Arvind Rao

Arvind Rao

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Arvind Rao

Publications by authors named "Arvind Rao"

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Predictors of Radiation-Induced Liver Disease in Eastern and Western Patients With Hepatocellular Carcinoma Undergoing Proton Beam Therapy.

Int J Radiat Oncol Biol Phys 2019 Sep 21;105(1):73-86. Epub 2019 Feb 21.

Department of Radiation Oncology, Chang Gung Memorial Hospital, Linkou and College of Medicine, Chang Gung University, Taoyuan City, Taiwan, China; Department of Institute for Radiological Research, Chang Gung Memorial Hospital, Linkou and College of Medicine, Chang Gung University, Taoyuan City, Taiwan, China. Electronic address:

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http://dx.doi.org/10.1016/j.ijrobp.2019.02.032DOI Listing
September 2019

DDAP: docking domain affinity and biosynthetic pathway prediction tool for type I polyketide synthases.

Bioinformatics 2019 Sep 3. Epub 2019 Sep 3.

Department of Computational Medicine and Bioinformatics, Ann Arbor, Michigan, USA.

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http://dx.doi.org/10.1093/bioinformatics/btz677DOI Listing
September 2019

Engineered 3D Model of Cancer Stem Cell Enrichment and Chemoresistance.

Neoplasia 2019 Aug 9;21(8):822-836. Epub 2019 Jul 9.

Department of Materials Science and Engineering, University of Michigan, Ann Arbor, MI, USA; Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI, USA; Rogel Cancer Center, University of Michigan, Ann Arbor, MI, USA; Macromolecular Science and Engineering, University of Michigan, Ann Arbor, MI, USA.. Electronic address:

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http://dx.doi.org/10.1016/j.neo.2019.06.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6624324PMC
August 2019

Prediction of 1p/19q Codeletion in Diffuse Glioma Patients Using Pre-operative Multiparametric Magnetic Resonance Imaging.

Front Comput Neurosci 2019 30;13:52. Epub 2019 Jul 30.

Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, United States.

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http://dx.doi.org/10.3389/fncom.2019.00052DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6682685PMC
July 2019

Leveraging Image-Derived Phenotypic Measurements for Drug-Target Interaction Predictions.

Cancer Inform 2019 12;18:1176935119856595. Epub 2019 Jun 12.

Department of Electrical and Computer Engineering, Rice University, Houston, TX, USA.

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http://dx.doi.org/10.1177/1176935119856595DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6563400PMC
June 2019

Erratum: "The utility of quantitative CT radiomics features for improved prediction of radiation pneumonitis" [Med. Phys. Vol. 45(11):5317-5324 (2018)].

Med Phys 2019 Feb 2;46(2):1079. Epub 2019 Jan 2.

Department of Radiation Physics, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.

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http://dx.doi.org/10.1002/mp.13327DOI Listing
February 2019

Development of sodium fluoride PET response criteria for solid tumours (NAFCIST) in a clinical trial of radium-223 in osteosarcoma: from RECIST to PERCIST to NAFCIST.

ESMO Open 2019 28;4(1):e000439. Epub 2019 Feb 28.

Department of Investigational Cancer Therapeutics, Division of Cancer Medicine and Division of Pediatrics, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.

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http://dx.doi.org/10.1136/esmoopen-2018-000439DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6435244PMC
February 2019

A 3' Distal Otic Vesicle Enhancer Directs Inner Ear-Specific Expression.

Mol Cell Biol 2018 11 15;38(21). Epub 2018 Oct 15.

Department of Cell and Developmental Biology, University of Michigan, Ann Arbor, Michigan, USA

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http://dx.doi.org/10.1128/MCB.00302-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6189460PMC
November 2018

The utility of quantitative CT radiomics features for improved prediction of radiation pneumonitis.

Med Phys 2018 Nov 24;45(11):5317-5324. Epub 2018 Sep 24.

Department of Radiation Physics, The University of Texas, MD Anderson Cancer Center, Houston, TX, USA.

