Antonio Del Sol

Antonio Del Sol

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Antonio Del Sol

Publications by authors named "Antonio Del Sol"

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Modeling Cellular Differentiation and Reprogramming with Gene Regulatory Networks.

Methods Mol Biol 2019 ;1975:37-51

Computational Biology Group, Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Esch-Belval, Luxembourg.

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http://dx.doi.org/10.1007/978-1-4939-9224-9_2DOI Listing
September 2019

Computational Strategies for Niche-Dependent Cell Conversion to Assist Stem Cell Therapy.

Trends Biotechnol 2019 Jul 16;37(7):687-696. Epub 2019 Feb 16.

Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg,7 Avenue des Hauts-Fourneaux, Esch-sur-Alzette, L-4362 Luxembourg City, Luxembourg.

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http://dx.doi.org/10.1016/j.tibtech.2019.01.005DOI Listing
July 2019

An integrative method to predict signalling perturbations for cellular transitions.

Nucleic Acids Res 2019 Jul;47(12):e72

Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Esch-sur-Alzette L-4362, Luxembourg.

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http://dx.doi.org/10.1093/nar/gkz232DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6614844PMC
July 2019

A general computational approach to predicting synergistic transcriptional cores that determine cell subpopulation identities.

Nucleic Acids Res 2019 04;47(7):3333-3343

Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, 6, avenue du Swing, L-4367 Belvaux, Luxembourg.

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http://dx.doi.org/10.1093/nar/gkz147DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6468312PMC
April 2019

A complex of the ubiquitin ligase TRIM32 and the deubiquitinase USP7 balances the level of c-Myc ubiquitination and thereby determines neural stem cell fate specification.

Cell Death Differ 2019 Mar 13;26(4):728-740. Epub 2018 Jun 13.

Developmental and Cellular Biology Group, Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, L-4367, Belvaux, Luxembourg.

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http://dx.doi.org/10.1038/s41418-018-0144-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6460386PMC
March 2019

SeesawPred: A Web Application for Predicting Cell-fate Determinants in Cell Differentiation.

Sci Rep 2018 09 6;8(1):13355. Epub 2018 Sep 6.

Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, 7. avenue des Hauts-Fourneaux, Esch-sur-Alzette, L-4362, Luxembourg City, Luxembourg.

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http://dx.doi.org/10.1038/s41598-018-31688-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6127256PMC
September 2018

Transcriptional synergy as an emergent property defining cell subpopulation identity enables population shift.

Nat Commun 2018 07 3;9(1):2595. Epub 2018 Jul 3.

Computational Biology Group, Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, 6, avenue du Swing, L-4367, Belvaux, Luxembourg.

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http://www.nature.com/articles/s41467-018-05016-8
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http://dx.doi.org/10.1038/s41467-018-05016-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6030214PMC
July 2018

Signaling-Dependent Control of Apical Membrane Size and Self-Renewal in Rosette-Stage Human Neuroepithelial Stem Cells.

Stem Cell Reports 2018 06 17;10(6):1751-1765. Epub 2018 May 17.

Research Institute for Molecular Pathology (IMP), Vienna Biocenter (VBC), Campus-Vienna-Biocenter 1, 1030 Vienna, Austria; DFG Research Center for Regenerative Therapies, Technische Universität Dresden, Fetscherstraße 105, 01307 Dresden, Germany; Max Planck Institute of Molecular Cell Biology and Genetics, Pfotenhauerstraße 108, 01307 Dresden, Germany.

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https://linkinghub.elsevier.com/retrieve/pii/S22136711183018
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http://dx.doi.org/10.1016/j.stemcr.2018.04.018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5993681PMC
June 2018

Integrative Computational Network Analysis Reveals Site-Specific Mediators of Inflammation in Alzheimer's Disease.

Front Physiol 2018 2;9:154. Epub 2018 Mar 2.

Computational Biology Group, Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Luxembourg, Luxembourg.

