Anthony T Papenfuss

Anthony T Papenfuss

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Anthony T Papenfuss

Publications by authors named "Anthony T Papenfuss"

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Tentacle Transcriptomes of the Speckled Anemone (Actiniaria: Actiniidae: Oulactis sp.): Venom-Related Components and Their Domain Structure.

Mar Biotechnol (NY) 2020 Jan 24. Epub 2020 Jan 24.

Medicinal Chemistry, Monash Institute of Pharmaceutical Sciences, Monash University, 381 Royal Parade, Parkville, Victoria, 3052, Australia.

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http://dx.doi.org/10.1007/s10126-020-09945-8DOI Listing
January 2020

MaveDB: an open-source platform to distribute and interpret data from multiplexed assays of variant effect.

Genome Biol 2019 11 4;20(1):223. Epub 2019 Nov 4.

Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.

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http://dx.doi.org/10.1186/s13059-019-1845-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6827219PMC
November 2019

Evolution of cnidarian trans-defensins: Sequence, structure and exploration of chemical space.

Proteins 2019 07 18;87(7):551-560. Epub 2019 Mar 18.

Medicinal Chemistry, Monash Institute of Pharmaceutical Sciences, Monash University, Melbourne, Victoria, Australia.

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http://dx.doi.org/10.1002/prot.25679DOI Listing
July 2019

Comprehensive evaluation and characterisation of short read general-purpose structural variant calling software.

Nat Commun 2019 07 19;10(1):3240. Epub 2019 Jul 19.

Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research, 1G Royal Pde, Parkville, VIC, 3052, Australia.

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http://dx.doi.org/10.1038/s41467-019-11146-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6642177PMC
July 2019

Tasmanian devils with contagious cancer exhibit a constricted T-cell repertoire diversity.

Commun Biol 2019 13;2:99. Epub 2019 Mar 13.

School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW, 2006, Australia.

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http://dx.doi.org/10.1038/s42003-019-0342-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6416256PMC
March 2019

Somatic mutations in early metazoan genes disrupt regulatory links between unicellular and multicellular genes in cancer.

Elife 2019 02 26;8. Epub 2019 Feb 26.

Computational Cancer Biology Program, Peter MacCallum Cancer Centre, Melbourne, Australia.

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http://dx.doi.org/10.7554/eLife.40947DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6402835PMC
February 2019

The Scalloped and Nerfin-1 Transcription Factors Cooperate to Maintain Neuronal Cell Fate.

Cell Rep 2018 11;25(6):1561-1576.e7

Peter MacCallum Cancer Centre, 305 Grattan Street, Melbourne, VIC 3000, Australia; Sir Peter MacCallum Department of Oncology, University of Melbourne, Parkville, VIC 3010, Australia; Department of Anatomy and Developmental Biology, and Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia; Department of Pathology, University of Melbourne, Parkville, VIC 3010, Australia. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S22111247183161
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http://dx.doi.org/10.1016/j.celrep.2018.10.038DOI Listing
November 2018

DNA repair processes are critical mediators of p53-dependent tumor suppression.

Nat Med 2018 07 11;24(7):947-953. Epub 2018 Jun 11.

Molecular Genetics of Cancer Division, The Walter and Eliza Hall Institute of Medical Research, Melbourne, Victoria, Australia.

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http://dx.doi.org/10.1038/s41591-018-0043-5DOI Listing
July 2018

Optical mapping reveals a higher level of genomic architecture of chained fusions in cancer.

Genome Res 2018 05 4;28(5):726-738. Epub 2018 Apr 4.

Genomics and Epigenetics Division, Garvan Institute of Medical Research, New South Wales 2010, Australia.

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http://dx.doi.org/10.1101/gr.227975.117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5932612PMC
May 2018

Phylogenetic relationships, stage-specific expression and localisation of a unique family of inactive cysteine proteases in Sarcoptes scabiei.

