Publications by authors named "Arcady Mushegian"

84Publications

RNAs That Behave Like Prions.

mSphere 2020 07 1;5(4). Epub 2020 Jul 1.

Instituto de Biología Integrativa de Sistemas (ISysBio), CSIC-Universitat de València, Paterna, València, Spain.

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http://dx.doi.org/10.1128/mSphere.00520-20DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7333576PMC
July 2020

An ancient evolutionary connection between Ribonuclease A and EndoU families.

RNA 2020 07 13;26(7):803-813. Epub 2020 Apr 13.

Department of Microbiology and Immunology, Montana State University, Bozeman, Montana 59717, USA.

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http://dx.doi.org/10.1261/rna.074385.119DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7297114PMC
July 2020

Measuring similarity between gene interaction profiles.

BMC Bioinformatics 2019 Aug 22;20(1):435. Epub 2019 Aug 22.

Stowers Institute for Medical Research, Kansas City, MO, USA.

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http://dx.doi.org/10.1186/s12859-019-3024-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6704681PMC
August 2019

Michael Adams: new life member of the International Committee on Taxonomy of Viruses (ICTV).

Arch Virol 2019 08 31;164(8):2221. Epub 2019 May 31.

MRC-University of Glasgow Centre for Virus Research, Sir Michael Stoker Building, 464 Bearsden Road, Glasgow, G61 1QH, UK.

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http://dx.doi.org/10.1007/s00705-019-04290-1DOI Listing
August 2019

Modeling protein folding in vivo.

Biol Direct 2018 07 6;13(1):13. Epub 2018 Jul 6.

, McLean, USA.

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http://dx.doi.org/10.1186/s13062-018-0217-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6035440PMC
July 2018

Sequence analysis of malacoherpesvirus proteins: Pan-herpesvirus capsid module and replication enzymes with an ancient connection to "Megavirales".

Virology 2018 01 21;513:114-128. Epub 2017 Oct 21.

Department of Cell Research and Immunology, George S. Wise Faculty of Life Sciences, Tel-Aviv University, Tel-Aviv 69978, Israel.

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http://dx.doi.org/10.1016/j.virol.2017.10.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7172337PMC
January 2018

The role of the backbone torsion in protein folding.

Biol Direct 2016 12 1;11(1):64. Epub 2016 Dec 1.

, McLean, Virginia, USA.

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http://dx.doi.org/10.1186/s13062-016-0166-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5133741PMC
December 2016

Possibility and Challenges of Conversion of Current Virus Species Names to Linnaean Binomials.

Syst Biol 2017 05;66(3):463-473

Integrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Frederick, 21702 MD, USA.

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http://dx.doi.org/10.1093/sysbio/syw096DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5837305PMC
May 2017

Changes in the composition of the RNA virome mark evolutionary transitions in green plants.

BMC Biol 2016 08 15;14:68. Epub 2016 Aug 15.

Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Científicas-Universidad Politécnica de Valencia, Ingeniero Fausto Elio s/n, 46022, València, Spain.

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http://dx.doi.org/10.1186/s12915-016-0288-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4983792PMC
August 2016

Prokaryotic genes in eukaryotic genome sequences: when to infer horizontal gene transfer and when to suspect an actual microbe.

Environ Microbiol 2015 Jul 28;17(7):2203-8. Epub 2015 Apr 28.

Division of Molecular and Cellular Biosciences, National Science Foundation, 4201 Wilson Boulevard, Arlington, VA, 22230, USA.

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http://dx.doi.org/10.1111/1462-2920.12854DOI Listing
July 2015

Evolution of plant virus movement proteins from the 30K superfamily and of their homologs integrated in plant genomes.

Virology 2015 Feb 7;476:304-315. Epub 2015 Jan 7.

Instituto de Biología Molecular y Celular de Plantas, CSIC-UPV, 46022 València, Spain; The Santa Fe Institute, Santa Fe, NM 87501, USA. Electronic address:

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http://dx.doi.org/10.1016/j.virol.2014.12.012DOI Listing
February 2015

Chordopoxvirus protein F12 implicated in enveloped virion morphogenesis is an inactivated DNA polymerase.

