Armando Pinho

Armando Pinho

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Armando Pinho

Armando Pinho

Publications by authors named "Armando Pinho"

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Distribution of Distances Between Symmetric Words in the Human Genome: Analysis of Regular Peaks.

Interdiscip Sci 2019 Sep 25;11(3):367-372. Epub 2019 Mar 25.

Department of Medical Sciences, iBiMED, IEETA-Institute of Electronics and Informatics Engineering of Aveiro, University of Aveiro, Campus Universitário de Santiago, Aveiro, Portugal.

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http://dx.doi.org/10.1007/s12539-019-00326-xDOI Listing
September 2019

AC: A Compression Tool for Amino Acid Sequences.

Interdiscip Sci 2019 Mar 5;11(1):68-76. Epub 2019 Feb 5.

IEETA/DETI, University of Aveiro, Aveiro, Portugal.

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http://dx.doi.org/10.1007/s12539-019-00322-1DOI Listing
March 2019

Metagenomic Composition Analysis of an Ancient Sequenced Polar Bear Jawbone from Svalbard.

Genes (Basel) 2018 Sep 6;9(9). Epub 2018 Sep 6.

Interdisciplinary Centre of Marine and Environmental Research, University of Porto, 4450-208 Matosinhos, Portugal.

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http://dx.doi.org/10.3390/genes9090445DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6162538PMC
September 2018

Biometric and Emotion Identification: An ECG Compression Based Method.

Front Psychol 2018 4;9:467. Epub 2018 Apr 4.

IEETA - Institute of Electronics and Informatics Engineering of Aveiro, University of Aveiro, Aveiro, Portugal.

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http://journal.frontiersin.org/article/10.3389/fpsyg.2018.00
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http://dx.doi.org/10.3389/fpsyg.2018.00467DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5893853PMC
April 2018

Comparing Reverse Complementary Genomic Words Based on Their Distance Distributions and Frequencies.

Interdiscip Sci 2018 Mar 6;10(1):1-11. Epub 2017 Dec 6.

Department of Mathematics and CIDMA and iBiMED and IEETA, University of Aveiro, Aveiro, Portugal.

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http://dx.doi.org/10.1007/s12539-017-0273-0DOI Listing
March 2018

MAFCO: a compression tool for MAF files.

PLoS One 2015 27;10(3):e0116082. Epub 2015 Mar 27.

Signal Processing Lab, IEETA/DETI, University of Aveiro, 3810-193 Aveiro, Portugal.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0116082PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4376647PMC
February 2016

Analysis-Driven Lossy Compression of DNA Microarray Images.

IEEE Trans Med Imaging 2016 Feb 9;35(2):654-64. Epub 2015 Oct 9.

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http://dx.doi.org/10.1109/TMI.2015.2489262DOI Listing
February 2016

Three minimal sequences found in Ebola virus genomes and absent from human DNA.

Bioinformatics 2015 Aug 2;31(15):2421-5. Epub 2015 Apr 2.

IEETA and DETI, University of Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro, Portugal.

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http://dx.doi.org/10.1093/bioinformatics/btv189DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4514932PMC
August 2015

ECG biometric identification: A compression based approach.

Conf Proc IEEE Eng Med Biol Soc 2015 08;2015:5838-41

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http://dx.doi.org/10.1109/EMBC.2015.7319719DOI Listing
August 2015

DNA sequences at a glance.

PLoS One 2013 21;8(11):e79922. Epub 2013 Nov 21.

Signal Processing Lab, IEETA/DETI, University of Aveiro, Aveiro, Portugal.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0079922PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3836782PMC
September 2014

Compressing resequencing data with GReEn.

Methods Mol Biol 2013 ;1038:27-37

IEETA/DETI, University of Aveiro, Aveiro, Portugal.

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http://dx.doi.org/10.1007/978-1-62703-514-9_2DOI Listing
February 2014

MFCompress: a compression tool for FASTA and multi-FASTA data.

Bioinformatics 2014 Jan 16;30(1):117-8. Epub 2013 Oct 16.

IEETA, Department of Electronics, Telecommunications and Informatics, University of Aveiro, 3810-193 Aveiro, Portugal.

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http://dx.doi.org/10.1093/bioinformatics/btt594DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3866555PMC
January 2014

XS: a FASTQ read simulator.

BMC Res Notes 2014 Jan 16;7:40. Epub 2014 Jan 16.

Signal Processing Lab, IEETA/DETI University of Aveiro, Aveiro 3810-193, Portugal.

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http://dx.doi.org/10.1186/1756-0500-7-40DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3927261PMC
January 2014

Inter-STOP symbol distances for the identification of coding regions.