Parasit Vectors 2018 05 16;11(1):301. Epub 2018 May 16.

QIMR Berghofer Medical Research Institute, Infectious Diseases Program, 300 Herston Road, Herston, Brisbane, QLD, 4006, Australia.

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http://dx.doi.org/10.1186/s13071-018-2862-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5956821PMC
May 2018

Correction to: A statistical framework for analyzing deep mutational scanning data.

Genome Biol 2018 02 7;19(1):17. Epub 2018 Feb 7.

Department of Genome Sciences, University of Washington, Seattle, USA.

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http://dx.doi.org/10.1186/s13059-018-1391-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5803959PMC
February 2018

How the evolution of multicellularity set the stage for cancer.

Br J Cancer 2018 01 16;118(2):145-152. Epub 2018 Jan 16.

Computational Cancer Biology Program, Peter MacCallum Cancer Centre, Melbourne, VIC 3000, Australia.

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http://dx.doi.org/10.1038/bjc.2017.398DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5785747PMC
January 2018

GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly.

Genome Res 2017 12 2;27(12):2050-2060. Epub 2017 Nov 2.

Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, 3052, Australia.

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http://dx.doi.org/10.1101/gr.222109.117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5741059PMC
December 2017

Canary: an atomic pipeline for clinical amplicon assays.

BMC Bioinformatics 2017 Dec 15;18(1):555. Epub 2017 Dec 15.

Department of Pathology, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia.

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http://dx.doi.org/10.1186/s12859-017-1950-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5732437PMC
December 2017

A statistical framework for analyzing deep mutational scanning data.

Genome Biol 2017 Aug 7;18(1):150. Epub 2017 Aug 7.

Department of Genome Sciences, University of Washington, Seattle, WA, 98195, USA.

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http://dx.doi.org/10.1186/s13059-017-1272-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5547491PMC
August 2017

Corrigendum: Whole genome analysis of a schistosomiasis-transmitting freshwater snail.

Authors:
Coen M Adema LaDeana W Hillier Catherine S Jones Eric S Loker Matty Knight Patrick Minx Guilherme Oliveira Nithya Raghavan Andrew Shedlock Laurence Rodrigues do Amaral Halime D Arican-Goktas Juliana G Assis Elio Hideo Baba Olga L Baron Christopher J Bayne Utibe Bickham-Wright Kyle K Biggar Michael Blouin Bryony C Bonning Chris Botka Joanna M Bridger Katherine M Buckley Sarah K Buddenborg Roberta Lima Caldeira Julia Carleton Omar S Carvalho Maria G Castillo Iain W Chalmers Mikkel Christensens Sandra Clifton Celine Cosseau Christine Coustau Richard M Cripps Yesid Cuesta-Astroz Scott F Cummins Leon Di Stefano Nathalie Dinguirard David Duval Scott Emrich Cédric Feschotte Rene Feyereisen Peter FitzGerald Catrina Fronick Lucinda Fulton Richard Galinier Sandra G Gava Michael Geusz Kathrin K Geyer Gloria I Giraldo-Calderón Matheus de Souza Gomes Michelle A Gordy Benjamin Gourbal Christoph Grunau Patrick C Hanington Karl F Hoffmann Daniel Hughes Judith Humphries Daniel J Jackson Liana K Jannotti-Passos Wander de Jesus Jeremias Susan Jobling Bishoy Kamel Aurélie Kapusta Satwant Kaur Joris M Koene Andrea B Kohn Dan Lawson Scott P Lawton Di Liang Yanin Limpanont Sijun Liu Anne E Lockyer Ty Anna L Lovato Fernanda Ludolf Vince Magrini Donald P McManus Monica Medina Milind Misra Guillaume Mitta Gerald M Mkoji Michael J Montague Cesar Montelongo Leonid L Moroz Monica C Munoz-Torres Umar Niazi Leslie R Noble Francislon S Oliveira Fabiano S Pais Anthony T Papenfuss Rob Peace Janeth J Pena Emmanuel A Pila Titouan Quelais Brian J Raney Jonathan P Rast David Rollinson Izinara C Rosse Bronwyn Rotgans Edwin J Routledge Kathryn M Ryan Larissa L S Scholte Kenneth B Storey Martin Swain Jacob A Tennessen Chad Tomlinson Damian L Trujillo Emanuela V Volpi Anthony J Walker Tianfang Wang Ittiprasert Wannaporn Wesley C Warren Xiao-Jun Wu Timothy P Yoshino Mohammed Yusuf Si-Ming Zhang Min Zhao Richard K Wilson

