Publications by authors named "Antoine Danchin"

100Publications

[Biochemical and statistical lessons from the evolution of the SARS-CoV-2 virus: paths for novel antiviral warfare].

C R Biol 2020 Oct 9;343(2):177-209. Epub 2020 Oct 9.

Kodikos Labs / Stellate Therapeutics, Institut Cochin, 24 rue du Faubourg Saint-Jacques, 75014 Paris, France.

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http://dx.doi.org/10.5802/crbiol.16DOI Listing
October 2020

Evaluating the probability of CRISPR-based gene drive contaminating another species.

Evol Appl 2020 Sep 17;13(8):1888-1905. Epub 2020 Apr 17.

ISEM Université de Montpellier CNRS EPHE IRD Montpellier France.

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http://dx.doi.org/10.1111/eva.12939DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7463340PMC
September 2020

Phylogenomics of expanding uncultured environmental Tenericutes provides insights into their pathogenicity and evolutionary relationship with Bacilli.

BMC Genomics 2020 Jun 17;21(1):408. Epub 2020 Jun 17.

Institute of Deep Sea Science and Engineering, Chinese Academy of Sciences, No. 28, Luhuitou Road, Sanya, Hai Nan, P.R. China.

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http://dx.doi.org/10.1186/s12864-020-06807-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7301438PMC
June 2020

SARS-CoV-2 variants: Relevance for symptom granularity, epidemiology, immunity (herd, vaccines), virus origin and containment?

Environ Microbiol 2020 06 19;22(6):2001-2006. Epub 2020 May 19.

Institute of Microbiology, Technical University of Braunschweig, Braunschweig, Germany.

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http://dx.doi.org/10.1111/1462-2920.15053DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7267449PMC
June 2020

Cytosine drives evolution of SARS-CoV-2.

Environ Microbiol 2020 06 27;22(6):1977-1985. Epub 2020 Apr 27.

TESSSI, The European Syndicate of Synthetic Scientists and Industrialists, 81 rue Réaumur, 75002, Paris, France.

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http://dx.doi.org/10.1111/1462-2920.15025DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7262064PMC
June 2020

Isobiology: A Variational Principle for Exploring Synthetic Life.

Authors:
Antoine Danchin

Chembiochem 2020 Jul 2;21(13):1781-1792. Epub 2020 Apr 2.

Stellate Therapeutics, Institut Cochin, 24 rue du Faubourg Saint-Jacques, 75014, Paris, France.

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http://dx.doi.org/10.1002/cbic.202000060DOI Listing
July 2020

One-carbon metabolism, folate, zinc and translation.

Microb Biotechnol 2020 07 9;13(4):899-925. Epub 2020 Mar 9.

Shenzhen Key Laboratory of Microbial Genetic Engineering, College of Life Sciences and Oceanology, Shenzhen University, 1066 Xueyuan Rd, 518055, Shenzhen, China.

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http://dx.doi.org/10.1111/1751-7915.13550DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7264889PMC
July 2020

Zinc, an unexpected integrator of metabolism?

Authors:
Antoine Danchin

Microb Biotechnol 2020 07 9;13(4):895-898. Epub 2020 Mar 9.

AMAbiotics SAS, Institut Cochin, 24 rue du Faubourg Saint-Jacques, 75014, Paris, France.

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http://dx.doi.org/10.1111/1751-7915.13549DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7264881PMC
July 2020

Genomic Characterization of a Novel Gut Symbiont From the Hadal Snailfish.

Front Microbiol 2019 10;10:2978. Epub 2020 Jan 10.

Institute of Deep-Sea Science and Engineering, Chinese Academy of Sciences, Sanya, China.

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http://dx.doi.org/10.3389/fmicb.2019.02978DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6965317PMC
January 2020

Why Nature Chose Potassium.

J Mol Evol 2019 12 28;87(9-10):271-288. Epub 2019 Oct 28.

The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kgs. Lyngby, Denmark.

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http://dx.doi.org/10.1007/s00239-019-09915-2DOI Listing
December 2019

Mutations in the Global Transcription Factor CRP/CAP: Insights from Experimental Evolution and Deep Sequencing.