J Integr Bioinform 2013 Nov 14;10(3):230. Epub 2013 Nov 14.

Signal Processing Lab, IEETA and Department of Electronics, Telecommunications and Informatics, University of Aveiro, 3810-193 Aveiro, Portugal.

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http://dx.doi.org/10.2390/biecoll-jib-2013-230DOI Listing
November 2013

The breakdown of the word symmetry in the human genome.

J Theor Biol 2013 Oct 2;335:153-9. Epub 2013 Jul 2.

CIDMA - Center for Research and Development in Mathematics and Applications, Department of Mathematics, University of Aveiro, 3810-193 Aveiro, Portugal.

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http://sweet.ua.pt/pjf/PDF/Ferreira2013f.pdf
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http://linkinghub.elsevier.com/retrieve/pii/S002251931300304
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http://dx.doi.org/10.1016/j.jtbi.2013.06.032DOI Listing
October 2013

Minimal absent words in four human genome assemblies.

PLoS One 2011 29;6(12):e29344. Epub 2011 Dec 29.

Signal Processing Laboratory, Institute of Electronics and Telematics Engineering of Aveiro, University of Aveiro, Aveiro, Portugal.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0029344PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3248429PMC
April 2012

GReEn: a tool for efficient compression of genome resequencing data.

Nucleic Acids Res 2012 Feb 1;40(4):e27. Epub 2011 Dec 1.

Signal Processing Lab, IEETA/DETI, University of Aveiro, 3810-193 Aveiro, Portugal.

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http://dx.doi.org/10.1093/nar/gkr1124DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3287168PMC
February 2012

Inter-dinucleotide distances in the human genome: an analysis of the whole-genome and protein-coding distributions.

J Integr Bioinform 2011 Sep 15;8(3):172. Epub 2011 Sep 15.

Signal Processing Lab, IEETA, University of Aveiro, 3810-193 Aveiro, Portugal.

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http://dx.doi.org/10.2390/biecoll-jib-2011-172DOI Listing
September 2011

Genome analysis with distance to the nearest dissimilar nucleotide.

J Theor Biol 2011 Apr 2;275(1):52-8. Epub 2011 Feb 2.

Department of Mathematics, University of Aveiro, 3810-193 Aveiro, Portugal.

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http://dx.doi.org/10.1016/j.jtbi.2011.01.038DOI Listing
April 2011

Minimal absent words in prokaryotic and eukaryotic genomes.

PLoS One 2011 Jan 31;6(1):e16065. Epub 2011 Jan 31.

Signal Processing Laboratory, IEETA, University of Aveiro, Aveiro, Portugal.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0016065PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3031530PMC
January 2011

On finding minimal absent words.

BMC Bioinformatics 2009 May 8;10:137. Epub 2009 May 8.

Signal Processing Lab, DETI/IEETA, University of Aveiro, 3810-193 Aveiro, Portugal.

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http://dx.doi.org/10.1186/1471-2105-10-137DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2698904PMC
May 2009

Lossless compression of microarray images using image-dependent finite-context models.

IEEE Trans Med Imaging 2009 Feb;28(2):194-201

Signal Processing Laboratory, DETI/IEETA, University of Aveiro, 3810-193 Aveiro, Portugal.

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http://dx.doi.org/10.1109/TMI.2008.929095DOI Listing
February 2009

A three-state model for DNA protein-coding regions.

IEEE Trans Biomed Eng 2006 Nov;53(11):2148-55

Signal Processing Laboratory, DETI/IEETA, University of Aveiro, 3810-193 Aveiro, Portugal.

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http://ieeexplore.ieee.org/iel5/10/36082/01710155.pdf?arnumb
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http://ieeexplore.ieee.org/lpdocs/epic03/wrapper.htm?arnumbe
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http://dx.doi.org/10.1109/TBME.2006.879477DOI Listing
November 2006

On the use of standards for microarray lossless image compression.

IEEE Trans Biomed Eng 2006 Mar;53(3):563-6

Department de Electrónica e Telecomunicações and with the Instituto de Engenharia Electrónica e Telemática de Aveiro (IEETA), Universidade de Aveiro, 3810-193 Aveiro, Portugal.

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http://dx.doi.org/10.1109/TBME.2005.869782DOI Listing
March 2006

A survey on palette reordering methods for improving the compression of color-indexed images.

IEEE Trans Image Process 2004 Nov;13(11):1411-8

Department of Electronics and Telecommunications, Instituto de Engenharia Electrónica e Telemática de Aveiro, Universidade de Aveiro, Portugal.

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http://dx.doi.org/10.1109/tip.2004.836168DOI Listing
November 2004