Biol Direct 2014 Nov 6;9(1):22. Epub 2014 Nov 6.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA.

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http://dx.doi.org/10.1186/1745-6150-9-22DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4304020PMC
November 2014

Models of gene gain and gene loss for probabilistic reconstruction of gene content in the last universal common ancestor of life.

Biol Direct 2013 Dec 19;8:32. Epub 2013 Dec 19.

Stowers Institute for Medical Research, Kansas City, Missouri 64110, USA.

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http://dx.doi.org/10.1186/1745-6150-8-32DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3892064PMC
December 2013

Genome sequence analysis indicates that the model eukaryote Nematostella vectensis harbors bacterial consorts.

Appl Environ Microbiol 2013 Nov 30;79(22):6868-73. Epub 2013 Aug 30.

N. I. Vavilov Institute of General Genetics RAS, Moscow, Russia.

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http://dx.doi.org/10.1128/AEM.01635-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3811558PMC
November 2013

Minimal genome encoding proteins with constrained amino acid repertoire.

Nucleic Acids Res 2013 Oct 19;41(18):8444-51. Epub 2013 Jul 19.

A.A.Kharkevich Institute for Information Transmission Problems, Russian Academy of Sciences, Bolshoi Karetny per. 19, Moscow, 127994, Russia, Faculty of Bioengineering and Bioinformatics, Moscow State University, Vorobievy Gory 1-73, Moscow 119992, Russia, Stowers Institute for Medical Research, 1000 E 50th Street, Kansas City, MO 64110, USA, École Polytechnique, Palaiseau Cedex, 91128, France, O'Reilly Science Art, LLC, P.O. Box 416 Cardiff, CA 92007, USA and Department of Microbiology, Molecular Genetics and Immunology, Kansas University Medical Center, Kansas City, KS 66160, USA.

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http://dx.doi.org/10.1093/nar/gkt610DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3794579PMC
October 2013

Orthologous gene clusters and taxon signature genes for viruses of prokaryotes.

J Bacteriol 2013 Mar 7;195(5):941-50. Epub 2012 Dec 7.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA.

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http://dx.doi.org/10.1128/JB.01801-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3571318PMC
March 2013

The origin and evolution of G protein-coupled receptor kinases.

PLoS One 2012 19;7(3):e33806. Epub 2012 Mar 19.

Stowers Institute for Medical Research, Kansas City, Missouri, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0033806PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3307776PMC
July 2012

Grand challenges in bioinformatics and computational biology.

Authors:
Arcady Mushegian

Front Genet 2011 15;2:60. Epub 2011 Sep 15.

Stowers Institute Medical Research Kansas City, MO, USA.

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http://dx.doi.org/10.3389/fgene.2011.00060DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3268613PMC
October 2012

G protein-coupled receptor kinases: more than just kinases and not only for GPCRs.

Pharmacol Ther 2012 Jan 26;133(1):40-69. Epub 2011 Aug 26.

Department of Pharmacology, Vanderbilt University, 2200 Pierce Avenue, Preston Research Building, Rm. 454, Nashville, TN 37232, United States.

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http://dx.doi.org/10.1016/j.pharmthera.2011.08.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3241883PMC
January 2012

Computational methods for Gene Orthology inference.

Brief Bioinform 2011 Sep 19;12(5):379-91. Epub 2011 Jun 19.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA.

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http://dx.doi.org/10.1093/bib/bbr030DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3178053PMC
September 2011

Thematic minireview series on computational systems biology.

J Biol Chem 2011 Jul 12;286(27):23621-2. Epub 2011 May 12.

Stowers Institute for Medical Research, Kansas City, Missouri 64110, USA.

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http://dx.doi.org/10.1074/jbc.R111.260398DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3129140PMC
July 2011

Prp8, the pivotal protein of the spliceosomal catalytic center, evolved from a retroelement-encoded reverse transcriptase.

