Anton Enright

Anton Enright

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Anton Enright

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Visualization and analysis of RNA-Seq assembly graphs.

Nucleic Acids Res 2019 Aug;47(14):7262-7275

Systems Immunology Group, The Roslin Institute and Royal (Dick) School of Veterinary Studies, The University of Edinburgh, Edinburgh EH25 9RG, UK.

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http://dx.doi.org/10.1093/nar/gkz599DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6698738PMC
August 2019

Non-coding RNA Expression, Function, and Variation during Drosophila Embryogenesis.

Curr Biol 2018 11 1;28(22):3547-3561.e9. Epub 2018 Nov 1.

Genome Biology Unit, European Molecular Biology Laboratory (EMBL), 69117 Heidelberg, Germany. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S09609822183122
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http://dx.doi.org/10.1016/j.cub.2018.09.026DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6264527PMC
November 2018

Defective germline reprogramming rewires the spermatogonial transcriptome.

Nat Struct Mol Biol 2018 05 30;25(5):394-404. Epub 2018 Apr 30.

MRC Centre for Regenerative Medicine, School of Biological Sciences, University of Edinburgh, Edinburgh, UK.

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http://dx.doi.org/10.1038/s41594-018-0058-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6086329PMC
May 2018

Extracellular vesicles are independent metabolic units with asparaginase activity.

Nat Chem Biol 2017 Sep 3;13(9):951-955. Epub 2017 Jul 3.

Wellcome Trust-Medical Research Council Stem Cell Institute, Department of Clinical Neurosciences-Division of Stem Cell Neurobiology, and NIHR Biomedical Research Centre, University of Cambridge, Cambridge, UK.

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http://dx.doi.org/10.1038/nchembio.2422DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5563455PMC
September 2017

The RNA mA Reader YTHDF2 Is Essential for the Post-transcriptional Regulation of the Maternal Transcriptome and Oocyte Competence.

Mol Cell 2017 Sep 31;67(6):1059-1067.e4. Epub 2017 Aug 31.

MRC Centre for Regenerative Medicine, Institute for Stem Cell Research, School of Biological Sciences, University of Edinburgh, 5 Little France Drive, Edinburgh EH16 4UU, UK; European Molecular Biology Laboratory (EMBL), Mouse Biology Unit, Via Ramarini 32, Monterotondo Scalo 00015, Italy. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S10972765173057
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http://dx.doi.org/10.1016/j.molcel.2017.08.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5613143PMC
September 2017

mRNA 3' uridylation and poly(A) tail length sculpt the mammalian maternal transcriptome.

Nature 2017 08 9;548(7667):347-351. Epub 2017 Aug 9.

MRC Centre for Regenerative Medicine, Institute for Stem Cell Research, School of Biological Sciences, University of Edinburgh, Edinburgh EH16 4UU, UK.

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http://dx.doi.org/10.1038/nature23318DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5768236PMC
August 2017

A MILI-independent piRNA biogenesis pathway empowers partial germline reprogramming.

Nat Struct Mol Biol 2017 Jul 22;24(7):604-606. Epub 2017 May 22.

European Molecular Biology Laboratory (EMBL), Monterotondo, Italy.

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http://dx.doi.org/10.1038/nsmb.3413DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5898609PMC
July 2017

3' Uridylation controls mature microRNA turnover during CD4 T-cell activation.

RNA 2017 06 28;23(6):882-891. Epub 2017 Mar 28.

Instituto de Investigación Sanitaria Princesa, Hospital Universitario de la Princesa, Universidad Autónoma de Madrid, Madrid 28006, Spain.

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http://dx.doi.org/10.1261/rna.060095.116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5435861PMC
June 2017

Large-scale analysis of microRNA expression, epi-transcriptomic features and biogenesis.

Nucleic Acids Res 2017 02;45(3):1079-1090

EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK

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https://academic.oup.com/nar/article/45/3/1079/2605688
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http://dx.doi.org/10.1093/nar/gkw1031DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5388392PMC
February 2017

Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future.

Gigascience 2015 25;4:38. Epub 2015 Aug 25.

