Anthony J Cox

Anthony J Cox

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Anthony J Cox

Anthony J Cox

Publications by authors named "Anthony J Cox"

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16Publications

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Canvas SPW: calling de novo copy number variants in pedigrees.

Bioinformatics 2018 02;34(3):516-518

Illumina Cambridge Ltd., Chesterford Research Park, Little Chesterford, Essex CB10?1XL, UK.

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http://dx.doi.org/10.1093/bioinformatics/btx618DOI Listing
February 2018

tHapMix: simulating tumour samples through haplotype mixtures.

Bioinformatics 2017 01 7;33(2):280-282. Epub 2016 Sep 7.

Chesterford Research Park, Illumina Cambridge Ltd, Little Chesterford, CB10 1XL, UK.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btw589DOI Listing
January 2017

AKT: ancestry and kinship toolkit.

Bioinformatics 2017 01 14;33(1):142-144. Epub 2016 Sep 14.

Illumina Cambridge Ltd., Chesterford Research Park, Little Chesterford, Essex CB10 1XL, UK.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btw576DOI Listing
January 2017

Rapid genotype refinement for whole-genome sequencing data using multi-variate normal distributions.

Bioinformatics 2016 08 9;32(15):2306-12. Epub 2016 Mar 9.

Illumina Cambridge Ltd, Chesterford Research Park, Little Chesterford, Essex CB10 1XL, UK.

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http://dx.doi.org/10.1093/bioinformatics/btw097DOI Listing
August 2016

NxTrim: optimized trimming of Illumina mate pair reads.

Bioinformatics 2015 Jun 5;31(12):2035-7. Epub 2015 Feb 5.

Computational Biology Group and Technology Development, Illumina Cambridge Ltd., Chesterford Research Park, Little Chesterford, Essex CB10 1XL, UK.

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http://dx.doi.org/10.1093/bioinformatics/btv057DOI Listing
June 2015

NxRepair: error correction in de novo sequence assembly using Nextera mate pairs.

PeerJ 2015 2;3:e996. Epub 2015 Jun 2.

Illumina Cambridge, Chesterford Research Park , Essex , UK.

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http://dx.doi.org/10.7717/peerj.996DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4458127PMC
June 2015

BEETL-fastq: a searchable compressed archive for DNA reads.

Bioinformatics 2014 Oct 20;30(19):2796-801. Epub 2014 Jun 20.

Computational Biology Group, Illumina Cambridge Ltd., Little Chesterford, Essex CB10 1XL, UK.

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http://dx.doi.org/10.1093/bioinformatics/btu387DOI Listing
October 2014

Adaptive reference-free compression of sequence quality scores.

Bioinformatics 2014 Jan 9;30(1):24-30. Epub 2013 May 9.

Computational Biology Group, Illumina Cambridge Ltd., Chesterford Research Park, Little Chesterford, Essex CB10 1XL, UK and Dipartimento di Matematica e Informatica, University of Palermo, Via Archirafi 34, 90123 Palermo, Italy.

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http://dx.doi.org/10.1093/bioinformatics/btt257DOI Listing
January 2014

metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences.

BMC Bioinformatics 2013 10;14 Suppl 5:S2. Epub 2013 Apr 10.

Computational Biology Group, Illumina Cambridge Ltd,, Chesterford Research Park, Little Chesterford, Essex, United Kingdom.

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http://dx.doi.org/10.1186/1471-2105-14-S5-S2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3622627PMC
December 2013

Haplotype estimation using sequencing reads.

Am J Hum Genet 2013 Oct;93(4):687-96

Department of Statistics, University of Oxford, Oxford OX1 3TG, UK.

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http://dx.doi.org/10.1016/j.ajhg.2013.09.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3791270PMC
October 2013

Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform.

Bioinformatics 2012 Jun 3;28(11):1415-9. Epub 2012 May 3.

Computational Biology Group, Illumina Cambridge Ltd., Chesterford Research Park, Little Chesterford, Essex, UK.

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http://dx.doi.org/10.1093/bioinformatics/bts173DOI Listing
June 2012

CNAseg--a novel framework for identification of copy number changes in cancer from second-generation sequencing data.

Bioinformatics 2010 Dec 21;26(24):3051-8. Epub 2010 Oct 21.

Cancer Research UK Cambridge Research Institute, Li Ka Shing Centre, Cambridge, UK.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btq587DOI Listing
December 2010

Accurate whole human genome sequencing using reversible terminator chemistry.