RNA 2011 May 25;17(5):799-808. Epub 2011 Mar 25.

Department of Microbiology, Montana State University, Bozeman, Montana 59717, USA.

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http://dx.doi.org/10.1261/rna.2396011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3078730PMC
May 2011

Evolutionarily conserved orthologous families in phages are relatively rare in their prokaryotic hosts.

J Bacteriol 2011 Apr 11;193(8):1806-14. Epub 2011 Feb 11.

Stowers Institute for Medical Research, Kansas City, Missouri 64110, USA.

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http://dx.doi.org/10.1128/JB.01311-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3133016PMC
April 2011

A polynomial-time algorithm computing lower and upper bounds of the rooted subtree prune and regraft distance.

J Comput Biol 2011 May 18;18(5):743-57. Epub 2010 Dec 18.

Bioinformatics Center, Stowers Institute for Medical Research, Kansas City, Missouri, USA.

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http://dx.doi.org/10.1089/cmb.2010.0045DOI Listing
May 2011

Measuring gene expression divergence: the distance to keep.

Biol Direct 2010 Aug 6;5:51. Epub 2010 Aug 6.

Department of Biostatistics and Computational Biology, University of Rochester Medical Center, Rochester, NY 14642, USA.

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http://dx.doi.org/10.1186/1745-6150-5-51DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2928186PMC
August 2010

Sequence-function analysis of the Sendai virus L protein domain VI.

Virology 2010 Sep 6;405(2):370-82. Epub 2010 Jul 6.

Department of Biology, University of North Carolina at Charlotte, Charlotte, NC 28223, USA.

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http://dx.doi.org/10.1016/j.virol.2010.06.019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2923248PMC
September 2010

New dimensions of the virus world discovered through metagenomics.

Trends Microbiol 2010 Jan 26;18(1):11-9. Epub 2009 Nov 26.

Stowers Institute of Medical Research, Kansas City, MO 64110, USA.

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http://dx.doi.org/10.1016/j.tim.2009.11.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3293453PMC
January 2010

Comparative genomics of ethanolamine utilization.

J Bacteriol 2009 Dec 25;191(23):7157-64. Epub 2009 Sep 25.

Department of Bioengineering and Bioinformatics, Moscow State University, Moscow, Russia.

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http://dx.doi.org/10.1128/JB.00838-09DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2786565PMC
December 2009

Detection of biochemical pathways by probabilistic matching of phyletic vectors.

PLoS One 2009 24;4(4):e5326. Epub 2009 Apr 24.

Stowers Institute for Medical Research, Kansas City, Missouri, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0005326PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2670198PMC
July 2009

A family of GFP-like proteins with different spectral properties in lancelet Branchiostoma floridae.

Biol Direct 2008 Jul 3;3:28. Epub 2008 Jul 3.

Stowers Institute for Medical Research, 1000 E 50th St,, Kansas City, MO 64110, USA.

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http://dx.doi.org/10.1186/1745-6150-3-28DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2467403PMC
July 2008

Gene content of LUCA, the last universal common ancestor.

Authors:
Arcady Mushegian

Front Biosci 2008 May 1;13:4657-66. Epub 2008 May 1.

Stowers Institute for Medical Research, 1000 E 50th St., Kansas City, Missouri 64110, USA.

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http://dx.doi.org/10.2741/3031DOI Listing
May 2008

2DE identification of proteins exhibiting turnover and phosphorylation dynamics during sea urchin egg activation.

Dev Biol 2008 Jan 13;313(2):630-47. Epub 2007 Nov 13.

Department of MCD Biology and Marine Science Institute, University of California, Santa Barbara, CA 93106-9610, USA.

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http://dx.doi.org/10.1016/j.ydbio.2007.10.053DOI Listing
January 2008

Evolutionary history of bacteriophages with double-stranded DNA genomes.

Biol Direct 2007 Dec 6;2:36. Epub 2007 Dec 6.

Stowers Institute for Medical Research, 1000 E 50th St,, Kansas City, MO 64110, USA.

