Publications by authors named "Arie Geerlof"

53Publications

The dynamics of linear polyubiquitin.

Sci Adv 2020 Oct 14;6(42). Epub 2020 Oct 14.

Department of Chemistry and Institute for Advanced Study, Technical University of Munich, Garching 85747, Germany.

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http://dx.doi.org/10.1126/sciadv.abc3786DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7556843PMC
October 2020

Trnp1 organizes diverse nuclear membrane-less compartments in neural stem cells.

EMBO J 2020 Aug 6;39(16):e103373. Epub 2020 Jul 6.

Physiological Genomics, Biomedical Center (BMC), Ludwig-Maximilians Universitaet Muenchen, Planegg/Munich, Germany.

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http://dx.doi.org/10.15252/embj.2019103373DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7429739PMC
August 2020

Dissecting the molecular effects of cigarette smoke on proteasome function.

J Proteomics 2019 02 14;193:1-9. Epub 2018 Dec 14.

Comprehensive Pneumology Center (CPC), University Hospital, Ludwig-Maximilians University, Helmholtz Zentrum München, Member of the German Center for Lung Research (DZL), Munich, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.jprot.2018.12.015DOI Listing
February 2019

Segmental, Domain-Selective Perdeuteration and Small-Angle Neutron Scattering for Structural Analysis of Multi-Domain Proteins.

Angew Chem Int Ed Engl 2017 08 5;56(32):9322-9325. Epub 2017 Jul 5.

Institute of Structural Biology, Helmholtz Zentrum München, Ingolstädter Landstr. 1, 85764, Neuherberg, Germany.

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http://dx.doi.org/10.1002/anie.201702904DOI Listing
August 2017

Proteome-wide Identification of Glycosylation-dependent Interactors of Galectin-1 and Galectin-3 on Mesenchymal Retinal Pigment Epithelial (RPE) Cells.

Mol Cell Proteomics 2017 08 2;16(8):1528-1546. Epub 2017 Jun 2.

From the ‡Research Unit Protein Science, Helmholtz Center Munich, German Research Center for Environmental Health (GmbH), 85764 Neuherberg;

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http://dx.doi.org/10.1074/mcp.M116.066381DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5546202PMC
August 2017

Structure-function analysis of the DNA-binding domain of a transmembrane transcriptional activator.

Sci Rep 2017 04 21;7(1):1051. Epub 2017 Apr 21.

Munich Center for Integrated Protein Science (CiPSM) at the Department of Chemistry, Technische Universität München, 85748, Garching, Germany.

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http://dx.doi.org/10.1038/s41598-017-01031-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5430869PMC
April 2017

An Aptamer against the Matrix Binding Domain on the Hepatitis B Virus Capsid Impairs Virion Formation.

J Virol 2015 Sep 1;89(18):9281-7. Epub 2015 Jul 1.

Institute of Virology, Helmholtz Zentrum München, Neuherberg, Germany

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http://dx.doi.org/10.1128/JVI.00466-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4542377PMC
September 2015

Structural Analysis of Protein-RNA Complexes in Solution Using NMR Paramagnetic Relaxation Enhancements.

Methods Enzymol 2015 26;558:333-362. Epub 2015 Mar 26.

Institute of Structural Biology, Helmholtz Zentrum München, Oberschleißheim, Germany; Center for Integrated Protein Science Munich at Biomolecular NMR Spectroscopy, Department Chemie, Technische Universität München, Garching, Germany. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00766879150008
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http://dx.doi.org/10.1016/bs.mie.2015.02.006DOI Listing
March 2016

Differential inhibition of Arabidopsis superoxide dismutases by peroxynitrite-mediated tyrosine nitration.

J Exp Bot 2015 Feb 26;66(3):989-99. Epub 2014 Nov 26.

Institute of Biochemical Plant Pathology, Helmholtz Zentrum München-German Research Center for Environmental Health, 85764 München/Neuherberg, Germany

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http://dx.doi.org/10.1093/jxb/eru458DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4321555PMC
February 2015

Structural basis for the assembly of the Sxl-Unr translation regulatory complex.

Nature 2014 Nov 7;515(7526):287-90. Epub 2014 Sep 7.

1] Institute of Structural Biology, Helmholtz Zentrum München, Ingolstädter Landstrasse 1, DE-85764, Germany [2] Center for Integrated Protein Science Munich at Biomolecular NMR Spectroscopy, Department Chemie, Technische Universität München, Lichtenbergstr. 4, DE-85747 Garching, Germany.