Nat Commun 2017 08 23;8:16153. Epub 2017 Aug 23.

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http://dx.doi.org/10.1038/ncomms16153DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5569240PMC
August 2017

CLOVE: classification of genomic fusions into structural variation events.

BMC Bioinformatics 2017 Jul 20;18(1):346. Epub 2017 Jul 20.

Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Parkville, VIC, 3052, Australia.

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http://dx.doi.org/10.1186/s12859-017-1760-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5520322PMC
July 2017

Altered interactions between unicellular and multicellular genes drive hallmarks of transformation in a diverse range of solid tumors.

Proc Natl Acad Sci U S A 2017 06 8;114(24):6406-6411. Epub 2017 May 8.

Computational Cancer Biology Program, Peter MacCallum Cancer Centre, Melbourne, VIC 3000, Australia;

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http://dx.doi.org/10.1073/pnas.1617743114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5474804PMC
June 2017

Whole genome analysis of a schistosomiasis-transmitting freshwater snail.

Authors:
Coen M Adema LaDeana W Hillier Catherine S Jones Eric S Loker Matty Knight Patrick Minx Guilherme Oliveira Nithya Raghavan Andrew Shedlock Laurence Rodrigues do Amaral Halime D Arican-Goktas Juliana G Assis Elio Hideo Baba Olga L Baron Christopher J Bayne Utibe Bickham-Wright Kyle K Biggar Michael Blouin Bryony C Bonning Chris Botka Joanna M Bridger Katherine M Buckley Sarah K Buddenborg Roberta Lima Caldeira Julia Carleton Omar S Carvalho Maria G Castillo Iain W Chalmers Mikkel Christensens Sandra Clifton Celine Cosseau Christine Coustau Richard M Cripps Yesid Cuesta-Astroz Scott F Cummins Leon di Stephano Nathalie Dinguirard David Duval Scott Emrich Cédric Feschotte Rene Feyereisen Peter FitzGerald Catrina Fronick Lucinda Fulton Richard Galinier Sandra G Gava Michael Geusz Kathrin K Geyer Gloria I Giraldo-Calderón Matheus de Souza Gomes Michelle A Gordy Benjamin Gourbal Christoph Grunau Patrick C Hanington Karl F Hoffmann Daniel Hughes Judith Humphries Daniel J Jackson Liana K Jannotti-Passos Wander de Jesus Jeremias Susan Jobling Bishoy Kamel Aurélie Kapusta Satwant Kaur Joris M Koene Andrea B Kohn Dan Lawson Scott P Lawton Di Liang Yanin Limpanont Sijun Liu Anne E Lockyer TyAnna L Lovato Fernanda Ludolf Vince Magrini Donald P McManus Monica Medina Milind Misra Guillaume Mitta Gerald M Mkoji Michael J Montague Cesar Montelongo Leonid L Moroz Monica C Munoz-Torres Umar Niazi Leslie R Noble Francislon S Oliveira Fabiano S Pais Anthony T Papenfuss Rob Peace Janeth J Pena Emmanuel A Pila Titouan Quelais Brian J Raney Jonathan P Rast David Rollinson Izinara C Rosse Bronwyn Rotgans Edwin J Routledge Kathryn M Ryan Larissa L S Scholte Kenneth B Storey Martin Swain Jacob A Tennessen Chad Tomlinson Damian L Trujillo Emanuela V Volpi Anthony J Walker Tianfang Wang Ittiprasert Wannaporn Wesley C Warren Xiao-Jun Wu Timothy P Yoshino Mohammed Yusuf Si-Ming Zhang Min Zhao Richard K Wilson

Nat Commun 2017 05 16;8:15451. Epub 2017 May 16.