Bioinformatics & Computational Biology Laboratory, Division of Basic Sciences, University of Crete, Medical School, 70013 Heraklion, Crete Greece.

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http://dx.doi.org/10.1186/s13742-015-0077-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4548842PMC
July 2016

spongeScan: A web for detecting microRNA binding elements in lncRNA sequences.

Nucleic Acids Res 2016 07 19;44(W1):W176-80. Epub 2016 May 19.

Genomics of Gene Expression Lab, Centro de Investigación Príncipe Felipe (CIPF), 46012 Valencia, Spain Microbiology and Cell Science, IFAS, University of Florida, Gainesville, USA

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http://dx.doi.org/10.1093/nar/gkw443DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987953PMC
July 2016

Exploring regulatory networks of miR-96 in the developing inner ear.

Sci Rep 2016 Mar 18;6:23363. Epub 2016 Mar 18.

Wolfson Centre for Age-Related Diseases, King's College London, Guy's Campus, London SE1 1UL, UK.

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http://dx.doi.org/10.1038/srep23363DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4796898PMC
March 2016

Activation of the TGFβ pathway impairs endothelial to haematopoietic transition.

Sci Rep 2016 Feb 19;6:21518. Epub 2016 Feb 19.

European Molecular Biology Laboratory, Mouse Biology Unit, Via Ercole Ramarini 32, 00015 Monterotondo, Italy.

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http://dx.doi.org/10.1038/srep21518DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4759586PMC
February 2016

High-density P300 enhancers control cell state transitions.

BMC Genomics 2015 Nov 6;16:903. Epub 2015 Nov 6.

Integrative Immunobiology Unit, Laboratory of Immunology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.

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http://www.biomedcentral.com/content/pdf/s12864-015-1905-6.p
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http://www.biomedcentral.com/1471-2164/16/903
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http://dx.doi.org/10.1186/s12864-015-1905-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4636788PMC
November 2015

Chimira: analysis of small RNA sequencing data and microRNA modifications.

Bioinformatics 2015 Oct 20;31(20):3365-7. Epub 2015 Jun 20.

European Molecular Biology Laboratory-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.

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http://dx.doi.org/10.1093/bioinformatics/btv380DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4595902PMC
October 2015

Visualisation of BioPAX Networks using BioLayout Express (3D).

F1000Res 2014 20;3:246. Epub 2014 Oct 20.

The Roslin Institute and Royal (Dick) School of Veterinary Studies, The University of Edinburgh, Midlothian, Scotland, EH25 9RG, UK.

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http://dx.doi.org/10.12688/f1000research.5499.1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4406191PMC
May 2015

Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing.

Nat Methods 2015 Apr 9;12(4):339-42. Epub 2015 Mar 9.

1] Garvan Institute of Medical Research, Sydney, Australia. [2] St Vincents Clinical School, Faculty of Medicine, University of New South Wales, Sydney, Australia.

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http://dx.doi.org/10.1038/nmeth.3321DOI Listing
April 2015

Solid tumors of childhood display specific serum microRNA profiles.

Cancer Epidemiol Biomarkers Prev 2015 Feb 21;24(2):350-60. Epub 2014 Nov 21.

Department of Pathology, University of Cambridge, Tennis Court Road, Cambridge, United Kingdom. Department of Histopathology, Addenbrooke's Hospital, Hills Road, Cambridge, United Kingdom.

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http://dx.doi.org/10.1158/1055-9965.EPI-14-0669DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4340540PMC
February 2015

Extracellular vesicles from neural stem cells transfer IFN-γ via Ifngr1 to activate Stat1 signaling in target cells.

Mol Cell 2014 Oct 18;56(2):193-204. Epub 2014 Sep 18.

John van Geest Centre for Brain Repair, Department of Clinical Neurosciences, and NIHR Biomedical Research Centre, University of Cambridge, CB2 0PY Cambridge, UK; Wellcome Trust-Medical Research Council Stem Cell Institute, Cambridge, UK. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2014.08.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4578249PMC
October 2014

Kraken: a set of tools for quality control and analysis of high-throughput sequence data.

Methods 2013 Sep 29;63(1):41-9. Epub 2013 Jun 29.

EMBL - European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.