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http://dx.doi.org/10.1002/mp.13150DOI Listing
November 2018

Auto-delineation of oropharyngeal clinical target volumes using 3D convolutional neural networks.

Phys Med Biol 2018 11 7;63(21):215026. Epub 2018 Nov 7.

Department of Radiation Physics, The University of Texas MD Anderson Cancer Center, Houston, TX, United States of America. Author to whom any correspondence should be addressed.

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http://stacks.iop.org/0031-9155/63/i=21/a=215026?key=crossre
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http://dx.doi.org/10.1088/1361-6560/aae8a9DOI Listing
November 2018

Radiologic image-based statistical shape analysis of brain tumours.

J R Stat Soc Ser C Appl Stat 2018 Nov 15;67(5):1357-1378. Epub 2018 Mar 15.

University of Texas MD Anderson Cancer Center, Houston, USA.

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http://doi.wiley.com/10.1111/rssc.12272
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http://dx.doi.org/10.1111/rssc.12272DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6225782PMC
November 2018

Genomics, bio specimens, and other biological data: Current status and future directions.

Med Phys 2018 Oct 18;45(10):e829-e833. Epub 2018 Sep 18.

Department of Radiation Oncology, University of Michigan Health System, Ann Arbor, MI, 48109, USA.

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http://doi.wiley.com/10.1002/mp.12912
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http://dx.doi.org/10.1002/mp.12912DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6214357PMC
October 2018

Accuracy of High-Frequency Endoluminal Ultrasonography for Clinical Staging of Upper Tract Urothelial Carcinoma.

J Endourol 2018 09 21;32(9):806-811. Epub 2018 Aug 21.

1 Department of Urology, University of Texas MD Anderson Cancer Center , Houston, Texas.

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http://dx.doi.org/10.1089/end.2018.0442DOI Listing
September 2018

Gene set analysis of post-lactational mammary gland involution gene signatures in inflammatory and triple-negative breast cancer.

PLoS One 2018 4;13(4):e0192689. Epub 2018 Apr 4.

Morgan Welch Inflammatory Breast Cancer Research Program and Clinic, the University of Texas MD Anderson Cancer Center, Houston, TX, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0192689PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5884491PMC
July 2018

Predictive Gene Signatures Determine Tumor Sensitivity to MDM2 Inhibition.

Cancer Res 2018 05 28;78(10):2721-2731. Epub 2018 Feb 28.

Section of Molecular Hematology and Therapy, Department of Leukemia, The University of Texas MD Anderson Cancer Center, Houston, Texas.

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http://dx.doi.org/10.1158/0008-5472.CAN-17-0949DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5955838PMC
May 2018

PanCancer insights from The Cancer Genome Atlas: the pathologist's perspective.

J Pathol 2018 04 22;244(5):512-524. Epub 2018 Feb 22.

Departments of Pathology, Genomic Medicine, and Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.

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http://dx.doi.org/10.1002/path.5028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6240356PMC
April 2018

Inferring network structure in non-normal and mixed discrete-continuous genomic data.

Biometrics 2018 03 24;74(1):185-195. Epub 2017 Apr 24.

Department of Biostatistics, The University of Texas MD Anderson Cancer Center, 1400 Pressler Dr., Houston,Texas 77030, U.S.A.

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http://doi.wiley.com/10.1111/biom.12711
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http://dx.doi.org/10.1111/biom.12711DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5654714PMC
March 2018

Spatial interaction of tumor cells and regulatory T cells correlates with survival in non-small cell lung cancer.

Lung Cancer 2018 03 4;117:73-79. Epub 2018 Feb 4.

Department of Radiation Oncology, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, TX, 77030, USA; Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center,1515 Holcombe Boulevard, Houston, TX, 77030, USA. Electronic address:

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http://dx.doi.org/10.1016/j.lungcan.2018.01.022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6294443PMC
March 2018

Emission Modeling of an Interturbine Burner Based on Flameless Combustion.