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http://dx.doi.org/10.3389/fphys.2018.00154DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5840953PMC
March 2018

The RNA Polymerase II Factor RPAP1 Is Critical for Mediator-Driven Transcription and Cell Identity.

Cell Rep 2018 01;22(2):396-410

Tumour Suppression Group, Spanish National Cancer Research Centre (CNIO), Madrid 28029, Spain; Cellular Plasticity and Disease Group, Institute for Research in Biomedicine (IRB Barcelona), Barcelona Institute of Science and Technology (BIST), Barcelona 08028, Spain; Catalan Institution for Research and Advanced Studies (ICREA), Barcelona 08010, Spain. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2017.12.062DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5775503PMC
January 2018

Absence of regulator of G-protein signaling 4 does not protect against dopamine neuron dysfunction and injury in the mouse 6-hydroxydopamine lesion model of Parkinson's disease.

Neurobiol Aging 2017 10 19;58:30-33. Epub 2017 Jun 19.

Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Esch-sur-Alzette, Luxembourg. Electronic address:

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http://dx.doi.org/10.1016/j.neurobiolaging.2017.06.008DOI Listing
October 2017

Bioinformatics Tools for Genome-Wide Epigenetic Research.

Adv Exp Med Biol 2017 ;978:489-512

Computational Biology Group, Luxembourg Centre for Systems Biomedicine, University of Luxembourg, 6 Avenue du Swing, 4366 Belvaux, Luxembourg.

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http://dx.doi.org/10.1007/978-3-319-53889-1_25DOI Listing
September 2017

RefBool: a reference-based algorithm for discretizing gene expression data.

Bioinformatics 2017 Jul;33(13):1953-1962

Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Belvaux, Luxembourg.

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http://dx.doi.org/10.1093/bioinformatics/btx111DOI Listing
July 2017

Prediction of Chromatin Accessibility in Gene-Regulatory Regions from Transcriptomics Data.

Sci Rep 2017 07 5;7(1):4660. Epub 2017 Jul 5.

Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Belvaux, Luxembourg.

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http://www.nature.com/articles/s41598-017-04929-6
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http://dx.doi.org/10.1038/s41598-017-04929-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5498635PMC
July 2017

Wnt/Tcf1 pathway restricts embryonic stem cell cycle through activation of the Ink4/Arf locus.

PLoS Genet 2017 03 27;13(3):e1006682. Epub 2017 Mar 27.

KU Leuven Stem Cell Institute, Department of Development and Regeneration, Stem Cell Signalling laboratory, Herestraat 49, Onderwijs en Navorsing 4, Leuven, Belgium.

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http://dx.doi.org/10.1371/journal.pgen.1006682DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5386305PMC
March 2017

Identifying niche-mediated regulatory factors of stem cell phenotypic state: a systems biology approach.

FEBS Lett 2017 Feb 30;591(3):560-569. Epub 2017 Jan 30.

Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Luxembourg.

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http://dx.doi.org/10.1002/1873-3468.12559DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5324585PMC
February 2017

Big-Data-Driven Stem Cell Science and Tissue Engineering: Vision and Unique Opportunities.

Cell Stem Cell 2017 02;20(2):157-160

Pharmacology Department and Cambridge Systems Biology Centre, University of Cambridge, Tennis Court Road, Cambridge CB2 1PD, UK. Electronic address:

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http://dx.doi.org/10.1016/j.stem.2017.01.006DOI Listing
February 2017

A Generalized Gene-Regulatory Network Model of Stem Cell Differentiation for Predicting Lineage Specifiers.

Stem Cell Reports 2016 09 18;7(3):307-315. Epub 2016 Aug 18.

Computational Biology Group, Luxembourg Centre for Systems Biomedicine, University of Luxembourg, 7 Avenue des Hauts Fourneaux, 4362 Esch-sur-Alzette, Luxembourg. Electronic address:

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http://dx.doi.org/10.1016/j.stemcr.2016.07.014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5034562PMC
September 2016

A systems biology approach to identify niche determinants of cellular phenotypes.