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http://dx.doi.org/10.1186/1745-6150-2-36DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2222618PMC
December 2007

A topological algorithm for identification of structural domains of proteins.

BMC Bioinformatics 2007 Jul 3;8:237. Epub 2007 Jul 3.

Stowers Institute for Medical Research, Kansas City, MO 64110, USA.

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http://dx.doi.org/10.1186/1471-2105-8-237DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1933582PMC
July 2007

The genome of the sea urchin Strongylocentrotus purpuratus.

Authors:
Erica Sodergren George M Weinstock Eric H Davidson R Andrew Cameron Richard A Gibbs Robert C Angerer Lynne M Angerer Maria Ina Arnone David R Burgess Robert D Burke James A Coffman Michael Dean Maurice R Elphick Charles A Ettensohn Kathy R Foltz Amro Hamdoun Richard O Hynes William H Klein William Marzluff David R McClay Robert L Morris Arcady Mushegian Jonathan P Rast L Courtney Smith Michael C Thorndyke Victor D Vacquier Gary M Wessel Greg Wray Lan Zhang Christine G Elsik Olga Ermolaeva Wratko Hlavina Gretchen Hofmann Paul Kitts Melissa J Landrum Aaron J Mackey Donna Maglott Georgia Panopoulou Albert J Poustka Kim Pruitt Victor Sapojnikov Xingzhi Song Alexandre Souvorov Victor Solovyev Zheng Wei Charles A Whittaker Kim Worley K James Durbin Yufeng Shen Olivier Fedrigo David Garfield Ralph Haygood Alexander Primus Rahul Satija Tonya Severson Manuel L Gonzalez-Garay Andrew R Jackson Aleksandar Milosavljevic Mark Tong Christopher E Killian Brian T Livingston Fred H Wilt Nikki Adams Robert Bellé Seth Carbonneau Rocky Cheung Patrick Cormier Bertrand Cosson Jenifer Croce Antonio Fernandez-Guerra Anne-Marie Genevière Manisha Goel Hemant Kelkar Julia Morales Odile Mulner-Lorillon Anthony J Robertson Jared V Goldstone Bryan Cole David Epel Bert Gold Mark E Hahn Meredith Howard-Ashby Mark Scally John J Stegeman Erin L Allgood Jonah Cool Kyle M Judkins Shawn S McCafferty Ashlan M Musante Robert A Obar Amanda P Rawson Blair J Rossetti Ian R Gibbons Matthew P Hoffman Andrew Leone Sorin Istrail Stefan C Materna Manoj P Samanta Viktor Stolc Waraporn Tongprasit Qiang Tu Karl-Frederik Bergeron Bruce P Brandhorst James Whittle Kevin Berney David J Bottjer Cristina Calestani Kevin Peterson Elly Chow Qiu Autumn Yuan Eran Elhaik Dan Graur Justin T Reese Ian Bosdet Shin Heesun Marco A Marra Jacqueline Schein Michele K Anderson Virginia Brockton Katherine M Buckley Avis H Cohen Sebastian D Fugmann Taku Hibino Mariano Loza-Coll Audrey J Majeske Cynthia Messier Sham V Nair Zeev Pancer David P Terwilliger Cavit Agca Enrique Arboleda Nansheng Chen Allison M Churcher F Hallböök Glen W Humphrey Mohammed M Idris Takae Kiyama Shuguang Liang Dan Mellott Xiuqian Mu Greg Murray Robert P Olinski Florian Raible Matthew Rowe John S Taylor Kristin Tessmar-Raible D Wang Karen H Wilson Shunsuke Yaguchi Terry Gaasterland Blanca E Galindo Herath J Gunaratne Celina Juliano Masashi Kinukawa Gary W Moy Anna T Neill Mamoru Nomura Michael Raisch Anna Reade Michelle M Roux Jia L Song Yi-Hsien Su Ian K Townley Ekaterina Voronina Julian L Wong Gabriele Amore Margherita Branno Euan R Brown Vincenzo Cavalieri Véronique Duboc Louise Duloquin Constantin Flytzanis Christian Gache François Lapraz Thierry Lepage Annamaria Locascio Pedro Martinez Giorgio Matassi Valeria Matranga Ryan Range Francesca Rizzo Eric Röttinger Wendy Beane Cynthia Bradham Christine Byrum Tom Glenn Sofia Hussain Gerard Manning Esther Miranda Rebecca Thomason Katherine Walton Athula Wikramanayke Shu-Yu Wu Ronghui Xu C Titus Brown Lili Chen Rachel F Gray Pei Yun Lee Jongmin Nam Paola Oliveri Joel Smith Donna Muzny Stephanie Bell Joseph Chacko Andrew Cree Stacey Curry Clay Davis Huyen Dinh Shannon Dugan-Rocha Jerry Fowler Rachel Gill Cerrissa Hamilton Judith Hernandez Sandra Hines Jennifer Hume Laronda Jackson Angela Jolivet Christie Kovar Sandra Lee Lora Lewis George Miner Margaret Morgan Lynne V Nazareth Geoffrey Okwuonu David Parker Ling-Ling Pu Rachel Thorn Rita Wright