Energy Fuels 2018 Jan 21;32(1):822-838. Epub 2017 Nov 21.

Faculty of Aerospace Engineering, Delft University of Technology, Kluyverweg 1, 2629 Delft, The Netherlands.

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http://pubs.acs.org/doi/10.1021/acs.energyfuels.7b02473
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http://dx.doi.org/10.1021/acs.energyfuels.7b02473DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5997466PMC
January 2018

Predicting Long-Term Cognitive Outcome Following Breast Cancer with Pre-Treatment Resting State fMRI and Random Forest Machine Learning.

Front Hum Neurosci 2017 15;11:555. Epub 2017 Nov 15.

Department of Psychiatry and Behavioral Sciences, School of Medicine, Stanford University, Palo Alto, CA, United States.

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http://dx.doi.org/10.3389/fnhum.2017.00555DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5694825PMC
November 2017

Probability of Alzheimer's disease in breast cancer survivors based on gray-matter structural network efficiency.

Alzheimers Dement (Amst) 2017 1;9:67-75. Epub 2017 Nov 1.

Department of Bioinformatics and Computational Biology, University of Texas MD Anderson Cancer Center, Houston, TX, USA.

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http://dx.doi.org/10.1016/j.dadm.2017.10.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5700833PMC
November 2017

Tumor image-derived texture features are associated with CD3 T-cell infiltration status in glioblastoma.

Oncotarget 2017 Nov 5;8(60):101244-101254. Epub 2017 Sep 5.

Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston 77030, TX, USA.

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http://dx.doi.org/10.18632/oncotarget.20643DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5731870PMC
November 2017

Targeting P-selectin blocks neuroblastoma growth.

Oncotarget 2017 Oct 28;8(49):86657-86670. Epub 2017 Sep 28.

Departments of Pediatrics, M.D. Anderson Cancer Center, Houston, TX, USA.

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http://dx.doi.org/10.18632/oncotarget.21364DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5689715PMC
October 2017

The feasibility of endoscopy-CT image registration in the head and neck without prospective endoscope tracking.

PLoS One 2017 18;12(5):e0177886. Epub 2017 May 18.

Department of Radiation Physics, The University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0177886PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5436843PMC
September 2017

The influence of non-rigid anatomy and patient positioning on endoscopy-CT image registration in the head and neck.

Med Phys 2017 Aug 16;44(8):4159-4168. Epub 2017 Jun 16.

Department of Radiation Physics, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA.

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http://dx.doi.org/10.1002/mp.12352DOI Listing
August 2017

Spatial computation of intratumoral T cells correlates with survival of patients with pancreatic cancer.

Nat Commun 2017 04 27;8:15095. Epub 2017 Apr 27.

Department of Cancer Biology, Metastasis Research Center, The University of Texas MD Anderson Cancer Center, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1038/ncomms15095DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5414182PMC
April 2017

Identification of Histological Correlates of Overall Survival in Lower Grade Gliomas Using a Bag-of-words Paradigm: A Preliminary Analysis Based on Hematoxylin & Eosin Stained Slides from the Lower Grade Glioma Cohort of The Cancer Genome Atlas.

J Pathol Inform 2017 10;8. Epub 2017 Mar 10.

Department of Bioinformatics and Computational Biology, Division of Quantitative Sciences, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA; Department of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.

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http://dx.doi.org/10.4103/jpi.jpi_43_16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5364741PMC
March 2017

Analysis of the inhibitors of apoptosis identifies BIRC3 as a facilitator of malignant progression in glioma.

Oncotarget 2017 Feb;8(8):12695-12704

Department of Neurosurgery, The University of Texas MD Anderson Cancer Center, Houston, Texas 77030, USA.

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http://dx.doi.org/10.18632/oncotarget.8657DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5355046PMC
February 2017

Spatial Habitat Features Derived from Multiparametric Magnetic Resonance Imaging Data Are Associated with Molecular Subtype and 12-Month Survival Status in Glioblastoma Multiforme.