Stem Cell Res 2016 09 15;17(2):406-412. Epub 2016 Sep 15.

Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, 7, Avenue des Hauts-Fourneaux, L-4362 Esch-sur-Alzette, Luxembourg. Electronic address:

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http://dx.doi.org/10.1016/j.scr.2016.09.006DOI Listing
September 2016

Modeling heterogeneity in the pluripotent state: A promising strategy for improving the efficiency and fidelity of stem cell differentiation.

Bioessays 2016 08 19;38(8):758-68. Epub 2016 Jun 19.

Luxembourg Center for Systems Biomedicine (LCSB), University of Luxembourg, Campus Belval, Belvaux, Luxembourg.

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http://dx.doi.org/10.1002/bies.201600103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5094535PMC
August 2016

Discrete Logic Modelling Optimization to Contextualize Prior Knowledge Networks Using PRUNET.

PLoS One 2015 9;10(6):e0127216. Epub 2015 Jun 9.

Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Luxembourg.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0127216PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4461287PMC
April 2016

Identification of large-scale genomic variation in cancer genomes using in silico reference models.

Nucleic Acids Res 2016 Jan 11;44(1):e5. Epub 2015 Aug 11.

Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Campus Belval, 6, Avenue Swing, Belvaux L-4367, Luxembourg

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http://dx.doi.org/10.1093/nar/gkv828DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4705683PMC
January 2016

A differential network analysis approach for lineage specifier prediction in stem cell subpopulations.

NPJ Syst Biol Appl 2015 12;1:15012. Epub 2015 Nov 12.

Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Esch-sur-Alzette, Luxembourg.

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http://dx.doi.org/10.1038/npjsba.2015.12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5516870PMC
November 2015

Transcriptome of human foetal heart compared with cardiomyocytes from pluripotent stem cells.

Development 2015 Sep 24;142(18):3231-8. Epub 2015 Jul 24.

Dept. of Anatomy & Embryology, Leiden University Medical Center, Einthovenweg 20, Leiden 2333 ZC, The Netherlands

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http://dx.doi.org/10.1242/dev.123810DOI Listing
September 2015

A computational strategy for predicting lineage specifiers in stem cell subpopulations.

Stem Cell Res 2015 Sep 2;15(2):427-34. Epub 2015 Sep 2.

Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, 7, Avenue des Hauts-Fourneaux, L-4362 Esch-sur-Alzette, Luxembourg. Electronic address:

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http://dx.doi.org/10.1016/j.scr.2015.08.006DOI Listing
September 2015

TRIM32 modulates pluripotency entry and exit by directly regulating Oct4 stability.

Sci Rep 2015 Aug 26;5:13456. Epub 2015 Aug 26.

Westfälische Wilhelms-Universität Münster, ZMBE, Institute of Cell Biology, Stem Cell Biology and Regeneration Group, Von-Esmarch-Str. 56, 48149 Münster, Germany.

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http://dx.doi.org/10.1038/srep13456DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4642535PMC
August 2015

Sorting signal targeting mRNA into hepatic extracellular vesicles.

RNA Biol 2014 12;11(7):836-44. Epub 2014 Jun 12.

Metabolomics Unit; CIC bioGUNE; CIBERehd; Bizkaia Technology Park; Derio, Bizkaia Spain; IKERBASQUE; Basque Foundation for Science; Bilbao, Spain.

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http://dx.doi.org/10.4161/rna.29305DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4179958PMC
June 2015

The RNA helicase DDX6 regulates cell-fate specification in neural stem cells via miRNAs.

Nucleic Acids Res 2015 Mar 26;43(5):2638-54. Epub 2015 Feb 26.

