Anthony Fodor

Anthony Fodor

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Anthony Fodor

Anthony Fodor

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Whole Genome Sequencing detects Inter-Facility Transmission of Carbapenem-resistant Klebsiella pneumoniae.

J Infect 2019 Mar 29;78(3):187-199. Epub 2018 Nov 29.

Department of Bioinformatics and Genomics, University of North Carolina at Charlotte, 9331 Robert D. Snyder Road, Charlotte NC 28223, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S01634453183034
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http://dx.doi.org/10.1016/j.jinf.2018.11.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6408229PMC
March 2019

Human colon mucosal biofilms from healthy or colon cancer hosts are carcinogenic.

J Clin Invest 2019 Mar 11;130. Epub 2019 Mar 11.

Bloomberg-Kimmel Institute for Immunotherapy, Departments of Oncology and Medicine and the Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins School of Medicine, Johns Hopkins Medical Institutions, Baltimore, Maryland, USA.

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http://dx.doi.org/10.1172/JCI124196DOI Listing
March 2019

The Role of the Gut Microbiota in Sustained Weight Loss Following Roux-en-Y Gastric Bypass Surgery.

Obes Surg 2019 Jan 2. Epub 2019 Jan 2.

Department of Pharmaceutical Sciences, North Dakota State University, 1401 Albrecht Blvd, Fargo, ND, 58102, USA.

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http://dx.doi.org/10.1007/s11695-018-03653-yDOI Listing
January 2019

Initial microbial community of the neonatal stomach immediately after birth.

Gut Microbes 2018 Nov 7:1-9. Epub 2018 Nov 7.

c Department of Bioinformatics and Genomics , University of North Carolina at Charlotte , Charlotte , USA.

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http://dx.doi.org/10.1080/19490976.2018.1520578DOI Listing
November 2018

Rifaximin is associated with modest, transient decreases in multiple taxa in the gut microbiota of patients with diarrhoea-predominant irritable bowel syndrome.

Gut Microbes 2019 18;10(1):22-33. Epub 2018 Jul 18.

f Department of Nutrition and Division of Gastroenterology and Hepatology , University of North Carolina , Chapel Hill , North Carolina , USA.

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http://dx.doi.org/10.1080/19490976.2018.1460013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6363070PMC
July 2018

Microbiota-Derived Metabolic Factors Reduce Campylobacteriosis in Mice.

Gastroenterology 2018 05 1;154(6):1751-1763.e2. Epub 2018 Feb 1.

Department of Medicine, University of Florida, Gainesville, Florida; Department of Infectious Diseases and Pathology, University of Florida, Gainesville, Florida; Department of Anatomy and Cell Biology, University of Florida, Gainesville, Florida. Electronic address:

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http://dx.doi.org/10.1053/j.gastro.2018.01.042DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5927838PMC
May 2018

Interactions Between Stress and Sex in Microbial Responses Within the Microbiota-Gut-Brain Axis in a Mouse Model.

Psychosom Med 2018 May;80(4):361-369

From the Department of Bioinformatics and Genomics (Tsilimigras, Gharaibeh, Sioda, Fodor), University of North Carolina at Charlotte; Department of Veterinary Microbiology and Preventive Medicine (Gray, Lyte), College of Veterinary Medicine, Iowa State University, Ames; and Department of Medicine (Gharaibeh), Division of Gastroenterology, University of Florida, Gainesville.

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http://dx.doi.org/10.1097/PSY.0000000000000572DOI Listing
May 2018

Inter-niche and inter-individual variation in gut microbial community assessment using stool, rectal swab, and mucosal samples.

Sci Rep 2018 Mar 7;8(1):4139. Epub 2018 Mar 7.

Department of Medicine, Division of Epidemiology, Vanderbilt Epidemiology Center, Vanderbilt University School of Medicine, Vanderbilt-Ingram Cancer Center, Vanderbilt University Medical Center, Nashville, TN, USA.

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http://dx.doi.org/10.1038/s41598-018-22408-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5841359PMC
March 2018

An Aberrant Microbiota is not Strongly Associated with Incidental Colonic Diverticulosis.

Sci Rep 2018 Mar 21;8(1):4951. Epub 2018 Mar 21.

Center for Gastrointestinal Biology and Disease, University of North Carolina, Chapel Hill, NC, USA.

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http://dx.doi.org/10.1038/s41598-018-23023-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5862835PMC
March 2018

Recent urbanization in China is correlated with a Westernized microbiome encoding increased virulence and antibiotic resistance genes.

Microbiome 2017 09 15;5(1):121. Epub 2017 Sep 15.

Department of Nutrition, Gillings School of Global Public Health, University of North Carolina, Chapel Hill, NC, 27516, USA.

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http://dx.doi.org/10.1186/s40168-017-0338-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5603068PMC
September 2017

Carcinogenesis and therapeutics: the microbiota perspective.

Nat Microbiol 2017 Feb 22;2:17008. Epub 2017 Feb 22.