Comput Struct Biotechnol J 2019 18;17:730-736. Epub 2019 Jun 18.

Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kemitorvet B220, DK-2800 Kgs. Lyngby, Denmark.

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http://dx.doi.org/10.1016/j.csbj.2019.05.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6603298PMC
June 2019

Omnipresent Maxwell's demons orchestrate information management in living cells.

Microb Biotechnol 2019 03;12(2):210-242

Institute of Cardiometabolism and Nutrition, Hôpital de la Pitié-Salpêtrière, 47 Boulevard de l'Hôpital, 75013, Paris, France.

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http://dx.doi.org/10.1111/1751-7915.13378DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6389857PMC
March 2019

Hypothesis, analysis and synthesis, it's all Greek to me.

Elife 2019 02 20;8. Epub 2019 Feb 20.

Bioinformatics Research Laboratory, Department of Biological Sciences, University of Cyprus, Nicosia, Cyprus.

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http://dx.doi.org/10.7554/eLife.43514DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6382348PMC
February 2019

Deciphering global gene expression and regulation strategy in Escherichia coli during carbon limitation.

Microb Biotechnol 2019 03 11;12(2):360-376. Epub 2018 Dec 11.

Shenzhen Key Laboratory of Microbial Genetic Engineering, College of Life Sciences and Oceanology, Shenzhen University, 1066 Xueyuan Rd, Shenzhen, 518055, Guangdong, P. R. China.

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http://dx.doi.org/10.1111/1751-7915.13343DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6390033PMC
March 2019

[The origin of life revisited: from metabolites to cells].

Authors:
Antoine Danchin

Med Sci (Paris) 2018 11 10;34(11):984-989. Epub 2018 Dec 10.

Institut de cardiométabolisme et nutrition, Hôpital de la Pitié-Salpêtrière, 47 boulevard de l'Hôpital 75013 Paris.

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http://dx.doi.org/10.1051/medsci/2018234DOI Listing
November 2018

Conceptual sequel to biological expeditions at the time of global changes.

Authors:
Antoine Danchin

Environ Microbiol Rep 2019 02 4;11(1):38-40. Epub 2018 Dec 4.

Institute of Cardiometabolism and Nutrition, Hôpital de la Pitié-Salpêtrière, Paris, France.

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http://dx.doi.org/10.1111/1758-2229.12722DOI Listing
February 2019

[Revisiting the origins of life: from atoms to molecules, reproduction, then replication].

Authors:
Antoine Danchin

Med Sci (Paris) 2018 10 19;34(10):857-864. Epub 2018 Nov 19.

Institut de Cardiométabolisme et Nutrition, Hôpital de la Pitié-Salpêtrière, 47, boulevard de l'Hôpital 75013 Paris, France.

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http://dx.doi.org/10.1051/medsci/2018212DOI Listing
October 2018

Revisiting the methionine salvage pathway and its paralogues.

Microb Biotechnol 2019 01 10;12(1):77-97. Epub 2018 Oct 10.

Institute of Cardiometabolism and Nutrition, Hôpital de la Pitié-Salpêtrière, Paris, France.

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http://dx.doi.org/10.1111/1751-7915.13324DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6302742PMC
January 2019

No wisdom in the crowd: genome annotation in the era of big data - current status and future prospects.

Microb Biotechnol 2018 07 28;11(4):588-605. Epub 2018 May 28.

Integromics, Institute of Cardiometabolism and Nutrition, Hôpital de la Pitié-Salpêtrière, 47 Boulevard de l'Hôpital, 75013, Paris, France.

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http://dx.doi.org/10.1111/1751-7915.13284DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6011933PMC
July 2018

Bacteria in the ageing gut: did the taming of fire promote a long human lifespan?

Authors:
Antoine Danchin

Environ Microbiol 2018 06 2;20(6):1966-1987. Epub 2018 Jul 2.

Integromics, Institute of Cardiometabolism and Nutrition, Hôpital de la Pitié-Salpêtrière, 47 Boulevard de l'Hôpital, Paris, 75013, France.