The McDonnell Genome Institute, Washington University, Saint Louis, Missouri 63108 USA.

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http://dx.doi.org/10.1038/ncomms15451DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5440852PMC
May 2017

Hormone-like peptides in the venoms of marine cone snails.

Gen Comp Endocrinol 2017 04 22;244:11-18. Epub 2015 Aug 22.

Department of Biology, University of Utah, Salt Lake City, UT 84112, USA; Department of Biology, Copenhagen Biocenter, Ole Maaløes Vej 5, DK-2200 Copenhagen, Denmark. Electronic address:

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http://dx.doi.org/10.1016/j.ygcen.2015.07.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4762756PMC
April 2017

Significant decline in anticancer immune capacity during puberty in the Tasmanian devil.

Sci Rep 2017 03 16;7:44716. Epub 2017 Mar 16.

School of Life and Environmental Sciences, The University of Sydney, New South Wales, 2006, Australia.

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http://dx.doi.org/10.1038/srep44716DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5353603PMC
March 2017

HYSYS: have you swapped your samples?

Bioinformatics 2017 02;33(4):596-598

Bioinformatics Division, The Walter & Eliza Hall Institute, Parkville 3052, Australia.

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http://dx.doi.org/10.1093/bioinformatics/btw685DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5408803PMC
February 2017

PD-L1 Is Not Constitutively Expressed on Tasmanian Devil Facial Tumor Cells but Is Strongly Upregulated in Response to IFN-γ and Can Be Expressed in the Tumor Microenvironment.

Front Immunol 2016 9;7:581. Epub 2016 Dec 9.

Experimental Therapeutics Laboratory, Hanson Institute, School of Pharmacy and Medical Science, University of South Australia, Adelaide, SA, Australia; Experimental Therapeutics Laboratory, Sansom Institute, School of Pharmacy and Medical Science, University of South Australia, Adelaide, SA, Australia; Discipline of Obstetrics and Gynaecology, School of Medicine, Robinson Research Institute, The University of Adelaide, Adelaide, SA, Australia.

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http://dx.doi.org/10.3389/fimmu.2016.00581DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5145852PMC
December 2016

The UT family of MHC class I loci unique to non-eutherian mammals has limited polymorphism and tissue specific patterns of expression in the opossum.

BMC Immunol 2016 11 8;17(1):43. Epub 2016 Nov 8.

Department of Biology, Center for Evolutionary and Theoretical Immunology, University of New Mexico, Albuquerque, NM, 87131, USA.

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http://dx.doi.org/10.1186/s12865-016-0181-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5101759PMC
November 2016

Elementary: breast cancer culprits leave their signatures on the double helix.

Cell Death Differ 2016 10 2;23(10):1577-8. Epub 2016 Sep 2.

Department of Medical Biology, The University of Melbourne, Parkville, Victoria 3010, Australia.

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http://dx.doi.org/10.1038/cdd.2016.82DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5041201PMC
October 2016

CD271 Expression on Patient Melanoma Cells Is Unstable and Unlinked to Tumorigenicity.

Cancer Res 2016 07 20;76(13):3965-77. Epub 2016 Jun 20.

Cancer Development and Treatment Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Australia. Sir Peter MacCallum Department of Pathology, University of Melbourne, Parkville, Australia. Sir Peter MacCallum Department of Oncology, University of Melbourne, Parkville, Australia. Department of Cancer Medicine, Peter MacCallum Cancer Centre, East Melbourne, Australia.