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http://dx.doi.org/10.1016/j.ymeth.2013.06.027DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3991327PMC
September 2013

Detecting and comparing non-coding RNAs in the high-throughput era.

Int J Mol Sci 2013 Jul 24;14(8):15423-58. Epub 2013 Jul 24.

European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

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http://dx.doi.org/10.3390/ijms140815423DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3759867PMC
July 2013

The zebrafish reference genome sequence and its relationship to the human genome.

Authors:
Kerstin Howe Matthew D Clark Carlos F Torroja James Torrance Camille Berthelot Matthieu Muffato John E Collins Sean Humphray Karen McLaren Lucy Matthews Stuart McLaren Ian Sealy Mario Caccamo Carol Churcher Carol Scott Jeffrey C Barrett Romke Koch Gerd-Jörg Rauch Simon White William Chow Britt Kilian Leonor T Quintais José A Guerra-Assunção Yi Zhou Yong Gu Jennifer Yen Jan-Hinnerk Vogel Tina Eyre Seth Redmond Ruby Banerjee Jianxiang Chi Beiyuan Fu Elizabeth Langley Sean F Maguire Gavin K Laird David Lloyd Emma Kenyon Sarah Donaldson Harminder Sehra Jeff Almeida-King Jane Loveland Stephen Trevanion Matt Jones Mike Quail Dave Willey Adrienne Hunt John Burton Sarah Sims Kirsten McLay Bob Plumb Joy Davis Chris Clee Karen Oliver Richard Clark Clare Riddle David Elliot David Eliott Glen Threadgold Glenn Harden Darren Ware Sharmin Begum Beverley Mortimore Beverly Mortimer Giselle Kerry Paul Heath Benjamin Phillimore Alan Tracey Nicole Corby Matthew Dunn Christopher Johnson Jonathan Wood Susan Clark Sarah Pelan Guy Griffiths Michelle Smith Rebecca Glithero Philip Howden Nicholas Barker Christine Lloyd Christopher Stevens Joanna Harley Karen Holt Georgios Panagiotidis Jamieson Lovell Helen Beasley Carl Henderson Daria Gordon Katherine Auger Deborah Wright Joanna Collins Claire Raisen Lauren Dyer Kenric Leung Lauren Robertson Kirsty Ambridge Daniel Leongamornlert Sarah McGuire Ruth Gilderthorp Coline Griffiths Deepa Manthravadi Sarah Nichol Gary Barker Siobhan Whitehead Michael Kay Jacqueline Brown Clare Murnane Emma Gray Matthew Humphries Neil Sycamore Darren Barker David Saunders Justene Wallis Anne Babbage Sian Hammond Maryam Mashreghi-Mohammadi Lucy Barr Sancha Martin Paul Wray Andrew Ellington Nicholas Matthews Matthew Ellwood Rebecca Woodmansey Graham Clark James D Cooper James Cooper Anthony Tromans Darren Grafham Carl Skuce Richard Pandian Robert Andrews Elliot Harrison Andrew Kimberley Jane Garnett Nigel Fosker Rebekah Hall Patrick Garner Daniel Kelly Christine Bird Sophie Palmer Ines Gehring Andrea Berger Christopher M Dooley Zübeyde Ersan-Ürün Cigdem Eser Horst Geiger Maria Geisler Lena Karotki Anette Kirn Judith Konantz Martina Konantz Martina Oberländer Silke Rudolph-Geiger Mathias Teucke Christa Lanz Günter Raddatz Kazutoyo Osoegawa Baoli Zhu Amanda Rapp Sara Widaa Cordelia Langford Fengtang Yang Stephan C Schuster Nigel P Carter Jennifer Harrow Zemin Ning Javier Herrero Steve M J Searle Anton Enright Robert Geisler Ronald H A Plasterk Charles Lee Monte Westerfield Pieter J de Jong Leonard I Zon John H Postlethwait Christiane Nüsslein-Volhard Tim J P Hubbard Hugues Roest Crollius Jane Rogers Derek L Stemple

Nature 2013 Apr 17;496(7446):498-503. Epub 2013 Apr 17.

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.