Department of Medicine, University of Florida, Gainesville, Florida 32611, USA.

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http://dx.doi.org/10.1038/nmicrobiol.2017.8DOI Listing
February 2017

Early-Life Sugar Consumption Affects the Rat Microbiome Independently of Obesity.

J Nutr 2017 01 30;147(1):20-28. Epub 2016 Nov 30.

Human and Evolutionary Biology Section, Department of Biological Sciences,

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http://dx.doi.org/10.3945/jn.116.238816DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5177734PMC
January 2017

Gut Microbiota and a Selectively Bred Taste Phenotype: A Novel Model of Microbiome-Behavior Relationships.

Psychosom Med 2016 06;78(5):610-9

From the Department of Veterinary Microbiology and Preventive Medicine, School of Veterinary Medicine (Lyte), Iowa State University, Ames, Iowa; Department of Immunotherapeutics and Biotechnology (Lyte), Texas Tech University Health Sciences Center, Abilene, Texas; Department of Bioinformatics and Genomics (Fodor), University of North Carolina at Charlotte, North Carolina; School of Medicine (Perez-Chanona), University of North Carolina at Chapel Hill, Chapel Hill, North Carolina; Division of Gastroenterology, Department of Medicine (Jobin), University of Florida College of Medicine, Gainesville, Florida; and Occidental College (Chapman, Martin, Dess), Los Angeles, California.

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http://dx.doi.org/10.1097/PSY.0000000000000318DOI Listing
June 2016

Compositional data analysis of the microbiome: fundamentals, tools, and challenges.

Ann Epidemiol 2016 05 31;26(5):330-5. Epub 2016 Mar 31.

Department of Bioinformatics and Genomics, UNC Charlotte, Bioinformatics Building, The University of North Carolina, Charlotte 9201, University City Blvd, Charlotte. Electronic address:

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http://dx.doi.org/10.1016/j.annepidem.2016.03.002DOI Listing
May 2016

Intrinsic association between diet and the gut microbiome: current evidence.

Nutr Diet Suppl 2015 7;7:69-76. Epub 2015 Oct 7.

Department of Bioinformatics and Genomics, University of North Carolina at Charlotte, Charlotte, North Carolina, USA.

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http://dx.doi.org/10.2147/NDS.S62362DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5499713PMC
October 2015

Analysis of changes in diversity and abundance of the microbial community in a cystic fibrosis patient over a multiyear period.

J Clin Microbiol 2015 Jan 12;53(1):237-47. Epub 2014 Nov 12.

Department of Biological Sciences, University of North Carolina at Charlotte, Charlotte, North Carolina, USA

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http://dx.doi.org/10.1128/JCM.02555-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4290929PMC
January 2015

Utilizing "omics" tools to study the complex gut ecosystem.

Authors:
Anthony Fodor

Adv Exp Med Biol 2014 ;817:25-38

Bioinformatics and Genomics, UNC Charlotte, 9201 University City BLVD, Charlotte, NC, 28223, USA,

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http://dx.doi.org/10.1007/978-1-4939-0897-4_2DOI Listing
November 2014

Microbial genomic analysis reveals the essential role of inflammation in bacteria-induced colorectal cancer.

Nat Commun 2014 Sep 3;5:4724. Epub 2014 Sep 3.

1] Department of Medicine, University of Florida, Gainesville, Florida 32611, USA [2] Department of Infectious Diseases and Pathology, University of Florida, Gainesville, Florida 32611, USA.

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http://www.nature.com/articles/ncomms5724
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http://dx.doi.org/10.1038/ncomms5724DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4155410PMC
September 2014

Mouse Paneth cell antimicrobial function is independent of Nod2.

Gut 2014 Jun 19;63(6):903-10. Epub 2013 Mar 19.

Department of Medicine, Division of Gastroenterology and Hepatology, University of North Carolina at Chapel Hill, , Chapel Hill, North Carolina, USA.

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http://dx.doi.org/10.1136/gutjnl-2012-304190DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3844066PMC
June 2014

Reply to KN Litwak and S Levin.

Am J Clin Nutr 2014 Jan;99(1):210

Department of Pathology Section on Comparative Medicine and Lipid Sciences Wake Forest University Health Sciences Medical Center Boulevard Winston-Salem, NC 27127 E-mail:

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http://dx.doi.org/10.3945/ajcn.113.074633DOI Listing
January 2014

Reply to JS White.

Am J Clin Nutr 2013 Nov;98(5):1370

Department of Pathology Section on Comparative Medicine and Lipid Sciences Wake Forest University Health Sciences Medical Center Boulevard Winston Salem, NC 27127 E-mail:

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https://academic.oup.com/ajcn/article/98/5/1370/4577402
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http://dx.doi.org/10.3945/ajcn.113.072264DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3798085PMC
November 2013

Dietary fructose induces endotoxemia and hepatic injury in calorically controlled primates.