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http://dx.doi.org/10.1111/1462-2920.14255DOI Listing
June 2018

Unique tRNA gene profile suggests paucity of nucleotide modifications in anticodons of a deep-sea symbiotic Spiroplasma.

Nucleic Acids Res 2018 03;46(5):2197-2203

Institute of Cardiometabolism and Nutrition, Hôpital de la Pitié-Salpêtrière, 47 boulevard de l'Hôpital, 75013 Paris, France.

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http://dx.doi.org/10.1093/nar/gky045DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5861454PMC
March 2018

Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement.

Microb Biotechnol 2018 01;11(1):3-17

CEA DRF Genoscope LABGeM, CNRS, UMR8030 Génomique Métabolique, Université d'Evry Val d'Essonne, Université Paris-Saclay, F-91057, Evry, France.

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http://dx.doi.org/10.1111/1751-7915.13043DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5743806PMC
January 2018

The Enigmatic Genome of an Obligate Ancient Spiroplasma Symbiont in a Hadal Holothurian.

Appl Environ Microbiol 2018 Jan 15;84(1). Epub 2017 Dec 15.

Institute of Deep-Sea Science and Engineering, Chinese Academy of Sciences, Sanya, Hainan, China

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http://dx.doi.org/10.1128/AEM.01965-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5734040PMC
January 2018

The contribution of microbial biotechnology to economic growth and employment creation.

Microb Biotechnol 2017 09 4;10(5):1137-1144. Epub 2017 Sep 4.

Student MSc Health Policy, Department of Surgery and Cancer, Imperial College London, UK.

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http://dx.doi.org/10.1111/1751-7915.12845DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5609265PMC
September 2017

From chemical metabolism to life: the origin of the genetic coding process.

Authors:
Antoine Danchin

Beilstein J Org Chem 2017 12;13:1119-1135. Epub 2017 Jun 12.

Institute of Cardiometabolism and Nutrition, Hôpital de la Pitié-Salpêtrière, 47 Boulevard de l'Hôpital, 75013, Paris, France.

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http://dx.doi.org/10.3762/bjoc.13.111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5480338PMC
June 2017

Coenzyme B12 synthesis as a baseline to study metabolite contribution of animal microbiota.

Microb Biotechnol 2017 07 14;10(4):688-701. Epub 2017 Jun 14.

AMAbiotics SAS, 47 rue de Montmorency, 75003, Paris, France.

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http://dx.doi.org/10.1111/1751-7915.12722DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5481537PMC
July 2017

Generation of mutation hotspots in ageing bacterial colonies.

Sci Rep 2016 Dec 5;6(1). Epub 2016 Dec 5.

Institute of Cardiometabolism and Nutrition, CHU Pitié-Salpêtrière, 47, Boulevard de l'Hôpital, 75013, Paris, France.

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http://dx.doi.org/10.1038/s41598-016-0005-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5431349PMC
December 2016

Coping with inevitable accidents in metabolism.

Authors:
Antoine Danchin

Microb Biotechnol 2017 01 29;10(1):57-72. Epub 2016 Dec 29.

Institute of Cardiometabolism and Nutrition, Hôpital de la Pitié-Salpêtrière, 47 Boulevard de l'Hôpital, Paris, 75013, France.

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http://dx.doi.org/10.1111/1751-7915.12461DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5270733PMC
January 2017

Unknown unknowns: essential genes in quest for function.

Microb Biotechnol 2016 09 20;9(5):530-40. Epub 2016 Jul 20.

Department of Biology, New York University Shanghai Campus, 1555 Century Avenue, Pudong New Area, Shanghai, 200122, China.

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http://dx.doi.org/10.1111/1751-7915.12384DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4993169PMC
September 2016

Genomic characterization of symbiotic mycoplasmas from the stomach of deep-sea isopod bathynomus sp.

Environ Microbiol 2016 09 5;18(8):2646-59. Epub 2016 Aug 5.

Institute of Deep-Sea Science and Engineering, Chinese Academy of Sciences, Sanya, Hainan, China.

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http://dx.doi.org/10.1111/1462-2920.13411DOI Listing
September 2016

Nature or manufacture: What should we fear most?

