Ashwini Patil

Ashwini Patil

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Ashwini Patil

Ashwini Patil

Publications by authors named "Ashwini Patil"

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35Publications

239Reads

TimeXNet Web: identifying cellular response networks from diverse omics time-course data.

Bioinformatics 2018 Nov;34(21):3764-3765

Human Genome Center, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan.

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November 2018

Ruptured Posterior Circulation Aneurysms with Bilateral Internal Carotid Artery Occlusion: Surgical Nuance.

Asian J Neurosurg 2018 Oct-Dec;13(4):1008-1010

Department of Internal Medicine, Seth Gordhandas Sunderdas Medical College and King Edward Memorial Hospital, Mumbai, Maharashtra, India.

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November 2018

OPAL+: Length-Specific MoRF Prediction in Intrinsically Disordered Protein Sequences.

Proteomics 2018 Oct 15:e1800058. Epub 2018 Oct 15.

Human Genome Center, The Institute of Medical Science, The University of Tokyo, Tokyo, 108-8639, Japan.

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October 2018

OPAL: prediction of MoRF regions in intrinsically disordered protein sequences.

Bioinformatics 2018 Jun;34(11):1850-1858

School of Engineering and Physics, The University of the South Pacific, Suva, Fiji.

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June 2018

MoRFPred-plus: Computational Identification of MoRFs in Protein Sequences using Physicochemical Properties and HMM profiles.

J Theor Biol 2018 Jan 16;437:9-16. Epub 2017 Oct 16.

Department of Engineering and Physics, the University of the South Pacific, Suva, Fiji; CREST, JST, Yokohama 230-0045, Japan; RIKEN Center for Integrative Medical Science, Yokohama 230-0045, Japan; Griffith University, Australia. Electronic address:

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January 2018

Organism-Level Analysis of Vaccination Reveals Networks of Protection across Tissues.

Cell 2017 Oct 21;171(2):398-413.e21. Epub 2017 Sep 21.

Faculty of Arts & Sciences Center for Systems Biology, Harvard University, Cambridge, MA 02138, USA. Electronic address:

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October 2017

Chronic Cigarette Smoke-Induced Epigenomic Changes Precede Sensitization of Bronchial Epithelial Cells to Single-Step Transformation by KRAS Mutations.

Cancer Cell 2017 09;32(3):360-376.e6

Department of Oncology, The Sidney Kimmel Comprehensive Cancer Center, The Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA. Electronic address:

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September 2017

Comparative Evaluation of Oxidative Stress Modulating and DNA Protective Activities of Aqueous and Methanolic Extracts of Acacia catechu.

Medicines (Basel) 2017 Sep 5;4(3). Epub 2017 Sep 5.

Department of Zoology, Sir Parashurambhau College, Pune 411030, Maharashtra, India.

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September 2017

Predicting MoRFs in protein sequences using HMM profiles.

BMC Bioinformatics 2016 Dec 22;17(Suppl 19):504. Epub 2016 Dec 22.

School of Engineering and Physics, The University of the South Pacific, Suva, Fiji.

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December 2016

HitPredict version 4: comprehensive reliability scoring of physical protein-protein interactions from more than 100 species.

Database (Oxford) 2015 26;2015. Epub 2015 Dec 26.

Human Genome Center, The Institute of Medical Science, The University of Tokyo, Tokyo 108-8639, Japan

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August 2016

Recent advancement in discovery and development of natural product combretastatin-inspired anticancer agents.

Anticancer Agents Med Chem 2015 ;15(8):955-69

Department of Pharmaceutical Chemistry, H. R. Patel Institute of Pharmaceutical Education and Research, Shirpur, District, Dhule -425405, Maharashtra, India.

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June 2016

Discovery of Intermediary Genes between Pathways Using Sparse Regression.

PLoS One 2015 8;10(9):e0137222. Epub 2015 Sep 8.

Institute of Medical Science, The University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan.

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May 2016

Methods for protein complex prediction and their contributions towards understanding the organisation, function and dynamics of complexes.

FEBS Lett 2015 Sep 23;589(19 Pt A):2590-602. Epub 2015 Apr 23.

Department of Computer Science, National University of Singapore, Singapore 117417, Singapore.

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September 2015

Evaluation of sequence features from intrinsically disordered regions for the estimation of protein function.

PLoS One 2014 24;9(2):e89890. Epub 2014 Feb 24.

Human Genome Center, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan.

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January 2015

A rare case of foreign body causing recurrent vaginal discharge in prepubertal child.

J Clin Diagn Res 2015 Jan 1;9(1):QD03-4. Epub 2015 Jan 1.