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http://dx.doi.org/10.1038/nature12111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3703927PMC
April 2013

A Neuronal Transcriptome Response Involving Stress Pathways is Buffered by Neuronal microRNAs.

Front Neurosci 2012 30;6:156. Epub 2012 Oct 30.

Genes to Cognition Programme, Wellcome Trust Sanger Institute Cambridge, UK ; RNA Genomics Lab, European Molecular Biology Laboratory-European Bioinformatics Institute Cambridge, UK.

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http://dx.doi.org/10.3389/fnins.2012.00156DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3483788PMC
November 2012

Large-scale analysis of microRNA evolution.

BMC Genomics 2012 Jun 6;13:218. Epub 2012 Jun 6.

EMBL - European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, United Kingdom.

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http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2164-13-218DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3497579PMC
June 2012

Evolutionary and functional insights into Leishmania META1: evidence for lateral gene transfer and a role for META1 in secretion.

BMC Evol Biol 2011 Nov 17;11:334. Epub 2011 Nov 17.

Centre for Cellular and Molecular Biology, Council for Scientific and Industrial Research, Uppal Road, Hyderabad - 500 007, Andhra Pradesh, India.

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http://dx.doi.org/10.1186/1471-2148-11-334DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3270026PMC
November 2011

The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements.

Nature 2011 Oct 23;480(7376):259-63. Epub 2011 Oct 23.

European Molecular Biology Laboratory, Mouse Biology Unit, Via Ramarini 32, Monterotondo Scalo 00015, Italy.

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http://www.nature.com/articles/nature10547
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http://dx.doi.org/10.1038/nature10547DOI Listing
October 2011

Messenger RNA and microRNA profiling during early mouse EB formation.

Gene Expr Patterns 2011 Jun-Jul;11(5-6):334-44. Epub 2011 Apr 1.

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, United Kingdom.

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http://dx.doi.org/10.1016/j.gep.2011.03.004DOI Listing
September 2011

SylArray: a web server for automated detection of miRNA effects from expression data.

Bioinformatics 2010 Nov 24;26(22):2900-1. Epub 2010 Sep 24.

EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

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http://dx.doi.org/10.1093/bioinformatics/btq545DOI Listing
November 2010

Efficient inhibition of miR-155 function in vivo by peptide nucleic acids.

Nucleic Acids Res 2010 Jul 11;38(13):4466-75. Epub 2010 Mar 11.

Medical Research Council, Laboratory of Molecular Biology, Cambridge CB2 0QH, UK.

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http://dx.doi.org/10.1093/nar/gkq160DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2910044PMC
July 2010

The miR-144/451 locus is required for erythroid homeostasis.

J Exp Med 2010 Jul 31;207(7):1351-8. Epub 2010 May 31.

European Molecular Biology Laboratory, Mouse Biology Unit, Monterotondo Scalo, 00015, Italy.

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http://dx.doi.org/10.1084/jem.20100458DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2901075PMC
July 2010

iMotifs: an integrated sequence motif visualization and analysis environment.

Bioinformatics 2010 Mar 26;26(6):843-4. Epub 2010 Jan 26.

Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, UK.

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http://dx.doi.org/10.1093/bioinformatics/btq026DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2832821PMC
March 2010

Systematic analysis of off-target effects in an RNAi screen reveals microRNAs affecting sensitivity to TRAIL-induced apoptosis.

BMC Genomics 2010 Mar 15;11:175. Epub 2010 Mar 15.

Work performed at: Wellcome Trust Sanger Institute, The Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2164-11-175DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2996961PMC
March 2010

MapMi: automated mapping of microRNA loci.

BMC Bioinformatics 2010 Mar 16;11:133. Epub 2010 Mar 16.

European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

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http://dx.doi.org/10.1186/1471-2105-11-133DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2858034PMC
March 2010

Network visualization and analysis of gene expression data using BioLayout Express(3D).

Nat Protoc 2009 1;4(10):1535-50. Epub 2009 Oct 1.

The Roslin Institute, R(D)SVS, University of Edinburgh, Roslin BioCentre, Midlothian, Scotland, UK.