Authors:
Antoine Danchin

C R Biol 2016 Jul-Aug;339(7-8):329-35. Epub 2016 May 31.

Institute of Cardiometabolism and Nutrition (ICAN), hôpital de la Pitié-Salpêtrière, 47, boulevard de l'Hôpital, 75013 Paris, France. Electronic address:

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http://dx.doi.org/10.1016/j.crvi.2016.05.001DOI Listing
February 2017

From dirt to industrial applications: Pseudomonas putida as a Synthetic Biology chassis for hosting harsh biochemical reactions.

Curr Opin Chem Biol 2016 10 27;34:20-29. Epub 2016 May 27.

Systems and Synthetic Biology Program, Centro Nacional de Biotecnología (CNB-CSIC), 28049 Madrid, Spain. Electronic address:

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http://dx.doi.org/10.1016/j.cbpa.2016.05.011DOI Listing
October 2016

Reminder to deposit DNA sequences.

Science 2016 May 11;352(6287):780. Epub 2016 May 11.

Department of Ecology and Evolution, University of Chicago, Chicago, IL 60637, USA. Beijing Institute of Genomics, Beijing, 100101, China.

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http://dx.doi.org/10.1126/science.aaf7672DOI Listing
May 2016

From function to structure take the archaeal TRAM.

Authors:
Antoine Danchin

Environ Microbiol 2016 09 28;18(9):2776-8. Epub 2016 Apr 28.

Institute of Cardiometabolism and Nutrition, Hôpital de la Pitié-Salpêtrière, 47 Boulevard de l'Hôpital, 75013, Paris, France.

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http://dx.doi.org/10.1111/1462-2920.13300DOI Listing
September 2016

The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis.

Environ Microbiol 2016 10 28;18(10):3403-3424. Epub 2016 Apr 28.

Alternative Energies and Atomic Energy Commission (CEA), Genomic Institute & CNRS-UMR8030 & Evry University, Laboratory of Bioinformatics Analysis in Genomics and Metabolism, 2 rue Gaston Crémieux, 91057, Evry, France.

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http://dx.doi.org/10.1111/1462-2920.13230DOI Listing
October 2016

Confidence, tolerance, and allowance in biological engineering: the nuts and bolts of living things.

Bioessays 2015 Jan 27;37(1):95-102. Epub 2014 Oct 27.

Cavanilles Institute of Biodiversity and Evolutionary Biology, University of Valencia, Valencia, Spain; Fundació General, University of Valencia, Valencia, Spain.

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http://dx.doi.org/10.1002/bies.201400091DOI Listing
January 2015

Chemical reactivity drives spatiotemporal organisation of bacterial metabolism.

FEMS Microbiol Rev 2015 Jan 4;39(1):96-119. Epub 2014 Dec 4.

AMAbiotics SAS, Institut du Cerveau et de la Moëlle Épinière, Hôpital de la Pitié-Salpêtrière, Paris, France.

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http://femsre.oxfordjournals.org/content/femsre/39/1/96.full
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http://femsre.oxfordjournals.org/cgi/doi/10.1111/1574-6976.1
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http://dx.doi.org/10.1111/1574-6976.12089DOI Listing
January 2015

The logic of metabolism and its fuzzy consequences.

Environ Microbiol 2014 Jan 6;16(1):19-28. Epub 2013 Oct 6.

Building G1, AMAbiotics SAS, 2 rue Gaston Crémieux, Evry, 91000, France.

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http://dx.doi.org/10.1111/1462-2920.12270DOI Listing
January 2014

Paralogous metabolism: S-alkyl-cysteine degradation in Bacillus subtilis.

Environ Microbiol 2014 Jan 15;16(1):101-17. Epub 2013 Aug 15.

Department of Microbiology, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Pokfulam Road, Hong Kong.

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http://dx.doi.org/10.1111/1462-2920.12210DOI Listing
January 2014

An updated metabolic view of the Bacillus subtilis 168 genome.

Microbiology (Reading) 2013 Apr 21;159(Pt 4):757-770. Epub 2013 Feb 21.