Senior Resident, Department of Orthopaedics, Shri B.M.Patil Medical College Hospital & Research Centre , Bijapur, Karnataka, India .

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January 2015

Linking transcriptional changes over time in stimulated dendritic cells to identify gene networks activated during the innate immune response.

PLoS Comput Biol 2013 7;9(11):e1003323. Epub 2013 Nov 7.

The Institute of Medical Science, The University of Tokyo, Tokyo, Japan.

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July 2014

Innate immunity interactome dynamics.

Gene Regul Syst Bio 2014 Jan 6;8:1-15. Epub 2014 Jan 6.

Institute of Medical Science, The University of Tokyo, Minato-ku, Tokyo, Japan. ; Graduate school of Frontier Sciences, The University of Tokyo, Kashiwa-shi, Chiba, Japan.

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January 2014

Functional annotation of intrinsically disordered domains by their amino acid content using IDD Navigator.

Pac Symp Biocomput 2012 :164-75

Human Genome Center, Institute of Medical Science, University of Tokyo, Tokyo, Japan.

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December 2013

No carious cervical lesions: abfraction.

J Int Oral Health 2013 Oct 26;5(5):143-6. Epub 2013 Oct 26.

Department of Pedodontics and Preventive Dentistry, SGT Dental College Hospital & Research Institute, Budhera, Gurgaon, Haryana, India.

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October 2013

Chemical composition is maintained in poorly conserved intrinsically disordered regions and suggests a means for their classification.

Mol Biosyst 2012 Oct;8(12):3262-73

Human Genome Center, The Institute of Medical Science, The University of Tokyo, 4-6-1 Shirokanedai, Tokyo 108-8639, Japan.

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October 2012

Sequence- and species-dependence of proteasomal processivity.

ACS Chem Biol 2012 Aug 28;7(8):1444-53. Epub 2012 Jun 28.

Department of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA.

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August 2012

Assessing the utility of gene co-expression stability in combination with correlation in the analysis of protein-protein interaction networks.

BMC Genomics 2011 Nov 30;12 Suppl 3:S19. Epub 2011 Nov 30.

Human Genome Center, Institute of Medical Science, The University of Tokyo, 4-6-1 Shirokane-dai, Minato-ku, Tokyo 108-8639, Japan.

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November 2011

HitPredict: a database of quality assessed protein-protein interactions in nine species.

Nucleic Acids Res 2011 Jan 14;39(Database issue):D744-9. Epub 2010 Oct 14.

Human Genome Center, The Institute of Medical Science, The University of Tokyo, 4-6-1 Shirokane-dai, Minato-ku, Tokyo 108-8639, Japan.

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January 2011

Intrinsically disordered domains deviate significantly from random sequences in mammalian proteins.

BMC Bioinformatics 2010 Oct 15;11 Suppl 7:S7. Epub 2010 Oct 15.

Laboratory of Host Defense, WPI Immunology Frontier Research Center (IFReC), Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan.

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October 2010

Domain distribution and intrinsic disorder in hubs in the human protein-protein interaction network.

Protein Sci 2010 Aug;19(8):1461-8

Human Genome Center, Institute of Medical Science, The University of Tokyo, 4-6-1 Shirokane-dai, Minato-ku, Tokyo 108-8639, Japan.

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August 2010

Hub promiscuity in protein-protein interaction networks.

Int J Mol Sci 2010 Apr 26;11(4):1930-43. Epub 2010 Apr 26.

Human Genome Center, Institute of Medical Science, The University of Tokyo, Minato-ku, Japan.

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April 2010

The role of charged surface residues in the binding ability of small hubs in protein-protein interaction networks.

Biophysics (Nagoya-shi) 2007 21;3:27-35. Epub 2007 Jul 21.

Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka 565-0871, Japan.

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July 2007

Use of transcriptional synergy to augment sensitivity of a splicing reporter assay.

RNA 2006 May 23;12(5):925-30. Epub 2006 Mar 23.

Department of Biochemistry, UT Southwestern Medical Center, Dallas, Texas 75390-9038, USA

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May 2006

Disordered domains and high surface charge confer hubs with the ability to interact with multiple proteins in interaction networks.

FEBS Lett 2006 Apr 10;580(8):2041-5. Epub 2006 Mar 10.

Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka 565-0871, Japan.

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April 2006

Filtering high-throughput protein-protein interaction data using a combination of genomic features.

BMC Bioinformatics 2005 Apr 18;6:100. Epub 2005 Apr 18.

Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka 565-0871, Japan.

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April 2005

HINT: a database of annotated protein-protein interactions and their homologs.

Biophysics (Nagoya-shi) 2005 28;1:21-24. Epub 2005 Feb 28.

Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka 565-0871, Japan.

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February 2005