PLoS One 2015 14;10(9):e0136557. Epub 2015 Sep 14.

Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0136557PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4569439PMC
June 2016

Comprehensive Two- and Three-Dimensional RNAi Screening Identifies PI3K Inhibition as a Complement to MEK Inhibitor AS703026 for Combination Treatment of Triple-Negative Breast Cancer.

J Cancer 2015 28;6(12):1306-19. Epub 2015 Oct 28.

2. Department of Bioinformatics and Computational Biology - Unit 1410, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Blvd., Houston, TX, 77030, USA;

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http://dx.doi.org/10.7150/jca.13266DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4643087PMC
December 2015

Evaluation of tumor-derived MRI-texture features for discrimination of molecular subtypes and prediction of 12-month survival status in glioblastoma.

Med Phys 2015 Nov;42(11):6725-35

Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, Texas 77030.

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http://dx.doi.org/10.1118/1.4934373DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5148162PMC
November 2015

Associating spatial diversity features of radiologically defined tumor habitats with epidermal growth factor receptor driver status and 12-month survival in glioblastoma: methods and preliminary investigation.

J Med Imaging (Bellingham) 2015 Oct 25;2(4):041006. Epub 2015 Aug 25.

University of Texas , MD Anderson Cancer Center, Department of Bioinformatics and Computational Biology, 1515 Holcombe Boulevard, Houston, Texas 77030, United States.

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http://dx.doi.org/10.1117/1.JMI.2.4.041006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4718420PMC
October 2015

Imaging-genomic pipeline for identifying gene mutations using three-dimensional intra-tumor heterogeneity features.

J Med Imaging (Bellingham) 2015 Oct 6;2(4):041009. Epub 2015 Oct 6.

University of Texas MD Anderson Cancer Center , Department of Bioinformatics and Computational Biology, 1400 Pressler Street, Unit 1410, Houston, Texas 77030, United States.

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http://dx.doi.org/10.1117/1.JMI.2.4.041009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4729215PMC
October 2015

Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas.