Department of Biochemistry, Li KaShing Faculty of Medicine, The University of Hong Kong, 21, Sassoon Road, Hong Kong SAR, China.

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http://dx.doi.org/10.1099/mic.0.064691-0DOI Listing
April 2013

From essential to persistent genes: a functional approach to constructing synthetic life.

Trends Genet 2013 May 6;29(5):273-9. Epub 2012 Dec 6.

Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany.

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http://dx.doi.org/10.1016/j.tig.2012.11.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3642372PMC
May 2013

Linking selenium biogeochemistry to the sulfur-dependent biological detoxification of arsenic.

Environ Microbiol 2012 Jul 20;14(7):1612-23. Epub 2012 Apr 20.

Ecohydrology, Department of Earth and Environmental Sciences, University of Waterloo, 200 University Ave W, Waterloo, Canada.

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http://dx.doi.org/10.1111/j.1462-2920.2012.02758.xDOI Listing
July 2012

Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolC.

BMC Genomics 2012 Feb 14;13:69. Epub 2012 Feb 14.

AMAbiotics SAS, Bâtiment G1, 2 rue Gaston Crémieux, 91000 Evry, France.

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http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2164-13-69DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3814617PMC
February 2012

Identification of a novel nanoRNase in Bartonella.

Microbiology (Reading) 2012 Apr 19;158(Pt 4):886-895. Epub 2012 Jan 19.

Pasteur Institute, 25-28 Rue du Dr Roux, 75015 Paris, France.

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http://dx.doi.org/10.1099/mic.0.054619-0DOI Listing
April 2012

3'-5' phosphoadenosine phosphate is an inhibitor of PARP-1 and a potential mediator of the lithium-dependent inhibition of PARP-1 in vivo.

Biochem J 2012 Apr;443(2):485-90

Institut Pasteur, CNRS UMR 3528, Unité de Biochimie des Interactions macromoléculaires, Département de Biologie Strucurale et Chimie, Paris, France.

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http://dx.doi.org/10.1042/BJ20111057DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3316155PMC
April 2012

Scaling up synthetic biology: Do not forget the chassis.

Authors:
Antoine Danchin

FEBS Lett 2012 Jul 2;586(15):2129-37. Epub 2012 Jan 2.

AMAbiotics SAS, Bâtiment G1, 2 rue Gaston Crémieux, 91057 Evry Cedex, France.

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http://dx.doi.org/10.1016/j.febslet.2011.12.024DOI Listing
July 2012

Synthetic biology's flywheel.

Authors:
Antoine Danchin

EMBO Rep 2012 Feb 1;13(2):92. Epub 2012 Feb 1.

AMAbiotics SAS, Evry, France.

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http://dx.doi.org/10.1038/embor.2011.253DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3271340PMC
February 2012

Bacterial niche-specific genome expansion is coupled with highly frequent gene disruptions in deep-sea sediments.

PLoS One 2011 21;6(12):e29149. Epub 2011 Dec 21.

KAUST Global Collaborative Research, Division of Life Sciences, Hong Kong, University of Science and Technology, Clear Water Bay, Hong Kong, China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0029149PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3244439PMC
May 2012

Characterization of NrnA homologs from Mycobacterium tuberculosis and Mycoplasma pneumoniae.

RNA 2012 Jan 23;18(1):155-65. Epub 2011 Nov 23.

Unitéde Génétique des Génomes Bactériens, Institut Pasteur, CNRS URA 2171, 75724 Paris Cedex 15, France.

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http://dx.doi.org/10.1261/rna.029132.111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3261737PMC
January 2012

Life's demons: information and order in biology. What subcellular machines gather and process the information necessary to sustain life?

EMBO Rep 2011 Jun 6;12(6):495-9. Epub 2011 May 6.

Department of Physics and Astronomy, University of Hawaii, Hilo, USA.

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http://dx.doi.org/10.1038/embor.2011.83DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3128285PMC
June 2011

Hydrothermally generated aromatic compounds are consumed by bacteria colonizing in Atlantis II Deep of the Red Sea.

ISME J 2011 Oct 28;5(10):1652-9. Epub 2011 Apr 28.