Stem Cell Biology and Regeneration Group, Institute of Cell Biology, ZMBE, Westfälische Wilhelms-Universität Münster, D-48149 Münster, Germany Developmental and Cellular Biology Group, Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, L-4362 Esch-Belval, Luxembourg

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http://dx.doi.org/10.1093/nar/gkv138DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4357729PMC
March 2015

Gene regulatory network analysis reveals differences in site-specific cell fate determination in mammalian brain.

Front Cell Neurosci 2014 18;8:437. Epub 2014 Dec 18.

Computational Biology, Luxembourg Centre for Systems Biomedicine, University of Luxembourg Belval, Luxembourg.

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http://dx.doi.org/10.3389/fncel.2014.00437DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4270183PMC
January 2015

Hippocampal extracellular matrix levels and stochasticity in synaptic protein expression increase with age and are associated with age-dependent cognitive decline.

Mol Cell Proteomics 2014 Nov 20;13(11):2975-85. Epub 2014 Jul 20.

From the ‡Center for Neurogenomics and Cognitive Research, Neuroscience Campus Amsterdam, VU University, De Boelelaan 1085, 1081HV Amsterdam, The Netherlands;

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http://dx.doi.org/10.1074/mcp.M113.032086DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4223485PMC
November 2014

Concise review: a population shift view of cellular reprogramming.

Stem Cells 2014 Jun;32(6):1367-72

Luxembourg Centre for Systems Biomedicine, University of Luxembourg, L-4362 Esch-Belval and Life Sciences Research Unit, University of Luxembourg, Luxembourg, Luxembourg.

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http://dx.doi.org/10.1002/stem.1627DOI Listing
June 2014

FIGG: simulating populations of whole genome sequences for heterogeneous data analyses.

BMC Bioinformatics 2014 May 19;15:149. Epub 2014 May 19.

Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Campus Belval, 7, avenue des Hauts fourneaux, Esch/Alzette L-4362, Luxembourg.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-15-149DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4039316PMC
May 2014

Detecting cellular reprogramming determinants by differential stability analysis of gene regulatory networks.

BMC Syst Biol 2013 Dec 19;7:140. Epub 2013 Dec 19.

Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, L-4362, Esch-Belval, Luxembourg.

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http://dx.doi.org/10.1186/1752-0509-7-140DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3878265PMC
December 2013

A general strategy for cellular reprogramming: the importance of transcription factor cross-repression.

Stem Cells 2013 Oct;31(10):2127-35

Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, L-4362 Esch-Belval, University of Luxembourg, L-1511, Luxembourg, Luxembourg.

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http://doi.wiley.com/10.1002/stem.1473
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http://dx.doi.org/10.1002/stem.1473DOI Listing
October 2013

Global DNA methylation and transcriptional analyses of human ESC-derived cardiomyocytes.

Protein Cell 2013 Aug 27. Epub 2013 Aug 27.

Gene Expression Laboratory, Salk Institute for Biological Studies, 10010 North Torrey Pines Road, La Jolla, CA, 92037, USA.

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http://dx.doi.org/10.1007/s13238-013-3911-2DOI Listing
August 2013

Predicting missing expression values in gene regulatory networks using a discrete logic modeling optimization guided by network stable states.

Nucleic Acids Res 2013 Jan 31;41(1):e8. Epub 2012 Aug 31.

Luxembourg Centre for Systems Biomedicine, University of Luxembourg, L-4362 Esch-Belval and Life Sciences Research Unit, University of Luxembourg, L-1511 Luxembourg, Luxembourg.

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https://academic.oup.com/nar/article/41/1/e8/1162106
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http://dx.doi.org/10.1093/nar/gks785DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3592407PMC
January 2013

PLAU inferred from a correlation network is critical for suppressor function of regulatory T cells.

Mol Syst Biol 2012 ;8:624

Department of Infection Genetics, Helmholtz Centre for Infection Research (HZI), University of Veterinary Medicine Hannover, Braunschweig, Germany.