Authors:
Daniel J Brat Roel G W Verhaak Kenneth D Aldape W K Alfred Yung Sofie R Salama Lee A D Cooper Esther Rheinbay C Ryan Miller Mark Vitucci Olena Morozova A Gordon Robertson Houtan Noushmehr Peter W Laird Andrew D Cherniack Rehan Akbani Jason T Huse Giovanni Ciriello Laila M Poisson Jill S Barnholtz-Sloan Mitchel S Berger Cameron Brennan Rivka R Colen Howard Colman Adam E Flanders Caterina Giannini Mia Grifford Antonio Iavarone Rajan Jain Isaac Joseph Jaegil Kim Katayoon Kasaian Tom Mikkelsen Bradley A Murray Brian Patrick O'Neill Lior Pachter Donald W Parsons Carrie Sougnez Erik P Sulman Scott R Vandenberg Erwin G Van Meir Andreas von Deimling Hailei Zhang Daniel Crain Kevin Lau David Mallery Scott Morris Joseph Paulauskis Robert Penny Troy Shelton Mark Sherman Peggy Yena Aaron Black Jay Bowen Katie Dicostanzo Julie Gastier-Foster Kristen M Leraas Tara M Lichtenberg Christopher R Pierson Nilsa C Ramirez Cynthia Taylor Stephanie Weaver Lisa Wise Erik Zmuda Tanja Davidsen John A Demchok Greg Eley Martin L Ferguson Carolyn M Hutter Kenna R Mills Shaw Bradley A Ozenberger Margi Sheth Heidi J Sofia Roy Tarnuzzer Zhining Wang Liming Yang Jean Claude Zenklusen Brenda Ayala Julien Baboud Sudha Chudamani Mark A Jensen Jia Liu Todd Pihl Rohini Raman Yunhu Wan Ye Wu Adrian Ally J Todd Auman Miruna Balasundaram Saianand Balu Stephen B Baylin Rameen Beroukhim Moiz S Bootwalla Reanne Bowlby Christopher A Bristow Denise Brooks Yaron Butterfield Rebecca Carlsen Scott Carter Lynda Chin Andy Chu Eric Chuah Kristian Cibulskis Amanda Clarke Simon G Coetzee Noreen Dhalla Tim Fennell Sheila Fisher Stacey Gabriel Gad Getz Richard Gibbs Ranabir Guin Angela Hadjipanayis D Neil Hayes Toshinori Hinoue Katherine Hoadley Robert A Holt Alan P Hoyle Stuart R Jefferys Steven Jones Corbin D Jones Raju Kucherlapati Phillip H Lai Eric Lander Semin Lee Lee Lichtenstein Yussanne Ma Dennis T Maglinte Harshad S Mahadeshwar Marco A Marra Michael Mayo Shaowu Meng Matthew L Meyerson Piotr A Mieczkowski Richard A Moore Lisle E Mose Andrew J Mungall Angeliki Pantazi Michael Parfenov Peter J Park Joel S Parker Charles M Perou Alexei Protopopov Xiaojia Ren Jeffrey Roach Thaís S Sabedot Jacqueline Schein Steven E Schumacher Jonathan G Seidman Sahil Seth Hui Shen Janae V Simons Payal Sipahimalani Matthew G Soloway Xingzhi Song Huandong Sun Barbara Tabak Angela Tam Donghui Tan Jiabin Tang Nina Thiessen Timothy Triche David J Van Den Berg Umadevi Veluvolu Scot Waring Daniel J Weisenberger Matthew D Wilkerson Tina Wong Junyuan Wu Liu Xi Andrew W Xu Lixing Yang Travis I Zack Jianhua Zhang B Arman Aksoy Harindra Arachchi Chris Benz Brady Bernard Daniel Carlin Juok Cho Daniel DiCara Scott Frazer Gregory N Fuller JianJiong Gao Nils Gehlenborg David Haussler David I Heiman Lisa Iype Anders Jacobsen Zhenlin Ju Sol Katzman Hoon Kim Theo Knijnenburg Richard Bailey Kreisberg Michael S Lawrence William Lee Kalle Leinonen Pei Lin Shiyun Ling Wenbin Liu Yingchun Liu Yuexin Liu Yiling Lu Gordon Mills Sam Ng Michael S Noble Evan Paull Arvind Rao Sheila Reynolds Gordon Saksena Zack Sanborn Chris Sander Nikolaus Schultz Yasin Senbabaoglu Ronglai Shen Ilya Shmulevich Rileen Sinha Josh Stuart S Onur Sumer Yichao Sun Natalie Tasman Barry S Taylor Doug Voet Nils Weinhold John N Weinstein Da Yang Kosuke Yoshihara Siyuan Zheng Wei Zhang Lihua Zou Ty Abel Sara Sadeghi Mark L Cohen Jenny Eschbacher Eyas M Hattab Aditya Raghunathan Matthew J Schniederjan Dina Aziz Gene Barnett Wendi Barrett Darell D Bigner Lori Boice Cathy Brewer Chiara Calatozzolo Benito Campos Carlos Gilberto Carlotti Timothy A Chan Lucia Cuppini Erin Curley Stefania Cuzzubbo Karen Devine Francesco DiMeco Rebecca Duell J Bradley Elder Ashley Fehrenbach Gaetano Finocchiaro William Friedman Jordonna Fulop Johanna Gardner Beth Hermes Christel Herold-Mende Christine Jungk Ady Kendler Norman L Lehman Eric Lipp Ouida Liu Randy Mandt Mary McGraw Roger Mclendon Christopher McPherson Luciano Neder Phuong Nguyen Ardene Noss Raffaele Nunziata Quinn T Ostrom Cheryl Palmer Alessandro Perin Bianca Pollo Alexander Potapov Olga Potapova W Kimryn Rathmell Daniil Rotin Lisa Scarpace Cathy Schilero Kelly Senecal Kristen Shimmel Vsevolod Shurkhay Suzanne Sifri Rosy Singh Andrew E Sloan Kathy Smolenski Susan M Staugaitis Ruth Steele Leigh Thorne Daniela P C Tirapelli Andreas Unterberg Mahitha Vallurupalli Yun Wang Ronald Warnick Felicia Williams Yingli Wolinsky Sue Bell Mara Rosenberg Chip Stewart Franklin Huang Jonna L Grimsby Amie J Radenbaugh Jianan Zhang
June 2015