Science 2006 Nov;314(5801):941-52

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http://dx.doi.org/10.1126/science.1133609DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3159423PMC
November 2006

A complex oscillating network of signaling genes underlies the mouse segmentation clock.

Science 2006 Dec 9;314(5805):1595-8. Epub 2006 Nov 9.

Howard Hughes Medical Institute, Kansas City, MO 64110, USA.

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http://dx.doi.org/10.1126/science.1133141DOI Listing
December 2006

Intermediary metabolism in sea urchin: the first inferences from the genome sequence.

Dev Biol 2006 Dec 22;300(1):282-92. Epub 2006 Aug 22.

Stowers Institute for Medical Research, 1000 E. 50th St., Kansas City, MO 64110, USA.

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http://dx.doi.org/10.1016/j.ydbio.2006.08.030DOI Listing
December 2006

Molecular dissection of arginyltransferases guided by similarity to bacterial peptidoglycan synthases.

EMBO Rep 2006 Aug 7;7(8):800-5. Epub 2006 Jul 7.

Department of Animal Biology, University of Pennsylvania, 3800 Spruce Street, Philadelphia, Pennsylvania 19104, USA.

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http://embor.embopress.org/cgi/doi/10.1038/sj.embor.7400747
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http://dx.doi.org/10.1038/sj.embor.7400747DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1525158PMC
August 2006

Similarity searches in genome-wide numerical data sets.

Biol Direct 2006 May 30;1:13. Epub 2006 May 30.

Stowers Institute for Medical Research, 1000 E 50th St, Kansas City, MO 64110, USA.

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http://dx.doi.org/10.1186/1745-6150-1-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1489924PMC
May 2006

Protein repertoire of double-stranded DNA bacteriophages.

Virus Res 2006 Apr 21;117(1):68-80. Epub 2006 Feb 21.

Stowers Institute for Medical Research, 1000 E 50th St., Kansas City, MO 64110, USA.

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http://dx.doi.org/10.1016/j.virusres.2006.01.015DOI Listing
April 2006

The choice of optimal distance measure in genome-wide datasets.

Bioinformatics 2005 Nov;21 Suppl 3:iii3-11

Stowers Institute for Medical Research, Kansas City, MO 64110, USA.

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http://dx.doi.org/10.1093/bioinformatics/bti1201DOI Listing
November 2005

Detecting periodic patterns in unevenly spaced gene expression time series using Lomb-Scargle periodograms.

Bioinformatics 2006 Feb 22;22(3):310-6. Epub 2005 Nov 22.

Stowers Institute for Medical Research, 1000 East 50th Street, Kansas City, MO 64110, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/bti789DOI Listing
February 2006

Genome sequence and gene expression of Bacillus anthracis bacteriophage Fah.