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http://dx.doi.org/10.1158/0008-5472.CAN-15-2377DOI Listing
July 2016

Transmissible cancers in an evolutionary context.

Bioessays 2016 07;38 Suppl 1:S14-23

Faculty of Veterinary Sciences, University of Sydney, Sydney, New South Wales, 2006, Australia.

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http://dx.doi.org/10.1002/bies.201670904DOI Listing
July 2016

Improving the Power of Structural Variation Detection by Augmenting the Reference.

PLoS One 2015 31;10(8):e0136771. Epub 2015 Aug 31.

Department of Biochemistry and Molecular Biology, The Pennsylvania State University, State College, United States of America; Genomic Sciences Institute of the Huck, The Pennsylvania State University, State College, United States of America; Department of Computer Science and Engineering, The Pennsylvania State University, State College, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0136771PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4556445PMC
June 2016

Expression of a Chimeric Antigen Receptor in Multiple Leukocyte Lineages in Transgenic Mice.

PLoS One 2015 27;10(10):e0140543. Epub 2015 Oct 27.

Sir Peter MacCallum Department of Oncology, University of Melbourne, Parkville, Victoria 3010, Australia; Department of Immunology, Monash University, Prahran Victoria 3181 Australia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0140543PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4624721PMC
June 2016

Genomic resources and draft assemblies of the human and porcine varieties of scabies mites, Sarcoptes scabiei var. hominis and var. suis.

Gigascience 2016 06 2;5(1):23. Epub 2016 Jun 2.

Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, 3052, Australia.

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http://dx.doi.org/10.1186/s13742-016-0129-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4890329PMC
June 2016

The life history of neochromosomes revealed.

Mol Cell Oncol 2015 Oct-Dec;2(4):e1000698. Epub 2015 Jan 23.

Peter MacCallum Cancer Centre; East Melbourne, Australia; The Kinghorn Cancer Centre, Garvan Institute of Medical Research; Sydney, Australia; University of New South Wales; Sydney, Australia.

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http://dx.doi.org/10.1080/23723556.2014.1000698DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4905327PMC
June 2016

Embryonic Lethality in Homozygous Human Her-2 Transgenic Mice Due to Disruption of the Pds5b Gene.

PLoS One 2015 3;10(9):e0136817. Epub 2015 Sep 3.

Cancer Immunology Research Program, Sir Peter MacCallum Department of Oncology, University of Melbourne, Parkville, Victoria, 3010, Australia; Department of Immunology, Monash University, Prahran Victoria, 3181, Australia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0136817PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4559457PMC
May 2016

A Naturally Occurring Peptide with an Elementary Single Disulfide-Directed β-Hairpin Fold.

Structure 2016 Feb 7;24(2):293-9. Epub 2016 Jan 7.

Medicinal Chemistry, Monash Institute of Pharmaceutical Sciences, Monash University, 381 Royal Parade, Parkville, VIC 3052, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.str.2015.11.015DOI Listing
February 2016

Mitochondrial Genome Sequence of the Scabies Mite Provides Insight into the Genetic Diversity of Individual Scabies Infections.

PLoS Negl Trop Dis 2016 Feb 12;10(2):e0004384. Epub 2016 Feb 12.

Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.

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http://dx.doi.org/10.1371/journal.pntd.0004384DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4752359PMC
February 2016

The Tasmanian devil microbiome-implications for conservation and management.

Microbiome 2015 Dec 21;3:76. Epub 2015 Dec 21.

Faculty of Veterinary Science, RMC Gunn Building, University of Sydney, Sydney, New South Wales, 2006, Australia.

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http://dx.doi.org/10.1186/s40168-015-0143-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4687321PMC
December 2015

Identification and analysis of divergent immune gene families within the Tasmanian devil genome.

BMC Genomics 2015 Nov 26;16:1017. Epub 2015 Nov 26.

Faculty of Veterinary Science, University of Sydney, Camperdown, NSW, Australia.