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http://dx.doi.org/10.1038/nprot.2009.177DOI Listing
December 2009

Zebrafish miR-1 and miR-133 shape muscle gene expression and regulate sarcomeric actin organization.

Genes Dev 2009 Mar 24;23(5):619-32. Epub 2009 Feb 24.

Department of Genetics, Yale University School of Medicine, New Haven, Connecticut 06510, USA.

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http://dx.doi.org/10.1101/gad.1760209DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2658521PMC
March 2009

Detecting microRNA binding and siRNA off-target effects from expression data.

Nat Methods 2008 Dec 2;5(12):1023-5. Epub 2008 Nov 2.

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK.

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http://dx.doi.org/10.1038/nmeth.1267DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2635553PMC
December 2008

Annotation of mammalian primary microRNAs.

BMC Genomics 2008 Nov 27;9:564. Epub 2008 Nov 27.

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.1186/1471-2164-9-564DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2632650PMC
November 2008

A logic-based diagram of signalling pathways central to macrophage activation.

BMC Syst Biol 2008 Apr 23;2:36. Epub 2008 Apr 23.

Division of Pathway Medicine, University of Edinburgh, The Chancellor's Building, College of Medicine, 49 Little France Crescent, Edinburgh, EH16 4SB, UK.

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http://bmcsystbiol.biomedcentral.com/articles/10.1186/1752-0
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http://dx.doi.org/10.1186/1752-0509-2-36DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2383880PMC
April 2008

miRBase: tools for microRNA genomics.

Nucleic Acids Res 2008 Jan 8;36(Database issue):D154-8. Epub 2007 Nov 8.

Faculty of Life Sciences, University of Manchester, Michael Smith Building, Oxford Road, Manchester, UK.

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http://dx.doi.org/10.1093/nar/gkm952DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238936PMC
January 2008

Computational prediction of protein-protein interactions.

Mol Biotechnol 2008 Jan 14;38(1):1-17. Epub 2007 Aug 14.

Department of Physiology and Biophysics and Institute for Computational Biomedicine, Weill Medical College of Cornell University, 1300 York Avenue, New York, NY 10021, USA.

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http://dx.doi.org/10.1007/s12033-007-0069-2DOI Listing
January 2008

Denoising inferred functional association networks obtained by gene fusion analysis.

BMC Genomics 2007 Dec 14;8:460. Epub 2007 Dec 14.

Computational Genomics Group, The European Bioinformatics Institute, EMBL Cambridge Outstation, Cambridge CB10 1SD, UK.

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http://dx.doi.org/10.1186/1471-2164-8-460DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2248599PMC
December 2007

Genomic analysis of human microRNA transcripts.

Proc Natl Acad Sci U S A 2007 Nov 26;104(45):17719-24. Epub 2007 Oct 26.

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, United Kingdom.

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http://dx.doi.org/10.1073/pnas.0703890104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2077053PMC
November 2007

A Slicer-independent role for Argonaute 2 in hematopoiesis and the microRNA pathway.

Genes Dev 2007 Aug 12;21(16):1999-2004. Epub 2007 Jul 12.

The Laboratory for Lymphocyte Signaling, The Rockefeller University, New York, New York 10021, USA.

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http://dx.doi.org/10.1101/gad.1565607DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1948855PMC
August 2007

Prediction of microRNA targets.

Drug Discov Today 2007 Jun 26;12(11-12):452-8. Epub 2007 Apr 26.

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.1016/j.drudis.2007.04.002DOI Listing
June 2007

RNA editing of human microRNAs.

Genome Biol 2006 4;7(4):R27. Epub 2006 Apr 4.

Cancer Genome Project, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK.

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http://dx.doi.org/10.1186/gb-2006-7-4-r27DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1557993PMC
September 2006

Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs.

Science 2006 Apr 16;312(5770):75-9. Epub 2006 Feb 16.

Developmental Genetics Program, Skirball Institute of Biomolecular Medicine, and Department of Cell Biology, New York University School of Medicine, New York, NY 10016, USA.

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http://dx.doi.org/10.1126/science.1122689DOI Listing
April 2006

miRBase: microRNA sequences, targets and gene nomenclature.

Nucleic Acids Res 2006 Jan;34(Database issue):D140-4

The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.

