Publications by authors named "Anthony J Greenberg"

25Publications

Low Additive Genetic Variation in a Trait Under Selection in Domesticated Rice.

G3 (Bethesda) 2020 07 7;10(7):2435-2443. Epub 2020 Jul 7.

Section of Plant Breeding and Genetics, Cornell University, Ithaca, NY,

View Article and Find Full Text PDF
July 2020

Prevalence of cryptic species in morphologically uniform taxa - Fast speciation and evolutionary radiation in Asian frogs.

Mol Phylogenet Evol 2018 10 18;127:723-731. Epub 2018 Jun 18.

The Museum of Biology, School of Life Sciences, Sun Yat-sen University, 510275 Guangzhou, China. Electronic address:

View Article and Find Full Text PDF
October 2018

Fast Ordered Sampling of DNA Sequence Variants.

G3 (Bethesda) 2018 05 4;8(5):1455-1460. Epub 2018 May 4.

Bayesic Research, Ithaca, NY 14850

View Article and Find Full Text PDF
May 2018

Extremely low genetic diversity across mangrove taxa reflects past sea level changes and hints at poor future responses.

Glob Chang Biol 2018 04 28;24(4):1741-1748. Epub 2017 Nov 28.

State Key Laboratory of Biocontrol, Guangdong Key Lab of Plant Resources, Key Laboratory of Biodiversity Dynamics and Conservation of Guangdong Higher Education Institutes, School of Life Science, Sun Yat-Sen University, Guangzhou, Guangdong, China.

View Article and Find Full Text PDF
April 2018

The emergence of the hyperinvasive vine, Mikania micrantha (Asteraceae), via admixture and founder events inferred from population transcriptomics.

Mol Ecol 2017 Jul 19;26(13):3405-3423. Epub 2017 Apr 19.

State Key Laboratory of Biocontrol and Guangdong Provincial Key Laboratory of Plant Resources, Sun Yat-sen University, Guangzhou, China.

View Article and Find Full Text PDF
July 2017

Robust phenotyping strategies for evaluation of stem non-structural carbohydrates (NSC) in rice.

J Exp Bot 2016 11 5;67(21):6125-6138. Epub 2016 Oct 5.

Section of Plant Breeding and Genetics, School of Integrated Plant Sciences, Cornell University, Ithaca, NY 14853-1901, USA

View Article and Find Full Text PDF
November 2016

Global diversity lines - a five-continent reference panel of sequenced Drosophila melanogaster strains.

G3 (Bethesda) 2015 Feb 11;5(4):593-603. Epub 2015 Feb 11.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853 Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, New York 14853

View Article and Find Full Text PDF
February 2015

High-Resolution Inflorescence Phenotyping Using a Novel Image-Analysis Pipeline, PANorama.

Plant Physiol 2014 Jun 2;165(2):479-495. Epub 2014 Apr 2.

Department of Plant Biology (S.C., S.R.M.) and Department of Plant Breeding and Genetics (A.X.F., A.S., Z.W., A.J.G., S.R.M.), Cornell University, Ithaca, New York 14853; andDepartment of Information Systems Institute of Computing, University of Campinas, CEP 13083-852 Sao Paulo, Brazil (A.X.F.)

View Article and Find Full Text PDF
June 2014

Age-dependent transition from cell-level to population-level control in murine intestinal homeostasis revealed by coalescence analysis.

PLoS Genet 2013 28;9(2):e1003326. Epub 2013 Feb 28.

Center for Computational Biology and Laboratory of Disease Genomics and Individualized Medicine, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.

View Article and Find Full Text PDF
June 2013

Environmental and genetic perturbations reveal different networks of metabolic regulation.

Mol Syst Biol 2011 Dec 20;7:563. Epub 2011 Dec 20.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.

View Article and Find Full Text PDF
December 2011

Two evolutionary histories in the genome of rice: the roles of domestication genes.

PLoS Genet 2011 Jun 9;7(6):e1002100. Epub 2011 Jun 9.

State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources, Sun Yat-Sen University, Guangzhou, China.

View Article and Find Full Text PDF
June 2011

Genome-wide misexpression of X-linked versus autosomal genes associated with hybrid male sterility.

Genome Res 2010 Aug 28;20(8):1097-102. Epub 2010 May 28.

CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100029, People's Republic of China.

View Article and Find Full Text PDF
August 2010

A hierarchical Bayesian model for a novel sparse partial diallel crossing design.

Genetics 2010 May 15;185(1):361-73. Epub 2010 Feb 15.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.

View Article and Find Full Text PDF
May 2010

Evolutionary constraint and adaptation in the metabolic network of Drosophila.

Mol Biol Evol 2008 Dec 17;25(12):2537-46. Epub 2008 Sep 17.

Department of Molecular Biology and Genetics, Cornell University, USA.

View Article and Find Full Text PDF
December 2008

Evolution of protein-coding genes in Drosophila.