J Mol Biol 2005 Nov 3;354(1):1-15. Epub 2005 Oct 3.

Waksman Institute for Microbiology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA.

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http://dx.doi.org/10.1016/j.jmb.2005.09.052DOI Listing
November 2005

Natural history of S-adenosylmethionine-binding proteins.

BMC Struct Biol 2005 Oct 14;5:19. Epub 2005 Oct 14.

Stowers Institute for Medical Research, Kansas City, MO 64110, USA.

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http://dx.doi.org/10.1186/1472-6807-5-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1282579PMC
October 2005

Protein content of minimal and ancestral ribosome.

Authors:
Arcady Mushegian

RNA 2005 Sep 25;11(9):1400-6. Epub 2005 Jul 25.

Stowers Institute for Medical Research, 1000 E. 50th St., Kansas City, MO 64110, USA.

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http://dx.doi.org/10.1261/rna.2180205DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1370823PMC
September 2005

Identification of Elongin C and Skp1 sequences that determine Cullin selection.

J Biol Chem 2004 Oct 27;279(41):43019-26. Epub 2004 Jul 27.

Stowers Institute for Medical Research, Kansas City, Missouri 64110, USA.

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http://dx.doi.org/10.1074/jbc.M408018200DOI Listing
October 2004

Displacements of prohead protease genes in the late operons of double-stranded-DNA bacteriophages.

J Bacteriol 2004 Jul;186(13):4369-75

Stowers Institute for Medical Research, Kansas City, Missouri 64110, USA.

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http://dx.doi.org/10.1128/JB.186.13.4369-4375.2004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC421614PMC
July 2004

Detection of evolutionarily stable fragments of cellular pathways by hierarchical clustering of phyletic patterns.

Genome Biol 2004 27;5(5):R32. Epub 2004 Apr 27.

Stowers Institute for Medical Research, 1000 E 50th Street, Kansas City, MO 64110, USA.

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http://dx.doi.org/10.1186/gb-2004-5-5-r32DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC416468PMC
October 2004

Chalcone isomerase family and fold: no longer unique to plants.

Protein Sci 2004 Feb 10;13(2):540-4. Epub 2004 Jan 10.

Stowers Institute for Medical Research, 1000 E. 50th Street, Kansas City, MO 64110, USA.

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http://dx.doi.org/10.1110/ps.03395404DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2286709PMC
February 2004

Distribution of words with a predefined range of mismatches to a DNA probe in bacterial genomes.

Bioinformatics 2004 Jan;20(1):67-74

Stowers Institute for Medical Research, Kansas City, MO 64110, USA.

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http://dx.doi.org/10.1093/bioinformatics/btg374DOI Listing
January 2004

Genome of Xanthomonas oryzae bacteriophage Xp10: an odd T-odd phage.

J Mol Biol 2003 Jul;330(4):735-48

Waksman Institute for Microbiology, The State University, 190 Frelinghuysen Road, Piscataway, NJ 08854, USA.

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http://dx.doi.org/10.1016/s0022-2836(03)00634-xDOI Listing
July 2003

Three monophyletic superfamilies account for the majority of the known glycosyltransferases.

Protein Sci 2003 Jul;12(7):1418-31

Stowers Institute for Medical Research, 1000 E. 50th Street, Kansas City, MO 64110, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2323934PMC
http://dx.doi.org/10.1110/ps.0302103DOI Listing
July 2003

The evolution of Runx genes I. A comparative study of sequences from phylogenetically diverse model organisms.

BMC Evol Biol 2003 Mar 24;3. Epub 2003 Mar 24.

Stowers Institute for Medical Research, 1000 E, 50th Street, Kansas City, MO 64110, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC153517PMC
http://dx.doi.org/10.1186/1471-2148-3-4DOI Listing
March 2003

Refining structural and functional predictions for secretasome components by comparative sequence analysis.

Authors:
Arcady Mushegian

Proteins 2002 Apr;47(1):69-74

Stowers Institute for Medical Research, Kansas City, Missouri, USA.

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April 2002