Anton V Sinitskiy

Anton V Sinitskiy

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Anton V Sinitskiy

Anton V Sinitskiy

Publications by authors named "Anton V Sinitskiy"

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15Publications

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Intradomain Interactions in an NMDA Receptor Fragment Mediate N-Glycan Processing and Conformational Sampling.

Structure 2019 Jan 25;27(1):55-65.e3. Epub 2018 Oct 25.

Roy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, 2437 Pammel Drive Molecular Biology Building, Room 4210, Ames, IA 50011, USA. Electronic address:

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http://dx.doi.org/10.1016/j.str.2018.09.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6318028PMC
January 2019

Computer Simulations Predict High Structural Heterogeneity of Functional State of NMDA Receptors.

Biophys J 2018 Sep 28;115(5):841-852. Epub 2018 Jun 28.

Department of Bioengineering, Stanford University, Stanford, California. Electronic address:

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http://dx.doi.org/10.1016/j.bpj.2018.06.023DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6127453PMC
September 2018

Quantum mechanics/coarse-grained molecular mechanics (QM/CG-MM).

J Chem Phys 2018 Jan;148(1):014102

Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, USA.

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http://dx.doi.org/10.1063/1.5006810DOI Listing
January 2018

Theoretical restrictions on longest implicit time scales in Markov state models of biomolecular dynamics.

J Chem Phys 2018 Jan;148(4):044111

Department of Bioengineering, Stanford University, Stanford, California 94305, USA.

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http://dx.doi.org/10.1063/1.5005058DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5786450PMC
January 2018

Simulated Dynamics of Glycans on Ligand-Binding Domain of NMDA Receptors Reveals Strong Dynamic Coupling between Glycans and Protein Core.

J Chem Theory Comput 2017 Nov 31;13(11):5496-5505. Epub 2017 Oct 31.

Department of Chemistry, ‡Department of Computer Science, and §Department of Structural Biology, Stanford University , Stanford, California 94305, United States.

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http://dx.doi.org/10.1021/acs.jctc.7b00817DOI Listing
November 2017

Computationally Discovered Potentiating Role of Glycans on NMDA Receptors.

Sci Rep 2017 04 5;7:44578. Epub 2017 Apr 5.

Department of Chemistry, Stanford University, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1038/srep44578DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5381272PMC
April 2017

Highly Coarse-Grained Representations of Transmembrane Proteins.

J Chem Theory Comput 2017 Feb 18;13(2):935-944. Epub 2017 Jan 18.

Department of Chemistry, Institute for Biophysical Dynamics, and James Franck Institute, The University of Chicago , Chicago, Illinois 60637, United States.

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http://dx.doi.org/10.1021/acs.jctc.6b01076DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5312841PMC
February 2017

Cations Stiffen Actin Filaments by Adhering a Key Structural Element to Adjacent Subunits.

J Phys Chem B 2016 05 13;120(20):4558-67. Epub 2016 May 13.

Department of Chemistry, James Franck Institute, Institute for Biophysical Dynamics, and Computation Institute, The University of Chicago , Chicago, Illinois 60637, United States.

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http://dx.doi.org/10.1021/acs.jpcb.6b02741DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4959277PMC
May 2016

A reductionist perspective on quantum statistical mechanics: Coarse-graining of path integrals.

J Chem Phys 2015 Sep;143(9):094104

Department of Chemistry, James Franck Institute, Institute for Biophysical Dynamics, and Computation Institute, The University of Chicago, 5735 S. Ellis Ave., Chicago, Illinois 60637, USA.

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http://dx.doi.org/10.1063/1.4929790DOI Listing
September 2015

The Theory of Ultra-Coarse-Graining. 2. Numerical Implementation.

J Chem Theory Comput 2014 Dec 1;10(12):5265-75. Epub 2014 Dec 1.

Department of Chemistry, The James Franck Institute, Institute for Biophysical Dynamics, and Computation Institute, The University of Chicago , Chicago, Illinois 60637, United States.

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http://dx.doi.org/10.1021/ct500834tDOI Listing
December 2014

The Theory of Ultra-Coarse-Graining. 1. General Principles.

J Chem Theory Comput 2013 May 10;9(5):2466-80. Epub 2013 Apr 10.

Department of Chemistry and Institute for Biophysical Dynamics, ‡Computation Institute, §James Franck Institute, ∥Department of Mathematics, ⊥Department of Biochemistry and Molecular Biology, University of Chicago , Chicago, Illinois 60637, United States.

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http://dx.doi.org/10.1021/ct4000444DOI Listing
May 2013

Optimal number of coarse-grained sites in different components of large biomolecular complexes.

J Phys Chem B 2012 Jul 14;116(29):8363-74. Epub 2012 Feb 14.

Department of Chemistry, Institute for Biophysical Dynamics, University of Chicago, Chicago, Illinois 60637, United States.

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http://dx.doi.org/10.1021/jp2108895DOI Listing
July 2012

Phenomenological model of spin crossover in molecular crystals as derived from atom-atom potentials.

Phys Chem Chem Phys 2011 Aug 23;13(29):13238-46. Epub 2011 Jun 23.

Department of Chemistry, The University of Chicago, Chicago, Illinois 60637, USA.

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http://dx.doi.org/10.1039/c1cp20440hDOI Listing
August 2011

Strong correlation in hydrogen chains and lattices using the variational two-electron reduced density matrix method.

J Chem Phys 2010 Jul;133(1):014104

Department of Chemistry and The James Franck Institute, The University of Chicago, Chicago, Illinois 60637, USA.

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http://dx.doi.org/10.1063/1.3459059DOI Listing
July 2010

Modeling molecular crystals formed by spin-active metal complexes by atom-atom potentials.

Phys Chem Chem Phys 2009 Dec 23;11(46):10983-93. Epub 2009 Sep 23.

Poncelet Laboratory, Independent University of Moscow, Bolshoy Vlasyevskiy Pereulok 11, 119002, Moscow, Russia.

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http://dx.doi.org/10.1039/b908321aDOI Listing
December 2009