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http://dx.doi.org/10.1038/msb.2012.56DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531908PMC
January 2013

Gene regulatory network analysis supports inflammation as a key neurodegeneration process in prion disease.

BMC Syst Biol 2012 Oct 15;6:132. Epub 2012 Oct 15.

Luxembourg Center for Systems Biomedicine (LCSB), University of Luxembourg, Campus Belval, 7, avenue des Hauts fourneaux, Luxembourg L-4362, Luxembourg.

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http://bmcsystbiol.biomedcentral.com/articles/10.1186/1752-0
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http://dx.doi.org/10.1186/1752-0509-6-132DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3607922PMC
October 2012

Diseases as network perturbations.

Curr Opin Biotechnol 2010 Aug 13;21(4):566-71. Epub 2010 Aug 13.

Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Luxembourg.

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https://linkinghub.elsevier.com/retrieve/pii/S09581669100012
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http://dx.doi.org/10.1016/j.copbio.2010.07.010DOI Listing
August 2010

Methyl side-chain dynamics prediction based on protein structure.

Bioinformatics 2009 Oct 30;25(19):2552-8. Epub 2009 Jul 30.

Fujirebio Inc., Bioinformatics Research Unit, Research and Development Division, Komiya-cho, Hachioji-shi, Tokyo 192-0031, Japan.

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http://dx.doi.org/10.1093/bioinformatics/btp463DOI Listing
October 2009

The origin of allosteric functional modulation: multiple pre-existing pathways.

Structure 2009 Aug;17(8):1042-50

Bioinformatics Research Unit, Research and Development Division, Fujirebio Inc., Hachioji-shi, Tokyo, Japan.

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http://linkinghub.elsevier.com/retrieve/pii/S096921260900250
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http://dx.doi.org/10.1016/j.str.2009.06.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2749652PMC
August 2009

Energetic determinants of protein binding specificity: insights into protein interaction networks.

Proteomics 2009 Apr;9(7):1744-53

Bioinformatics Research Unit, Research and Development Division, Fujirebio, Inc., Komiya-cho, Hachioji-shi, Tokyo, Japan.

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http://dx.doi.org/10.1002/pmic.200800425DOI Listing
April 2009

Protein allostery, signal transmission and dynamics: a classification scheme of allosteric mechanisms.

Mol Biosyst 2009 Mar 6;5(3):207-16. Epub 2009 Jan 6.

Basic Research Program, SAIC-Frederick, Inc., Center for Cancer Research Nanobiology Program, NCI-Frederick, Frederick, MD 21702, USA.

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http://dx.doi.org/10.1039/b819720bDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2898650PMC
March 2009

Pravastatin: an evidence-based statin?

Expert Opin Drug Metab Toxicol 2008 Jun;4(6):821-5

VU University Medical Center, Department of Internal Medicine, De Boelelaan 1117, 1081 HV Amsterdam, The Netherlands.

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http://dx.doi.org/10.1517/17425255.4.6.821 DOI Listing
June 2008

Allostery: absence of a change in shape does not imply that allostery is not at play.

J Mol Biol 2008 Apr 29;378(1):1-11. Epub 2008 Feb 29.

Basic Research Program, SAIC-Frederick, Inc., Center for Cancer Research Nanobiology Program, NCI-Frederick, Frederick, MD 21702, USA.

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http://dx.doi.org/10.1016/j.jmb.2008.02.034DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2684958PMC
April 2008

The modular organization of domain structures: insights into protein-protein binding.

PLoS Comput Biol 2007 Dec;3(12):e239

Bioinformatics Research Unit, Research and Development Division, Fujirebio, Tokyo, Japan.

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https://dx.plos.org/10.1371/journal.pcbi.0030239
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http://dx.doi.org/10.1371/journal.pcbi.0030239DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2134966PMC
December 2007

Modular architecture of protein structures and allosteric communications: potential implications for signaling proteins and regulatory linkages.