Automated discrimination of lower and higher grade gliomas based on histopathological image analysis.

J Pathol Inform 2015 24;6:15. Epub 2015 Mar 24.

Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.

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http://dx.doi.org/10.4103/2153-3539.153914DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4382761PMC
April 2015

Automated analysis of immunohistochemistry images identifies candidate location biomarkers for cancers.

Proc Natl Acad Sci U S A 2014 Dec 8;111(51):18249-54. Epub 2014 Dec 8.

Lane Center for Computational Biology, Center for Bioimage Informatics, Department of Biomedical Engineering, Department of Biological Sciences, and Machine Learning Department, Carnegie Mellon University, Pittsburgh, PA 15213

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http://dx.doi.org/10.1073/pnas.1415120112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4280586PMC
December 2014

Survivin transcript variant 2 drives angiogenesis and malignant progression in proneural gliomas.

Neuro Oncol 2014 Sep 27;16(9):1220-8. Epub 2014 Mar 27.

Department of Neurosurgery, The University of Texas MD Anderson Cancer Center, Houston, Texas (T.D., L.K., Y.Y., G.R.); Department of Pathology, The University of Texas MD Anderson Cancer Center, Houston, Texas (G.N.F.); Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, Texas (A.R.).

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http://dx.doi.org/10.1093/neuonc/nou034DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4136894PMC
September 2014

Outcome prediction in patients with glioblastoma by using imaging, clinical, and genomic biomarkers: focus on the nonenhancing component of the tumor.

Radiology 2014 Aug 19;272(2):484-93. Epub 2014 Mar 19.

From the Division of Neuroradiology, Department of Radiology (R.J.), Bioinformatics Center, Department of Public Health Sciences (L.M.P.), and Department of Neurosurgery (R.J., L.S., T.M.), Henry Ford Health System, 2799 W Grand Blvd, Detroit, MI 48202; Department of Radiology, Emory University, Atlanta, Ga (D.G., C.A.H.); Department of Radiology, St Jude's Children's Research Hospital, Memphis, Tenn (S.N.H.); Department of Radiology, University of Virginia, Charlottesville, Va (M.W.); Department of Radiology, MD Anderson Cancer Center, Houston, Tex (A.R.); Department of Radiology, Brigham and Women's Hospital, Boston, Mass (R.R.C.); Clinical Research Directorate, CMRP, SAIC-Frederick, NCI-Frederick, Frederick, Md (J.K., J.F.); Department of Radiology, Boston University, Boston, Mass (C.C.J.); and Department of Radiology, Thomas Jefferson University Hospital, Philadelphia, Pa (A.F.).

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http://dx.doi.org/10.1148/radiol.14131691DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4263660PMC
August 2014

Forecasting longitudinal changes in oropharyngeal tumor morphology throughout the course of head and neck radiation therapy.

Med Phys 2014 Aug;41(8):081708

Department of Radiation Physics and Department of Imaging Physics, The University of Texas MD Anderson Cancer Center, Houston, Texas 77030 and The Graduate School of Biomedical Sciences, The University of Texas Health Science Center at Houston, Houston, Texas 77030.

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http://dx.doi.org/10.1118/1.4887815DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5148036PMC
August 2014

MRI characterization of cobalt dichloride-N-acetyl cysteine (C4) contrast agent marker for prostate brachytherapy.