KAUST Global Collaborative Research, Division of Life Science, Hong Kong University of Science and Technology, Hong Kong, China.

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http://dx.doi.org/10.1038/ismej.2011.42DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3176515PMC
October 2011

Life in the cold: a proteomic study of cold-repressed proteins in the antarctic bacterium pseudoalteromonas haloplanktis TAC125.

Appl Environ Microbiol 2011 Jun 8;77(11):3881-3. Epub 2011 Apr 8.

Laboratory of Biochemistry, Institute of Chemistry B6a, B-4000 Liège-Sart Tilman, Belgium.

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http://dx.doi.org/10.1128/AEM.02757-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3127592PMC
June 2011

Antifragility and Tinkering in Biology (and in Business) Flexibility Provides an Efficient Epigenetic Way to Manage Risk.

Genes (Basel) 2011 Nov 29;2(4):998-1016. Epub 2011 Nov 29.

Fondation Fourmentin-Guilbert, 2 avenue du Pavé Neuf, 93160 Noisy-le-Grand, France.

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http://dx.doi.org/10.3390/genes2040998DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3927596PMC
November 2011

Decrypting the H-NS-dependent regulatory cascade of acid stress resistance in Escherichia coli.

BMC Microbiol 2010 Oct 29;10:273. Epub 2010 Oct 29.

Unité de Plasticité du Génome Bactérien, Institut Pasteur, France.

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http://dx.doi.org/10.1186/1471-2180-10-273DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2984483PMC
October 2010

A path from predation to mutualism.

Authors:
Antoine Danchin

Mol Microbiol 2010 Sep;77(6):1346-50

AMAbiotics SAS, Genavenir 8, 5 rue Henri Desbruères, 91030 Evry Cedex, France.

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http://dx.doi.org/10.1111/j.1365-2958.2010.07341.xDOI Listing
September 2010

Motivated research.

Authors:
Antoine Danchin

EMBO Rep 2010 Jul;11(7):488

AMAbiotics SAS, Evry, France.

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http://dx.doi.org/10.1038/embor.2010.85DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2897119PMC
July 2010

RcsB plays a central role in H-NS-dependent regulation of motility and acid stress resistance in Escherichia coli.

Res Microbiol 2010 Jun 14;161(5):363-71. Epub 2010 May 14.

Institut Pasteur, Unité de Génétique des Génomes Bactériens, CNRS URA2171, 28 Rue du Docteur Roux, 75724 Paris Cedex 15, France.

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http://dx.doi.org/10.1016/j.resmic.2010.04.002DOI Listing
June 2010

Perfect time or perfect crime?

Authors:
Antoine Danchin

EMBO Rep 2010 Feb;11(2):74

CEA/Genoscope, Evry, France.

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http://dx.doi.org/10.1038/embor.2009.275DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2828755PMC
February 2010

A challenge to vaccinology: living organisms trap information.

Authors:
Antoine Danchin

Vaccine 2009 Dec;27 Suppl 6:G13-6

CEA/Genoscope, Amabiotics, 2, rue Gaston Crémieux, 91057 Evry Cedex, France.

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http://dx.doi.org/10.1016/j.vaccine.2009.10.071DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7115390PMC
December 2009

Information of the chassis and information of the program in synthetic cells.

Authors:
Antoine Danchin

Syst Synth Biol 2009 Dec 10;3(1-4):125-34. Epub 2009 Oct 10.

CNRS URA2171/Institut Pasteur, 28 rue du Docteur Roux, Paris Cedex 15, 75724, France,

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http://dx.doi.org/10.1007/s11693-009-9036-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2759428PMC
December 2009

PssA is required for alpha-amylase secretion in Antarctic Pseudoalteromonas haloplanktis.

Microbiology (Reading) 2010 Jan 24;156(Pt 1):211-9. Epub 2009 Sep 24.

Dipartimento di Chimica Organica e Biochimica, Università di Napoli Federico II - Complesso Universitario M.S. Angelo via Cinthia 4, 80126 Napoli, Italy.