Genome Biol 2007 ;8(5):R92

Bioinformatics Research Unit, Research and Development Division, Fujirebio Inc, Komiya-cho, Hachioji-shi, Tokyo 192-0031, Japan.

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http://dx.doi.org/10.1186/gb-2007-8-5-r92DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1929157PMC
September 2007

Ligand binding and circular permutation modify residue interaction network in DHFR.

PLoS Comput Biol 2007 Jun 11;3(6):e117. Epub 2007 May 11.

Department of Biochemistry and Molecular Biology, Howard University College of Medicine, Washington, District of Columbia, United States of America.

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https://dx.plos.org/10.1371/journal.pcbi.0030117
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http://dx.doi.org/10.1371/journal.pcbi.0030117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1892607PMC
June 2007

Residue centrality, functionally important residues, and active site shape: analysis of enzyme and non-enzyme families.

Protein Sci 2006 Sep 1;15(9):2120-8. Epub 2006 Aug 1.

Bioinformatics Research Unit, Research and Development Division, Tokyo, Japan.

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http://doi.wiley.com/10.1110/ps.062249106
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http://dx.doi.org/10.1110/ps.062249106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2242611PMC
September 2006

Residues crucial for maintaining short paths in network communication mediate signaling in proteins.

Mol Syst Biol 2006 2;2:2006.0019. Epub 2006 May 2.

Bioinformatics Research Unit, Research and Development Division, Fujirebio Inc., Hachioji-shi, Tokyo, Japan.

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http://msb.embopress.org/cgi/doi/10.1038/msb4100063
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http://dx.doi.org/10.1038/msb4100063DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1681495PMC
August 2006

TreeDet: a web server to explore sequence space.

Nucleic Acids Res 2006 Jul;34(Web Server issue):W110-5

Protein Design Group, CNB-CSIC C/Darwin n.3, 28049, Madrid, Spain.

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http://dx.doi.org/10.1093/nar/gkl203DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538789PMC
July 2006

Topology of small-world networks of protein-protein complex structures.

Bioinformatics 2005 Apr 19;21(8):1311-5. Epub 2005 Jan 19.

Bioinformatics Research Project, Research and Development Division, Fujirebio Inc., 51 Komiya-cho, Hachioji-shi, Tokyo 192-0031, Japan.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/bti167DOI Listing
April 2005

Small-world network approach to identify key residues in protein-protein interaction.

Proteins 2005 Feb;58(3):672-82

Bioinformatics Research Project, Frontier Research Division, Fujirebio Inc., 51 Komiya-cho, Hachioji-shi, Tokyo 192-0031, Japan.

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http://dx.doi.org/10.1002/prot.20348DOI Listing
February 2005

Predictive value of noninvasive measures of atherosclerosis for incident myocardial infarction: the Rotterdam Study.

Circulation 2004 Mar 1;109(9):1089-94. Epub 2004 Mar 1.

Department of Epidemiology and Biostatistics, Erasmus MC, University Medical Center, Rotterdam, The Netherlands.

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https://www.ahajournals.org/doi/10.1161/01.CIR.0000120708.59
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http://dx.doi.org/10.1161/01.CIR.0000120708.59903.1BDOI Listing
March 2004

Identification of amino acid residues crucial for chemokine receptor dimerization.

Nat Immunol 2004 Feb 11;5(2):216-23. Epub 2004 Jan 11.

Department of Immunology and Oncology, National Center of Biotechnology, Campus Universitario de Cantoblanco, E-28049 Madrid, Spain.

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http://www.nature.com/articles/ni1027
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http://dx.doi.org/10.1038/ni1027DOI Listing
February 2004

Automatic methods for predicting functionally important residues.

J Mol Biol 2003 Feb;326(4):1289-302

Protein Design Group, National Center for Biotechnology, Cantoblanco, Madrid 28049, Spain.

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http://dx.doi.org/10.1016/s0022-2836(02)01451-1DOI Listing
February 2003