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http://dx.doi.org/10.1186/s12864-015-2206-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4662006PMC
November 2015

Clinical cancer genomic analysis: data engineering required.

Lancet Oncol 2015 Sep;16(9):1015-1017

Department of Pathology, Peter MacCallum Cancer Centre, 2 St Andrews Place, East Melbourne, VIC 3002, Australia; Sir Peter MacCallum Department of Oncology, University of Melbourne, Melbourne, VIC, Australia; Department of Pathology, University of Melbourne, Melbourne, VIC, Australia.

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http://dx.doi.org/10.1016/S1470-2045(15)00195-3DOI Listing
September 2015

Marsupials and monotremes possess a novel family of MHC class I genes that is lost from the eutherian lineage.

BMC Genomics 2015 Jul 22;16:535. Epub 2015 Jul 22.

Center for Evolutionary and Theoretical Immunology, Department of Biology, University of New Mexico, Albuquerque, NM, 87131-0001, USA.

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http://dx.doi.org/10.1186/s12864-015-1745-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4509613PMC
July 2015

Inositol polyphosphate 4-phosphatase II (INPP4B) is associated with chemoresistance and poor outcome in AML.

Blood 2015 Apr 3;125(18):2815-24. Epub 2015 Mar 3.

Australian Centre for Blood Diseases, Monash University, Melbourne, VIC, Australia; Department of Clinical Haematology, The Alfred Hospital, Melbourne, VIC, Australia;

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http://dx.doi.org/10.1182/blood-2014-09-603555DOI Listing
April 2015

Discovery by proteogenomics and characterization of an RF-amide neuropeptide from cone snail venom.

J Proteomics 2015 Jan 15;114:38-47. Epub 2014 Nov 15.

Medicinal Chemistry, Monash Institute of Pharmaceutical Sciences, Monash University, 381 Royal Parade, Parkville 3052, Australia.

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http://dx.doi.org/10.1016/j.jprot.2014.11.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4366139PMC
January 2015

The transcription factor Nerfin-1 prevents reversion of neurons into neural stem cells.

Genes Dev 2015 Jan;29(2):129-43

Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Australia; Sir Peter MacCallum Department of Oncology, University of Melbourne, Parkville, Victoria 3010, Australia;

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http://dx.doi.org/10.1101/gad.250282.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4298133PMC
January 2015

Diversity of conotoxin gene superfamilies in the venomous snail, Conus victoriae.

PLoS One 2014 5;9(2):e87648. Epub 2014 Feb 5.

Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Melbourne, VIC, Australia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0087648PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3914837PMC
November 2014

The architecture and evolution of cancer neochromosomes.

Cancer Cell 2014 Nov 10;26(5):653-67. Epub 2014 Nov 10.

Cancer Genomics, Peter MacCallum Cancer Centre, East Melbourne, VIC 3002, Australia; Sir Peter MacCallum Department of Oncology, University of Melbourne, VIC 3010, Australia; The Kinghorn Cancer Centre, Garvan Institute of Medical Research, Sydney, NSW 2010, Australia. Electronic address:

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http://www.cell.com/cms/attachment/2020782748/2040814140/mmc
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http://linkinghub.elsevier.com/retrieve/pii/S153561081400373
Publisher Site
http://dx.doi.org/10.1016/j.ccell.2014.09.010DOI Listing
November 2014

Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads.

Bioinformatics 2014 04 2;30(8):1064-1072. Epub 2014 Jan 2.

Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria 3052, Department of Medical Biology, University of Melbourne, Victoria 3010, Melanoma Research Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Department of Pathology, The University of Melbourne, Victoria 3010, NICTA Victoria Laboratory, The University of Melbourne, Victoria 3010, Department of Computing and Information Systems, University of Melbourne, Victoria 3010, Cancer Therapeutics Program, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Sir Peter MacCallum Department of Oncology, The University of Melbourne, Victoria 3010, Department of Mathematics and Statistics, The University of Melbourne, Victoria 3010 and Bioinformatics and Cancer Genomics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Australia Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria 3052, Department of Medical Biology, University of Melbourne, Victoria 3010, Melanoma Research Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Department of Pathology, The University of Melbourne, Victoria 3010, NICTA Victoria Laboratory, The University of Melbourne, Victoria 3010, Department of Computing and Information Systems, University of Melbourne, Victoria 3010, Cancer Therapeutics Program, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Sir Peter MacCallum Department of Oncology, The University of Melbourne, Victoria 3010, Department of Mathematics and Statistics, The University of Melbourne, Victoria 3010 and Bioinformatics and Cancer Genomics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Australia Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria 3052, Department of Medical Biology, University of Melbourne, Victoria 3010, Melanoma Research Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Department of Pathology, The University of Melbourne, Victoria 3010, NICTA Victoria Laboratory, The University of Melbourne, Victoria 3010, Department of Computing and Information Systems, University of Melbourne, Victoria 3010, Cancer Therapeutics Program, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Sir Peter MacCallum Department of Oncology, The University of Melbourne, Victoria 3010, Department of Mathematics and Statistics, The University of Melbourne, Victoria 3010 and Bioinformatics and Cancer Genomics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Australia Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria 3052, Department of Medical Biology, University of Melbourne, Victoria 3010, Melanoma Research Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Department of Pathology, The University of Melbourne, Victoria 3010, NICTA Victoria Laboratory, The University of Melbourne, Victoria 3010, Department of Computing and Information Systems, University of Melbourne, Victoria 3010, Cancer Therapeutics Program, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Sir Peter MacCallum Department of Oncology, The University of Melbourne, Victoria 3010, Department of Mathematics and Statistics, The University of Melbourne, Victoria 3010 and Bioinformatics and Cancer Genomics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Australia.

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http://dx.doi.org/10.1093/bioinformatics/btt767DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3982158PMC
April 2014

Evolution of a contagious cancer: epigenetic variation in Devil Facial Tumour Disease.

Proc Biol Sci 2013 Jan 7;280(1750):20121720. Epub 2012 Nov 7.

Faculty of Veterinary Sciences, University of Sydney, Sydney, New South Wales 2006, Australia.

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http://dx.doi.org/10.1098/rspb.2012.1720DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3574417PMC
January 2013

Evolution of coding and non-coding genes in HOX clusters of a marsupial.

BMC Genomics 2012 Jun 18;13:251. Epub 2012 Jun 18.

ARC Centre of Excellence in Kangaroo Genomics, The University of Melbourne, Melbourne, Victoria 3010, Australia.

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http://dx.doi.org/10.1186/1471-2164-13-251DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3541083PMC
June 2012

The immune gene repertoire of an important viral reservoir, the Australian black flying fox.

BMC Genomics 2012 Jun 20;13:261. Epub 2012 Jun 20.

The Walter and Eliza Hall Institute of Medical Research, Parkville, Melbourne, VIC 3052, Australia.

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http://dx.doi.org/10.1186/1471-2164-13-261DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3436859PMC
June 2012

A limited role for gene duplications in the evolution of platypus venom.

Mol Biol Evol 2012 Jan 3;29(1):167-77. Epub 2011 Aug 3.

Faculty of Veterinary Science, The University of Sydney, Sydney, New South Wales, Australia.

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http://dx.doi.org/10.1093/molbev/msr180DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3663093PMC
January 2012

Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development.