Trends Genet 2008 Mar 4;24(3):114-23. Epub 2008 Feb 4.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.

View Article and Find Full Text PDF
March 2008

Evolution of genes and genomes on the Drosophila phylogeny.

Authors:
Andrew G Clark Michael B Eisen Douglas R Smith Casey M Bergman Brian Oliver Therese A Markow Thomas C Kaufman Manolis Kellis William Gelbart Venky N Iyer Daniel A Pollard Timothy B Sackton Amanda M Larracuente Nadia D Singh Jose P Abad Dawn N Abt Boris Adryan Montserrat Aguade Hiroshi Akashi Wyatt W Anderson Charles F Aquadro David H Ardell Roman Arguello Carlo G Artieri Daniel A Barbash Daniel Barker Paolo Barsanti Phil Batterham Serafim Batzoglou Dave Begun Arjun Bhutkar Enrico Blanco Stephanie A Bosak Robert K Bradley Adrianne D Brand Michael R Brent Angela N Brooks Randall H Brown Roger K Butlin Corrado Caggese Brian R Calvi A Bernardo de Carvalho Anat Caspi Sergio Castrezana Susan E Celniker Jean L Chang Charles Chapple Sourav Chatterji Asif Chinwalla Alberto Civetta Sandra W Clifton Josep M Comeron James C Costello Jerry A Coyne Jennifer Daub Robert G David Arthur L Delcher Kim Delehaunty Chuong B Do Heather Ebling Kevin Edwards Thomas Eickbush Jay D Evans Alan Filipski Sven Findeiss Eva Freyhult Lucinda Fulton Robert Fulton Ana C L Garcia Anastasia Gardiner David A Garfield Barry E Garvin Greg Gibson Don Gilbert Sante Gnerre Jennifer Godfrey Robert Good Valer Gotea Brenton Gravely Anthony J Greenberg Sam Griffiths-Jones Samuel Gross Roderic Guigo Erik A Gustafson Wilfried Haerty Matthew W Hahn Daniel L Halligan Aaron L Halpern Gillian M Halter Mira V Han Andreas Heger LaDeana Hillier Angie S Hinrichs Ian Holmes Roger A Hoskins Melissa J Hubisz Dan Hultmark Melanie A Huntley David B Jaffe Santosh Jagadeeshan William R Jeck Justin Johnson Corbin D Jones William C Jordan Gary H Karpen Eiko Kataoka Peter D Keightley Pouya Kheradpour Ewen F Kirkness Leonardo B Koerich Karsten Kristiansen Dave Kudrna Rob J Kulathinal Sudhir Kumar Roberta Kwok Eric Lander Charles H Langley Richard Lapoint Brian P Lazzaro So-Jeong Lee Lisa Levesque Ruiqiang Li Chiao-Feng Lin Michael F Lin Kerstin Lindblad-Toh Ana Llopart Manyuan Long Lloyd Low Elena Lozovsky Jian Lu Meizhong Luo Carlos A Machado Wojciech Makalowski Mar Marzo Muneo Matsuda Luciano Matzkin Bryant McAllister Carolyn S McBride Brendan McKernan Kevin McKernan Maria Mendez-Lago Patrick Minx Michael U Mollenhauer Kristi Montooth Stephen M Mount Xu Mu Eugene Myers Barbara Negre Stuart Newfeld Rasmus Nielsen Mohamed A F Noor Patrick O'Grady Lior Pachter Montserrat Papaceit Matthew J Parisi Michael Parisi Leopold Parts Jakob S Pedersen Graziano Pesole Adam M Phillippy Chris P Ponting Mihai Pop Damiano Porcelli Jeffrey R Powell Sonja Prohaska Kim Pruitt Marta Puig Hadi Quesneville Kristipati Ravi Ram David Rand Matthew D Rasmussen Laura K Reed Robert Reenan Amy Reily Karin A Remington Tania T Rieger Michael G Ritchie Charles Robin Yu-Hui Rogers Claudia Rohde Julio Rozas Marc J Rubenfield Alfredo Ruiz Susan Russo Steven L Salzberg Alejandro Sanchez-Gracia David J Saranga Hajime Sato Stephen W Schaeffer Michael C Schatz Todd Schlenke Russell Schwartz Carmen Segarra Rama S Singh Laura Sirot Marina Sirota Nicholas B Sisneros Chris D Smith Temple F Smith John Spieth Deborah E Stage Alexander Stark Wolfgang Stephan Robert L Strausberg Sebastian Strempel David Sturgill Granger Sutton Granger G Sutton Wei Tao Sarah Teichmann Yoshiko N Tobari Yoshihiko Tomimura Jason M Tsolas Vera L S Valente Eli Venter J Craig Venter Saverio Vicario Filipe G Vieira Albert J Vilella Alfredo Villasante Brian Walenz Jun Wang Marvin Wasserman Thomas Watts Derek Wilson Richard K Wilson Rod A Wing Mariana F Wolfner Alex Wong Gane Ka-Shu Wong Chung-I Wu Gabriel Wu Daisuke Yamamoto Hsiao-Pei Yang Shiaw-Pyng Yang