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http://dx.doi.org/10.1099/mic.0.032342-0DOI Listing
January 2010

Use of a riboswitch-controlled conditional hypomorphic mutation to uncover a role for the essential csrA gene in bacterial autoaggregation.

J Biol Chem 2009 Oct 25;284(42):28738-45. Epub 2009 Aug 25.

Department of Biochemistry, Li Ka Shing Faculty of Medicine, University of Hong Kong, Pok Fu Lam, Hong Kong, China.

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http://dx.doi.org/10.1074/jbc.M109.028076DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2781419PMC
October 2009

Myopic selection of novel information drives evolution.

Authors:
Antoine Danchin

Curr Opin Biotechnol 2009 Aug 21;20(4):504-8. Epub 2009 Aug 21.

CNRS URA2171, 28 rue du Docteur Roux, 75724 Paris Cedex 15, France.

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http://dx.doi.org/10.1016/j.copbio.2009.07.004DOI Listing
August 2009

Degradation of nanoRNA is performed by multiple redundant RNases in Bacillus subtilis.

Nucleic Acids Res 2009 Aug 24;37(15):5114-25. Epub 2009 Jun 24.

Institut Pasteur, URA 2171, Unité de Génétique des Génomes Bactériens, 75724 Paris Cedex 15, France.

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http://dx.doi.org/10.1093/nar/gkp527DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2731908PMC
August 2009

Cells need safety valves.

Authors:
Antoine Danchin

Bioessays 2009 Jul;31(7):769-73

Genetics of Bacterial Genomes, Centre National de la Recherche Scientifique URA 2171, Institut Pasteur, 28 rue du Docteur Roux, Paris Cedex 15, France.

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http://dx.doi.org/10.1002/bies.200900024DOI Listing
July 2009

Nature, artifice and emerging diseases.

Authors:
Antoine Danchin

EMBO Rep 2009 May;10(5):418-9

Institut Pasteur, Paris, France.

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http://dx.doi.org/10.1038/embor.2009.85DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2680892PMC
May 2009

From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later.

Microbiology (Reading) 2009 Jun 21;155(Pt 6):1758-1775. Epub 2009 Apr 21.

Institut Pasteur, Génétique des Génomes Bactériens/CNRS URA2171, 28 rue du Docteur Roux, 75724 Paris Cedex 15, France.

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http://dx.doi.org/10.1099/mic.0.027839-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2885750PMC
June 2009

Small noncoding RNA GcvB is a novel regulator of acid resistance in Escherichia coli.

BMC Genomics 2009 Apr 20;10:165. Epub 2009 Apr 20.

Department of Biochemistry, Li Ka Shing Faculty of Medicine, University of Hong Kong, Pok Fu Lam, Hong Kong SAR, PR China.

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http://dx.doi.org/10.1186/1471-2164-10-165DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2676305PMC
April 2009

A phylogenetic view of bacterial ribonucleases.

Authors:
Antoine Danchin

Prog Mol Biol Transl Sci 2009 ;85:1-41

Institut Pasteur, Docteur Roux, Paris Cedex 15, France.

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http://dx.doi.org/10.1016/S0079-6603(08)00801-5DOI Listing
April 2009

Bacteria as computers making computers.

Authors:
Antoine Danchin

FEMS Microbiol Rev 2009 Jan 7;33(1):3-26. Epub 2008 Nov 7.

Génétique des Génomes Bactériens, Institut Pasteur, Paris, France.

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http://dx.doi.org/10.1111/j.1574-6976.2008.00137.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2704931PMC
January 2009

The CymR regulator in complex with the enzyme CysK controls cysteine metabolism in Bacillus subtilis.

J Biol Chem 2008 Dec 29;283(51):35551-60. Epub 2008 Oct 29.

Institut Pasteur, UnitédeGénétique des Génomes Bactériens, Plate-forme de Biophysique des Macromolécules et de leurs Interactions, 75724 Paris cedex 15, France.

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http://dx.doi.org/10.1074/jbc.M805951200DOI Listing
December 2008

S-box and T-box riboswitches and antisense RNA control a sulfur metabolic operon of Clostridium acetobutylicum.

Nucleic Acids Res 2008 Oct 23;36(18):5955-69. Epub 2008 Sep 23.