Authors:
Marilyn B Renfree Anthony T Papenfuss Janine E Deakin James Lindsay Thomas Heider Katherine Belov Willem Rens Paul D Waters Elizabeth A Pharo Geoff Shaw Emily S W Wong Christophe M Lefèvre Kevin R Nicholas Yoko Kuroki Matthew J Wakefield Kyall R Zenger Chenwei Wang Malcolm Ferguson-Smith Frank W Nicholas Danielle Hickford Hongshi Yu Kirsty R Short Hannah V Siddle Stephen R Frankenberg Keng Yih Chew Brandon R Menzies Jessica M Stringer Shunsuke Suzuki Timothy A Hore Margaret L Delbridge Hardip R Patel Amir Mohammadi Nanette Y Schneider Yanqiu Hu William O'Hara Shafagh Al Nadaf Chen Wu Zhi-Ping Feng Benjamin G Cocks Jianghui Wang Paul Flicek Stephen M J Searle Susan Fairley Kathryn Beal Javier Herrero Dawn M Carone Yutaka Suzuki Sumio Sugano Atsushi Toyoda Yoshiyuki Sakaki Shinji Kondo Yuichiro Nishida Shoji Tatsumoto Ion Mandiou Arthur Hsu Kaighin A McColl Benjamin Lansdell George Weinstock Elizabeth Kuczek Annette McGrath Peter Wilson Artem Men Mehlika Hazar-Rethinam Allison Hall John Davis David Wood Sarah Williams Yogi Sundaravadanam Donna M Muzny Shalini N Jhangiani Lora R Lewis Margaret B Morgan Geoffrey O Okwuonu San Juana Ruiz Jireh Santibanez Lynne Nazareth Andrew Cree Gerald Fowler Christie L Kovar Huyen H Dinh Vandita Joshi Chyn Jing Fremiet Lara Rebecca Thornton Lei Chen Jixin Deng Yue Liu Joshua Y Shen Xing-Zhi Song Janette Edson Carmen Troon Daniel Thomas Amber Stephens Lankesha Yapa Tanya Levchenko Richard A Gibbs Desmond W Cooper Terence P Speed Asao Fujiyama Jennifer A M Graves Rachel J O'Neill Andrew J Pask Susan M Forrest Kim C Worley

Genome Biol 2011 Aug 29;12(8):R81. Epub 2011 Aug 29.

The Australian Research Council Centre of Excellence in Kangaroo Genomics, Australia.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3277949PMC
August 2011

Immunome database for marsupials and monotremes.

BMC Immunol 2011 Aug 19;12:48. Epub 2011 Aug 19.

Faculty of Veterinary Sciences, University of Sydney, NSW, Australia.

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http://dx.doi.org/10.1186/1471-2172-12-48DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3173380PMC
August 2011

Genomic identification of chemokines and cytokines in opossum.

J Interferon Cytokine Res 2011 Mar 8;31(3):317-30. Epub 2011 Jan 8.

1 Faculty of Veterinary Sciences, University of Sydney , Camperdown, Australia .

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http://dx.doi.org/10.1089/jir.2010.0045DOI Listing
March 2011

Novel venom gene discovery in the platypus.

Genome Biol 2010 29;11(9):R95. Epub 2010 Sep 29.

Faculty of Veterinary Science, The University of Sydney, Regimental Crescent, Camperdown, NSW 2006, Australia.

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http://dx.doi.org/10.1186/gb-2010-11-9-r95DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2965387PMC
February 2011

A novel family of Apicomplexan glideosome-associated proteins with an inner membrane-anchoring role.

J Biol Chem 2009 Sep 26;284(37):25353-63. Epub 2009 Jun 26.

Macfarlane Burnet Institute for Medical Research & Public Health, Melbourne, Victoria 3004, Australia.

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http://dx.doi.org/10.1074/jbc.M109.036772DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2757237PMC
September 2009

Identification of natural killer cell receptor clusters in the platypus genome reveals an expansion of C-type lectin genes.

Immunogenetics 2009 Aug 14;61(8):565-79. Epub 2009 Jul 14.

Faculty of Veterinary Science, University of Sydney, B19 RMC Gunn, Sydney, NSW, 2006, Australia.

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http://link.springer.com/10.1007/s00251-009-0386-7
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http://dx.doi.org/10.1007/s00251-009-0386-7DOI Listing
August 2009