James A Yorke Kiyohito Yoshida Evgeny Zdobnov Peili Zhang Yu Zhang Aleksey V Zimin Jennifer Baldwin Amr Abdouelleil Jamal Abdulkadir Adal Abebe Brikti Abera Justin Abreu St Christophe Acer Lynne Aftuck Allen Alexander Peter An Erica Anderson Scott Anderson Harindra Arachi Marc Azer Pasang Bachantsang Andrew Barry Tashi Bayul Aaron Berlin Daniel Bessette Toby Bloom Jason Blye Leonid Boguslavskiy Claude Bonnet Boris Boukhgalter Imane Bourzgui Adam Brown Patrick Cahill Sheridon Channer Yama Cheshatsang Lisa Chuda Mieke Citroen Alville Collymore Patrick Cooke Maura Costello Katie D'Aco Riza Daza Georgius De Haan Stuart DeGray Christina DeMaso Norbu Dhargay Kimberly Dooley Erin Dooley Missole Doricent Passang Dorje Kunsang Dorjee Alan Dupes Richard Elong Jill Falk Abderrahim Farina Susan Faro Diallo Ferguson Sheila Fisher Chelsea D Foley Alicia Franke Dennis Friedrich Loryn Gadbois Gary Gearin Christina R Gearin Georgia Giannoukos Tina Goode Joseph Graham Edward Grandbois Sharleen Grewal Kunsang Gyaltsen Nabil Hafez Birhane Hagos Jennifer Hall Charlotte Henson Andrew Hollinger Tracey Honan Monika D Huard Leanne Hughes Brian Hurhula M Erii Husby Asha Kamat Ben Kanga Seva Kashin Dmitry Khazanovich Peter Kisner Krista Lance Marcia Lara William Lee Niall Lennon Frances Letendre Rosie LeVine Alex Lipovsky Xiaohong Liu Jinlei Liu Shangtao Liu Tashi Lokyitsang Yeshi Lokyitsang Rakela Lubonja Annie Lui Pen MacDonald Vasilia Magnisalis Kebede Maru Charles Matthews William McCusker Susan McDonough Teena Mehta James Meldrim Louis Meneus Oana Mihai Atanas Mihalev Tanya Mihova Rachel Mittelman Valentine Mlenga Anna Montmayeur Leonidas Mulrain Adam Navidi Jerome Naylor Tamrat Negash Thu Nguyen Nga Nguyen Robert Nicol Choe Norbu Nyima Norbu Nathaniel Novod Barry O'Neill Sahal Osman Eva Markiewicz Otero L Oyono Christopher Patti Pema Phunkhang Fritz Pierre Margaret Priest Sujaa Raghuraman Filip Rege Rebecca Reyes Cecil Rise Peter Rogov Keenan Ross Elizabeth Ryan Sampath Settipalli Terry Shea Ngawang Sherpa Lu Shi Diana Shih Todd Sparrow Jessica Spaulding John Stalker Nicole Stange-Thomann Sharon Stavropoulos Catherine Stone Christopher Strader Senait Tesfaye Talene Thomson Yama Thoulutsang Dawa Thoulutsang Kerri Topham Ira Topping Tsamla Tsamla Helen Vassiliev Andy Vo Tsering Wangchuk Tsering Wangdi Michael Weiand Jane Wilkinson Adam Wilson Shailendra Yadav Geneva Young Qing Yu Lisa Zembek Danni Zhong Andrew Zimmer Zac Zwirko David B Jaffe Pablo Alvarez Will Brockman Jonathan Butler CheeWhye Chin Sante Gnerre Manfred Grabherr Michael Kleber Evan Mauceli Iain MacCallum

Nature 2007 Nov;450(7167):203-18

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, USA.

View Article and Find Full Text PDF
November 2007

Proper control of genetic background with precise allele substitution: a comment on Coyne and Elwyn.

Evolution 2006 Mar;60(3):623-5; discussion 626-7

Department of Ecology and Evolution, University of Chicago, Illinois 60637, USA.

View Article and Find Full Text PDF
March 2006

Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Molecular genetics of natural populations.

Mol Biol Evol 2006 May 16;23(5):883-6. Epub 2005 Dec 16.

Department of Ecology and Evolution, The University of Chicago, IL, USA.

View Article and Find Full Text PDF
May 2006

Adaptive loss of an old duplicated gene during incipient speciation.

Mol Biol Evol 2006 Feb 26;23(2):401-10. Epub 2005 Oct 26.

Department of Ecology and Evolution, The University of Chicago, USA.

View Article and Find Full Text PDF
February 2006

Ecological adaptation during incipient speciation revealed by precise gene replacement.

Science 2003 Dec;302(5651):1754-7

Department of Ecology and Evolution, The University of Chicago, Chicago, IL 60637, USA.

View Article and Find Full Text PDF
December 2003