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http://dx.doi.org/10.1038/nature13693DOI Listing
November 2014

Structural basis for RNA recognition in roquin-mediated post-transcriptional gene regulation.

Nat Struct Mol Biol 2014 Aug 13;21(8):671-8. Epub 2014 Jul 13.

1] Biomolecular NMR Spectroscopy, Institute of Structural Biology, Helmholtz Zentrum München, Neuherberg, Germany. [2] Center for Integrated Protein Science Munich at Biomolecular NMR Spectroscopy, Department Chemie, Technische Universität München, Garching, Germany.

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http://dx.doi.org/10.1038/nsmb.2855DOI Listing
August 2014

A new ELISA for the quantification of equine procalcitonin in plasma as potential inflammation biomarker in horses.

Anal Bioanal Chem 2014 Sep 14;406(22):5507-12. Epub 2014 Jun 14.

Research Unit Microbe-Plant Interactions, Department of Environmental Sciences, Helmholtz Zentrum München, German Research Center for Environmental Health (GmbH), Ingolstädter Landstraße 1, 85764, Neuherberg, Germany,

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http://link.springer.com/content/pdf/10.1007/s00216-014-7944
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http://link.springer.com/10.1007/s00216-014-7944-z
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http://dx.doi.org/10.1007/s00216-014-7944-zDOI Listing
September 2014

Total internal reflection (TIRF)-based quantification of procalcitonin for sepsis diagnosis--a point-of-care testing application.

Biosens Bioelectron 2014 Sep 1;59:251-8. Epub 2014 Apr 1.

Research Unit Microbe-Plant Interactions, Helmholtz Zentrum München, German Research Center of Environmental Health (GmbH), Ingolstädter Landstraße 1, D-85764 Neuherberg, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.bios.2014.03.052DOI Listing
September 2014

Optimization of protein buffer cocktails using Thermofluor.

Acta Crystallogr Sect F Struct Biol Cryst Commun 2013 Feb 31;69(Pt 2):209-14. Epub 2013 Jan 31.

EMBL Hamburg Outstation, c/o DESY, Notkestrasse 85, D-22603 Hamburg, Germany.

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http://scripts.iucr.org/cgi-bin/paper?S1744309112051858
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http://dx.doi.org/10.1107/S1744309112051858DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3564630PMC
February 2013

Structural characterization of a D-isomer specific 2-hydroxyacid dehydrogenase from Lactobacillus delbrueckii ssp. bulgaricus.

J Struct Biol 2013 Feb 27;181(2):179-84. Epub 2012 Oct 27.

EMBL c/o DESY, Notkestrasse 85, D-22603 Hamburg, Germany.

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http://dx.doi.org/10.1016/j.jsb.2012.10.009DOI Listing
February 2013

Efficient expression and purification of tag-free Epstein-Barr virus EBNA1 protein in Escherichia coli by auto-induction.

Protein Expr Purif 2012 Nov 26;86(1):7-11. Epub 2012 Aug 26.

DNA Replication and Epigenetics Group, Research Unit Gene Vectors, Helmholtz Zentrum München, Germany.

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http://dx.doi.org/10.1016/j.pep.2012.08.010DOI Listing
November 2012

High-throughput protein expression screening and purification in Escherichia coli.

Methods 2011 Sep 8;55(1):65-72. Epub 2011 Sep 8.

Architecture et Fonction des Macromolécules Biologiques, UMR6098 CNRS, Université de Provence and Université de la Méditerranée, Case 932, 163 Avenue de Luminy, 13288 Marseille cedex 9, France.

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https://linkinghub.elsevier.com/retrieve/pii/S10462023110015
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http://dx.doi.org/10.1016/j.ymeth.2011.08.010DOI Listing
September 2011

Expression of protein complexes using multiple Escherichia coli protein co-expression systems: a benchmarking study.

J Struct Biol 2011 Aug 5;175(2):159-70. Epub 2011 Mar 5.

Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), Institut National de Santé et de Recherche Médicale (Inserm), U964/Centre National deRecherche Scientifique (CNRS), UMR 7104, Université de Strasbourg, 1 Rue Laurent Fries, 67404 Illkirch, France.

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http://linkinghub.elsevier.com/retrieve/pii/S104784771100051
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http://dx.doi.org/10.1016/j.jsb.2011.03.004DOI Listing
August 2011

Bisubstrate specificity in histidine/tryptophan biosynthesis isomerase from Mycobacterium tuberculosis by active site metamorphosis.

