01516-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3502977PMC
December 2012

Economic high-throughput-identification of influenza A subtypes from clinical specimens with a DNA-oligonucleotide microarray in an outbreak situation.

Mol Cell Probes 2012 Feb 17;26(1):6-10. Epub 2011 Oct 17.

Institute for Medical Diagnostics Oderland, Frankfurt (Oder), Germany.

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http://dx.doi.org/10.1016/j.mcp.2011.10.003DOI Listing
February 2012

Disease-associated XMRV sequences are consistent with laboratory contamination.

Retrovirology 2010 Dec 20;7(1):111. Epub 2010 Dec 20.

MRC Centre for Medical Molecular Virology, Division of Infection and Immunity, University College London, 46 Cleveland St, London W1T 4JF, UK.

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http://dx.doi.org/10.1186/1742-4690-7-111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3018392PMC
December 2010

Rapid and highly sensitive neuraminidase subtyping of avian influenza viruses by use of a diagnostic DNA microarray.

J Clin Microbiol 2009 Sep 8;47(9):2985-8. Epub 2009 Jul 8.

Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493 Greifswald-Insel Riems, Germany.

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http://dx.doi.org/10.1128/JCM.00850-09DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2738067PMC
September 2009

Rapid haemagglutinin subtyping and pathotyping of avian influenza viruses by a DNA microarray.

J Virol Methods 2009 Sep 15;160(1-2):200-5. Epub 2009 May 15.

Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Greifswald - Insel Riems, Germany.

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http://dx.doi.org/10.1016/j.jviromet.2009.05.004DOI Listing
September 2009

Design and validation of a microarray for detection, hemagglutinin subtyping, and pathotyping of avian influenza viruses.

J Clin Microbiol 2009 Feb 3;47(2):327-34. Epub 2008 Dec 3.

Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Greifswald-Insel Riems, Germany.

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http://dx.doi.org/10.1128/JCM.01330-08DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2643657PMC
February 2009

Universal primer set for amplification and sequencing of HA0 cleavage sites of all influenza A viruses.

J Clin Microbiol 2008 Aug 18;46(8):2561-7. Epub 2008 Jun 18.

Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493 Greifswald-Insel Riems, Germany.

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http://dx.doi.org/10.1128/JCM.00466-08DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2519470PMC
August 2008