Genetics of Bacterial Genomes, Pasteur Institute, CNRS URA2171, 25 rue du Dr Roux, 75724 Paris Cedex 15, France.

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http://dx.doi.org/10.1093/nar/gkn601DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2566862PMC
October 2008

Synthetic biology: discovering new worlds and new words.

EMBO Rep 2008 Sep;9(9):822-7

National Centre of Biotechnology-Spanish Council for Scientific Research, Campus de Cantoblanco, Madrid, Spain.

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http://dx.doi.org/10.1038/embor.2008.159DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2529360PMC
September 2008

Natural selection and immortality.

Authors:
Antoine Danchin

Biogerontology 2009 Aug 22;10(4):503-16. Epub 2008 Aug 22.

Genetics of Bacterial Genomes, CNRS URA2171, Institut Pasteur, Paris, France.

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http://dx.doi.org/10.1007/s10522-008-9171-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2700247PMC
August 2009

Spx mediates oxidative stress regulation of the methionine sulfoxide reductases operon in Bacillus subtilis.

BMC Microbiol 2008 Jul 28;8:128. Epub 2008 Jul 28.

Institut Pasteur, Unité de Génétique des Génomes Bactériens, 28 rue du Docteur Roux, 75724 Paris Cedex 15, France.

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http://dx.doi.org/10.1186/1471-2180-8-128DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2518928PMC
July 2008

[Will we build a synthetic bacteria?].

Authors:
Antoine Danchin

Med Sci (Paris) 2008 May;24(5):533-40

Génétique des Génomes Bactériens, URA 2171 CNRS, Institut Pasteur, 25, rue du Docteur Roux, 75724 Paris Cedex 15, France.

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http://dx.doi.org/10.1051/medsci/2008245533DOI Listing
May 2008

Genomics of an extreme psychrophile, Psychromonas ingrahamii.

BMC Genomics 2008 May 6;9:210. Epub 2008 May 6.

Bay Paul Center, Marine Biological Laboratory, Woods Hole, MA 02543, USA.

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http://dx.doi.org/10.1186/1471-2164-9-210DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2405808PMC
May 2008

A variable gene in a conserved region of the Helicobacter pylori genome: isotopic gene replacement or rapid evolution?

DNA Res 2008 Jun 27;15(3):163-8. Epub 2008 Apr 27.

INSERM U853, Laboratoire de Bactériologie, Université Victor Segalen Bordeaux 2, 146 rue Léo Saignat, F-33076 Bordeaux cedex, France.

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http://dx.doi.org/10.1093/dnares/dsn006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2650637PMC
June 2008

RuBisCO-like proteins as the enolase enzyme in the methionine salvage pathway: functional and evolutionary relationships between RuBisCO-like proteins and photosynthetic RuBisCO.

J Exp Bot 2008 9;59(7):1543-54. Epub 2008 Apr 9.

Nara Institute of Science and Technology, Graduate School of Biological Sciences, 8916-5 Takayama, Ikoma, Nara, 630-0101 Japan.

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http://dx.doi.org/10.1093/jxb/ern104DOI Listing
October 2008

Regulatory role of UvrY in adaptation of Photorhabdus luminescens growth inside the insect.

Environ Microbiol 2008 May 31;10(5):1118-34. Epub 2008 Jan 31.

Unite de Genetique des Genomes Bacteriens (URA2171), Institut Pasteur, 28 rue du Docteur Roux, 75724 Paris Cedex 15, France.

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http://dx.doi.org/10.1111/j.1462-2920.2007.01528.xDOI Listing
May 2008

Cinnamic acid, an autoinducer of its own biosynthesis, is processed via Hca enzymes in Photorhabdus luminescens.

Appl Environ Microbiol 2008 Mar 1;74(6):1717-25. Epub 2008 Feb 1.

Unité de Génétique des Membranes Bactériennes, CNRS URA 2172, Institut Pasteur, 25 Rue du Dr Roux, 75724 Paris Cedex 15, France.

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http://dx.doi.org/10.1128/AEM.02589-07DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2268303PMC
March 2008