Proc Natl Acad Sci U S A 2011 Mar 14;108(9):3554-9. Epub 2011 Feb 14.

European Molecular Biology Laboratory, Hamburg Unit, Notkestrasse 85, D-22603 Hamburg, Germany.

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http://dx.doi.org/10.1073/pnas.1015996108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3048130PMC
March 2011

Structural studies on the enzyme complex isopropylmalate isomerase (LeuCD) from Mycobacterium tuberculosis.

Proteins 2011 Jan 11;79(1):35-49. Epub 2010 Oct 11.

EMBL Hamburg Outstation, c/o DESY, Notkestr. 85, D-22603 Hamburg, Germany.

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http://doi.wiley.com/10.1002/prot.22856
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http://dx.doi.org/10.1002/prot.22856DOI Listing
January 2011

Stoichiometric protein complex formation and over-expression using the prokaryotic native operon structure.

FEBS Lett 2010 Feb 18;584(4):669-74. Epub 2010 Jan 18.

European Molecular Biology Laboratory (EMBL), Hamburg Outstation, c/o DESY, Hamburg, Germany.

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http://dx.doi.org/10.1016/j.febslet.2009.12.057DOI Listing
February 2010

Biochemical characterization of haloalkane dehalogenases DrbA and DmbC, Representatives of a Novel Subfamily.

Appl Environ Microbiol 2009 Aug 5;75(15):5157-60. Epub 2009 Jun 5.

Institute of Experimental Biology and National Center for Biomolecular Research, Masaryk University, Brno, Czech Republic.

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http://dx.doi.org/10.1128/AEM.00199-09DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2725514PMC
August 2009

Expression, purification, crystallization and preliminary X-ray crystallographic analysis of a resuscitation-promoting factor from Mycobacterium tuberculosis.

Acta Crystallogr Sect F Struct Biol Cryst Commun 2007 Oct 19;63(Pt 10):870-3. Epub 2007 Sep 19.

Institute of Biostructures and Bioimaging, CNR, Via Mezzocannone 16, I-80134 Napoli, Italy.

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http://dx.doi.org/10.1107/S1744309107043217DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2339737PMC
October 2007

The impact of protein characterization in structural proteomics.

Acta Crystallogr D Biol Crystallogr 2006 Oct 19;62(Pt 10):1125-36. Epub 2006 Sep 19.

EMBL Hamburg Outstation, Notkestrasse 85, Hamburg, Germany.

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http://dx.doi.org/10.1107/S0907444906030307DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7161605PMC
October 2006

The Mycobacterium tuberculosis LipB enzyme functions as a cysteine/lysine dyad acyltransferase.

Proc Natl Acad Sci U S A 2006 Jun 30;103(23):8662-7. Epub 2006 May 30.

EMBL-Hamburg Unit, European Molecular Biology Laboratory, Notkestrasse 85, 22603 Hamburg, Germany.

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http://dx.doi.org/10.1073/pnas.0510436103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1472244PMC
June 2006

Perturbation of yeast 3-phosphoglycerate kinase reaction mixtures with ADP: transient kinetics of formation of ATP from bound 1,3-bisphosphoglycerate.

Biochemistry 2005 Nov;44(45):14948-55

EMBL Hamburg Outstation, c/o DESY, Notkestrasse 85, D-22603 Hamburg, Germany.

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http://pubs.acs.org/doi/abs/10.1021/bi0512290
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http://dx.doi.org/10.1021/bi0512290DOI Listing
November 2005

Building the stator of the yeast vacuolar-ATPase: specific interaction between subunits E and G.

J Biol Chem 2004 Sep 2;279(39):40670-6. Epub 2004 Aug 2.

Structural and Computational Biology Programme, European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany.

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http://dx.doi.org/10.1074/jbc.M407086200DOI Listing
September 2004

Recombinant proteins fused to thermostable partners can be purified by heat incubation.

J Biotechnol 2004 Jan;107(2):125-33

European Molecular Biology Laboratory, Heidelberg, Germany.

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http://dx.doi.org/10.1016/j.jbiotec.2003.10.008DOI Listing
January 2004

Solution scattering suggests cross-linking function of telethonin in the complex with titin.

J Biol Chem 2003 Jan 20;278(4):2636-44. Epub 2002 Nov 20.

European Molecular Biology Laboratory (EMBL), Hamburg Outstation, EMBL c/o Deutsches Electronen- Synchrotron (DESY), Notkestrasse 85, Germany.

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http://dx.doi.org/10.1074/jbc.M210217200DOI Listing
January 2003