Aristeidis G Telonis

Aristeidis G Telonis

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Aristeidis G Telonis

Aristeidis G Telonis

Publications by authors named "Aristeidis G Telonis"

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22Publications

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tRNA Fragments Show Intertwining with mRNAs of Specific Repeat Content and Have Links to Disparities.

Cancer Res 2019 Jun 17;79(12):3034-3049. Epub 2019 Apr 17.

Computational Medicine Center, Thomas Jefferson University, Philadelphia, Pennsylvania.

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http://dx.doi.org/10.1158/0008-5472.CAN-19-0789DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6571059PMC
June 2019

Accurate Profiling and Quantification of tRNA Fragments from RNA-Seq Data: A Vade Mecum for MINTmap.

Methods Mol Biol 2018 ;1680:237-255

Computational Medicine Center, Sidney Kimmel Medical College, Thomas Jefferson University, Philadelphia, PA, USA.

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http://dx.doi.org/10.1007/978-1-4939-7339-2_16DOI Listing
May 2018

Race Disparities in the Contribution of miRNA Isoforms and tRNA-Derived Fragments to Triple-Negative Breast Cancer.

Cancer Res 2018 03 11;78(5):1140-1154. Epub 2017 Dec 11.

Computational Medicine Center, Sidney Kimmel Medical College, Thomas Jefferson University, Philadelphia, Pennsylvania.

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http://dx.doi.org/10.1158/0008-5472.CAN-17-1947DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5935570PMC
March 2018

Profiles of miRNA Isoforms and tRNA Fragments in Prostate Cancer.

Sci Rep 2018 03 28;8(1):5314. Epub 2018 Mar 28.

Computational Medicine Center, Thomas Jefferson University, 1020 Locust Street, Philadelphia, PA, 19107, USA.

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http://dx.doi.org/10.1038/s41598-018-22488-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5871839PMC
March 2018

MINTbase v2.0: a comprehensive database for tRNA-derived fragments that includes nuclear and mitochondrial fragments from all The Cancer Genome Atlas projects.

Nucleic Acids Res 2018 01;46(D1):D152-D159

Computational Medicine Center, Sidney Kimmel Medical College at Thomas Jefferson University, Jefferson Alumni Hall #M81, Thomas Jefferson University, 1020 Locust Street, Philadelphia, PA 19107, USA.

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http://academic.oup.com/nar/article/46/D1/D152/4653530
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http://dx.doi.org/10.1093/nar/gkx1075DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753276PMC
January 2018

Assessment of isomiR Discrimination Using Commercial qPCR Methods.

Noncoding RNA 2017 Jun 24;3(2). Epub 2017 Mar 24.

Computational Medicine Center, http://cm.jefferson.edu/, Thomas Jefferson University, 1020 Locust Street, Philadelphia, PA 19107, USA.

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http://dx.doi.org/10.3390/ncrna3020018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5514785PMC
June 2017

YAMAT-seq: an efficient method for high-throughput sequencing of mature transfer RNAs.

Nucleic Acids Res 2017 May;45(9):e70

Computational Medicine Center, Sidney Kimmel Medical College, Thomas Jefferson University, Philadelphia, PA 19107, USA.

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http://dx.doi.org/10.1093/nar/gkx005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5605243PMC
May 2017

Knowledge about the presence or absence of miRNA isoforms (isomiRs) can successfully discriminate amongst 32 TCGA cancer types.

Nucleic Acids Res 2017 04;45(6):2973-2985

Computational Medicine Center, Sidney Kimmel Medical College, Thomas Jefferson University, Thomas Jefferson University, PA 19107, USA.

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http://dx.doi.org/10.1093/nar/gkx082DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5389567PMC
April 2017

MINTmap: fast and exhaustive profiling of nuclear and mitochondrial tRNA fragments from short RNA-seq data.

Sci Rep 2017 02 21;7:41184. Epub 2017 Feb 21.

Computational Medicine Center, Sidney Kimmel Medical College, Thomas Jefferson University, 1020 Locust Street, Philadelphia, PA 19107, USA.

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http://dx.doi.org/10.1038/srep41184DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5318995PMC
February 2017

MINTbase: a framework for the interactive exploration of mitochondrial and nuclear tRNA fragments.

Bioinformatics 2016 08 13;32(16):2481-9. Epub 2016 Apr 13.

Computational Medicine Center, Sidney Kimmel Medical College, Thomas Jefferson University, 1020 Locust Street, Philadelphia, PA 19107, USA.

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http://dx.doi.org/10.1093/bioinformatics/btw194DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4978933PMC
August 2016

Consequential considerations when mapping tRNA fragments.

BMC Bioinformatics 2016 Mar 10;17:123. Epub 2016 Mar 10.

Computational Medicine Center, Sidney Kimmel Medical College, Thomas Jefferson University, 1020 Locust Street, Philadelphia, PA, 19107, USA.

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http://dx.doi.org/10.1186/s12859-016-0921-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4785646PMC
March 2016

Four-leaf clover qRT-PCR: A convenient method for selective quantification of mature tRNA.

RNA Biol 2015 ;12(5):501-8

a Computational Medicine Center ; Sidney Kimmel Medical College ; Thomas Jefferson University ; Philadelphia , PA USA.

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http://dx.doi.org/10.1080/15476286.2015.1031951DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4615770PMC
February 2016

Mitochondrial tRNA-lookalikes in nuclear chromosomes: could they be functional?

RNA Biol 2015 ;12(4):375-80

a Computational Medicine Center; Sidney Kimmel Medical College at Thomas Jefferson University ; Philadelphia , PA USA.

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http://dx.doi.org/10.1080/15476286.2015.1017239DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4615777PMC
January 2016

Beyond the one-locus-one-miRNA paradigm: microRNA isoforms enable deeper insights into breast cancer heterogeneity.

Nucleic Acids Res 2015 Oct 22;43(19):9158-75. Epub 2015 Sep 22.

Computational Medicine Center, Sidney Kimmel Medical College at Thomas Jefferson University, Philadelphia, PA, USA

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkv922DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4627084PMC
October 2015

Dissecting tRNA-derived fragment complexities using personalized transcriptomes reveals novel fragment classes and unexpected dependencies.

Oncotarget 2015 Sep;6(28):24797-822

Computational Medicine Center, Sidney Kimmel Medical College at Thomas Jefferson University, Philadelphia, PA, USA.

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http://dx.doi.org/10.18632/oncotarget.4695DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4694795PMC
September 2015

Phobos: A novel software for recording rodents' behavior during the thigmotaxis and the elevated plus-maze test.

Neurosci Lett 2015 Jul 23;599:81-5. Epub 2015 May 23.

Laboratory of Human and Animal Physiology, Department of Biology, University of Patras, Patras 26504, Greece. Electronic address:

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http://dx.doi.org/10.1016/j.neulet.2015.05.045DOI Listing
July 2015

Nuclear and mitochondrial tRNA-lookalikes in the human genome.

Front Genet 2014 8;5:344. Epub 2014 Oct 8.

Computational Medicine Center, Sidney Kimmel Medical College, Thomas Jefferson University Philadelphia, PA, USA.

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http://dx.doi.org/10.3389/fgene.2014.00344DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4189335PMC
October 2014