Authors:
David R Bentley Shankar Balasubramanian Harold P Swerdlow Geoffrey P Smith John Milton Clive G Brown Kevin P Hall Dirk J Evers Colin L Barnes Helen R Bignell Jonathan M Boutell Jason Bryant Richard J Carter R Keira Cheetham Anthony J Cox Darren J Ellis Michael R Flatbush Niall A Gormley Sean J Humphray Leslie J Irving Mirian S Karbelashvili Scott M Kirk Heng Li Xiaohai Liu Klaus S Maisinger Lisa J Murray Bojan Obradovic Tobias Ost Michael L Parkinson Mark R Pratt Isabelle M J Rasolonjatovo Mark T Reed Roberto Rigatti Chiara Rodighiero Mark T Ross Andrea Sabot Subramanian V Sankar Aylwyn Scally Gary P Schroth Mark E Smith Vincent P Smith Anastassia Spiridou Peta E Torrance Svilen S Tzonev Eric H Vermaas Klaudia Walter Xiaolin Wu Lu Zhang Mohammed D Alam Carole Anastasi Ify C Aniebo David M D Bailey Iain R Bancarz Saibal Banerjee Selena G Barbour Primo A Baybayan Vincent A Benoit Kevin F Benson Claire Bevis Phillip J Black Asha Boodhun Joe S Brennan John A Bridgham Rob C Brown Andrew A Brown Dale H Buermann Abass A Bundu James C Burrows Nigel P Carter Nestor Castillo Maria Chiara E Catenazzi Simon Chang R Neil Cooley Natasha R Crake Olubunmi O Dada Konstantinos D Diakoumakos Belen Dominguez-Fernandez David J Earnshaw Ugonna C Egbujor David W Elmore Sergey S Etchin Mark R Ewan Milan Fedurco Louise J Fraser Karin V Fuentes Fajardo W Scott Furey David George Kimberley J Gietzen Colin P Goddard George S Golda Philip A Granieri David E Green David L Gustafson Nancy F Hansen Kevin Harnish Christian D Haudenschild Narinder I Heyer Matthew M Hims Johnny T Ho Adrian M Horgan Katya Hoschler Steve Hurwitz Denis V Ivanov Maria Q Johnson Terena James T A Huw Jones Gyoung-Dong Kang Tzvetana H Kerelska Alan D Kersey Irina Khrebtukova Alex P Kindwall Zoya Kingsbury Paula I Kokko-Gonzales Anil Kumar Marc A Laurent Cynthia T Lawley Sarah E Lee Xavier Lee Arnold K Liao Jennifer A Loch Mitch Lok Shujun Luo Radhika M Mammen John W Martin Patrick G McCauley Paul McNitt Parul Mehta Keith W Moon Joe W Mullens Taksina Newington Zemin Ning Bee Ling Ng Sonia M Novo Michael J O'Neill Mark A Osborne Andrew Osnowski Omead Ostadan Lambros L Paraschos Lea Pickering Andrew C Pike Alger C Pike D Chris Pinkard Daniel P Pliskin Joe Podhasky Victor J Quijano Come Raczy Vicki H Rae Stephen R Rawlings Ana Chiva Rodriguez Phyllida M Roe John Rogers Maria C Rogert Bacigalupo Nikolai Romanov Anthony Romieu Rithy K Roth Natalie J Rourke Silke T Ruediger Eli Rusman Raquel M Sanches-Kuiper Martin R Schenker Josefina M Seoane Richard J Shaw Mitch K Shiver Steven W Short Ning L Sizto Johannes P Sluis Melanie A Smith Jean Ernest Sohna Sohna Eric J Spence Kim Stevens Neil Sutton Lukasz Szajkowski Carolyn L Tregidgo Gerardo Turcatti Stephanie Vandevondele Yuli Verhovsky Selene M Virk Suzanne Wakelin Gregory C Walcott Jingwen Wang Graham J Worsley Juying Yan Ling Yau Mike Zuerlein Jane Rogers James C Mullikin Matthew E Hurles Nick J McCooke John S West Frank L Oaks Peter L Lundberg David Klenerman Richard Durbin Anthony J Smith

Nature 2008 Nov;456(7218):53-9

Illumina Cambridge Ltd. (Formerly Solexa Ltd), Chesterford Research Park, Little Chesterford, Nr Saffron Walden, Essex CB10 1XL, UK.

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http://dx.doi.org/10.1038/nature07517DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2581791PMC
November 2008