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http://dx.doi.org/10.1093/nar/gkj112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347474PMC
January 2006

BioLayout(Java): versatile network visualisation of structural and functional relationships.

Appl Bioinformatics 2005 ;4(1):71-4

Computational Genomics Group, European Bioinformatics Institute, EMBL Cambridge Outstation, Cambridge, UK.

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December 2005

CoGenT++: an extensive and extensible data environment for computational genomics.

Bioinformatics 2005 Oct;21(19):3806-10

Computational Genomics Group, The European Bioinformatics Institute EMBL, Cambridge Outstation, Cambridge CB10 1SD, UK.

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http://dx.doi.org/10.1093/bioinformatics/bti579DOI Listing
October 2005

MagicMatch--cross-referencing sequence identifiers across databases.

Bioinformatics 2005 Aug 16;21(16):3429-30. Epub 2005 Jun 16.

Computational Genomics Group, The European Bioinformatics Institute, EMBL Cambridge Outstation, Cambridge CB10 1SD, UK.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/bti548DOI Listing
August 2005

MicroRNAs regulate brain morphogenesis in zebrafish.

Science 2005 May 17;308(5723):833-8. Epub 2005 Mar 17.

Developmental Genetics Program, Skirball Institute of Biomolecular Medicine and Department of Cell Biology, New York University School of Medicine, New York, NY 10016, USA.

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http://dx.doi.org/10.1126/science.1109020DOI Listing
May 2005

Human MicroRNA targets.

PLoS Biol 2004 Nov 5;2(11):e363. Epub 2004 Oct 5.

Computational Biology Center, Memorial Sloan-Kettering Cancer Center, New York, New York, USA.

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http://dx.doi.org/10.1371/journal.pbio.0020363DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC521178PMC
November 2004

Identification of virus-encoded microRNAs.

Science 2004 Apr;304(5671):734-6

Laboratory of RNA Molecular Biology, The Rockefeller University, 1230 York Avenue, Box 186, New York, NY 10021, USA.

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http://dx.doi.org/10.1126/science.1096781DOI Listing
April 2004

MicroRNA targets in Drosophila.

Genome Biol 2003 12;5(1):R1. Epub 2003 Dec 12.

Computational Biology Center, Memorial Sloan-Kettering Cancer Center, 1275 York Avenue, New York, NY 10021, USA.

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http://dx.doi.org/10.1186/gb-2003-5-1-r1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC395733PMC
March 2004

Detection of functional modules from protein interaction networks.

Proteins 2004 Jan;54(1):49-57

Computational Genomics Group, The European Bioinformatics Institute, Cambridge, United Kingdom.

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http://dx.doi.org/10.1002/prot.10505DOI Listing
January 2004

Protein families and TRIBES in genome sequence space.

Nucleic Acids Res 2003 Aug;31(15):4632-8

Computational Genomics Group, The European Bioinformatics Institute, EMBL Cambridge Outstation, Cambridge CB10 1SD, UK.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC169885PMC
http://dx.doi.org/10.1093/nar/gkg495DOI Listing
August 2003

Classification schemes for protein structure and function.

Nat Rev Genet 2003 Jul;4(7):508-19

Computational Genomics Group, The European Bioinformatics Institute, EMBL Cambridge Outstation, Cambridge CB10 1SD, UK.

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http://dx.doi.org/10.1038/nrg1113DOI Listing
July 2003

COmplete GENome Tracking (COGENT): a flexible data environment for computational genomics.

Bioinformatics 2003 Jul;19(11):1451-2

Computational Genomics Group, The European Bioinformatics Institute, EMBL Cambridge Outstation, Welcome Trust Genome Campus, Cambridge CB10 1SD, UK.

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http://dx.doi.org/10.1093/bioinformatics/btg161DOI Listing
July 2003

Myriads of protein families, and still counting.

Genome Biol 2003 28;4(2):401. Epub 2003 Jan 28.

Computational Genomics Group, The European Bioinformatics Institute, EMBL Cambridge Outstation, Cambridge, UK.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC151299PMC
http://dx.doi.org/10.1186/gb-2003-4-2-401DOI Listing
March 2003