Phys Med Biol 2014 May 28;59(10):2505-16. Epub 2014 Apr 28.

The University of Texas at Houston Graduate School of Biomedical Sciences, 6767 Bertner Avenue, Houston, TX 77030, USA. Department of Radiation Physics, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, TX 77030, USA.

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http://stacks.iop.org/0031-9155/59/i=10/a=2505?key=crossref.
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http://dx.doi.org/10.1088/0031-9155/59/10/2505DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4090919PMC
May 2014

Predicting oropharyngeal tumor volume throughout the course of radiation therapy from pretreatment computed tomography data using general linear models.

Med Phys 2014 May;41(5):051705

Department of Radiation Physics and Department of Imaging Physics, The University of Texas MD Anderson Cancer Center, Houston, Texas 77030 and The Graduate School of Biomedical Sciences, The University of Texas Health Science Center at Houston, Houston, Texas 77030.

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http://dx.doi.org/10.1118/1.4870437DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5148034PMC
May 2014

Immune heterogeneity of glioblastoma subtypes: extrapolation from the cancer genome atlas.

Cancer Immunol Res 2013 Aug;1(2):112-22

Department of Neurosurgery, The University of Texas M. D. Anderson Cancer Center, Houston, Texas, 77030.

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http://dx.doi.org/10.1158/2326-6066.CIR-13-0028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3881271PMC
August 2013

An NK and T cell enhancer lies 280 kilobase pairs 3' to the gata3 structural gene.

Mol Cell Biol 2011 May 7;31(9):1894-904. Epub 2011 Mar 7.

Department of Cell and Developmental Biology, 3071 BSRB, 109 Zina Pitcher Place, University of Michigan Medical School, Ann Arbor, MI 48103, USA.

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http://dx.doi.org/10.1128/MCB.05065-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3133233PMC
May 2011

Inferring time-varying network topologies from gene expression data.

EURASIP J Bioinform Syst Biol 2007 :51947

Department of Electrical Engineering and Computer Science, University of Michigan, Ann Arbor, MI 48109-2122, USA.

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http://dx.doi.org/10.1155/2007/51947DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3171343PMC
June 2010

Motif discovery in tissue-specific regulatory sequences using directed information.

EURASIP J Bioinform Syst Biol 2007 :13853

Departments of Electrical Engineering and Computer Science and Bioinformatics, University of Michigan, Ann Arbor, MI 48109, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3171326PMC
June 2010

Understanding distal transcriptional regulation from sequence, expression and interactome perspectives.

J Bioinform Comput Biol 2010 Apr;8(2):219-46

Bioinformatics, University of Michigan, Ann Arbor, MI 48109, USA.

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April 2010

Automated Analysis of Human Protein Atlas Immunofluorescence Images.

Proc IEEE Int Symp Biomed Imaging 2009 ;5193229:1023-1026

Center for Bioimage Informatics and Dept. of Biomedical Engineering, Carnegie Mellon University, Pittsburgh, PA, USA.

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http://dx.doi.org/10.1109/ISBI.2009.5193229DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2901900PMC
January 2009

Using directed information to build biologically relevant influence networks.

J Bioinform Comput Biol 2008 Jun;6(3):493-519

Department of Electrical Engineering and Computer Science, University of Michigan, Ann Arbor, MI 48109, USA.

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June 2008

Using directed information to build biologically relevant influence networks.

Comput Syst Bioinformatics Conf 2007 ;6:145-56

Electrical Engineering and Computer Science, Bioinformatics, University of Michigan, Ann Arbor, MI 48109, USA.

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December 2007

Dosage-dependent rescue of definitive nephrogenesis by a distant Gata3 enhancer.

Dev Biol 2007 Jan 22;301(2):568-77. Epub 2006 Sep 22.

Department of Cell and Developmental Biology, University of Michigan Medical School, Ann Arbor, MI 48109-0616, USA.

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http://dx.doi.org/10.1016/j.ydbio.2006.09.030DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1858647PMC
January 2007