Am J Clin Nutr 2013 Aug;98(2):349-57

Department of Pathology Section on Comparative Medicine and Lipid Sciences, Wake Forest University Health Sciences, Medical Center Boulevard, Winston-Salem, NC 27127, USA.

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http://dx.doi.org/10.3945/ajcn.112.057331DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3712547PMC
August 2013

The "most wanted" taxa from the human microbiome for whole genome sequencing.

PLoS One 2012 26;7(7):e41294. Epub 2012 Jul 26.

Department of Bioinformatics and Genomics, University of North Carolina at Charlotte, Charlotte, North Carolina, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0041294PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3406062PMC
March 2013

Highlights of the 2012 Research Workshop: Using nutrigenomics and metabolomics in clinical nutrition research.

JPEN J Parenter Enteral Nutr 2013 Mar 5;37(2):190-200. Epub 2012 Oct 5.

University of North Carolina at Chapel Hill, Kannapolis, North Carolina, USA.

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http://dx.doi.org/10.1177/0148607112462401DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3593226PMC
March 2013

A core human microbiome as viewed through 16S rRNA sequence clusters.

PLoS One 2012 13;7(6):e34242. Epub 2012 Jun 13.

Josephine Bay Paul Center, Marine Biological Laboratory, Woods Hole, Massachusetts, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0034242PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3374614PMC
December 2012

Peak Studio: a tool for the visualization and analysis of fragment analysis files.

Environ Microbiol Rep 2012 Oct 27;4(5):556-61. Epub 2012 Jul 27.

Department of Bioinformatics and Genomics, University of North Carolina, Charlotte, NC, USA.

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http://dx.doi.org/10.1111/j.1758-2229.2012.00368.xDOI Listing
October 2012

A critical evaluation of correlated mutation algorithms and coevolution within allosteric mechanisms.

Methods Mol Biol 2012 ;796:385-98

Department of Bioinformatics and Genomics, University of North Carolina at Charlotte, Charlotte, NC, USA.

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http://dx.doi.org/10.1007/978-1-61779-334-9_21DOI Listing
May 2012

Bugs, stool, and the irritable bowel syndrome: too much is as bad as too little?

Gastroenterology 2011 Nov 22;141(5):1555-9. Epub 2011 Sep 22.

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http://dx.doi.org/10.1053/j.gastro.2011.09.019DOI Listing
November 2011

Association between composition of the human gastrointestinal microbiome and development of fatty liver with choline deficiency.

Gastroenterology 2011 Mar 1;140(3):976-86. Epub 2010 Dec 1.

Department of Bioinformatics and Genomics, University of North Carolina, Charlotte, North Carolina 28223, USA.

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http://dx.doi.org/10.1053/j.gastro.2010.11.049DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3049827PMC
March 2011

Gut microbial diversity is reduced by the probiotic VSL#3 and correlates with decreased TNBS-induced colitis.

Inflamm Bowel Dis 2011 Jan;17(1):289-97

Department of Medicine, Division of Gastroenterology and Hepatology and Center for Gastrointestinal Biology and Disease, University of North Carolina at Chapel Hill, North Carolina, USA.

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http://dx.doi.org/10.1002/ibd.21366DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2953593PMC
January 2011

Accurate estimates of microarray target concentration from a simple sequence-independent Langmuir model.

PLoS One 2010 Dec 30;5(12):e14464. Epub 2010 Dec 30.

Department of Bioinformatics and Genomics, The University of North Carolina at Charlotte, Charlotte, North Carolina, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0014464PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3012684PMC
December 2010

Convergent evolution of alternative splices at domain boundaries of the BK channel.

Annu Rev Physiol 2009 ;71:19-36

Bioinformatics Research Center, Cameron Applied Research Center, University of North Carolina, Charlotte, North Carolina 28223, USA.

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http://dx.doi.org/10.1146/annurev.physiol.010908.163124DOI Listing
July 2009

Effects of experimental choices and analysis noise on surveys of the "rare biosphere".

Appl Environ Microbiol 2009 May 6;75(10):3263-70. Epub 2009 Mar 6.

Department of Bioinformatics and Genomics, University of North Carolina at Charlotte, Charlotte, NC 28223, USA.

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http://dx.doi.org/10.1128/AEM.01931-08DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2681628PMC
May 2009

Molecular diversity of a North Carolina wastewater treatment plant as revealed by pyrosequencing.

Appl Environ Microbiol 2009 Mar 29;75(6):1688-96. Epub 2008 Dec 29.

Bioinformatics Research Center, UNC Charlotte, 9201 University City Blvd., Charlotte, NC 28223, USA.

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http://dx.doi.org/10.1128/AEM.01210-08DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2655459PMC
March 2009

Determining gene expression on a single pair of microarrays.

BMC Bioinformatics 2008 Nov 21;9:489. Epub 2008 Nov 21.

Department of Bioinformatics and Genomics, The University of North Carolina at Charlotte, 9201 University City Boulevard, Charlotte, NC 28223, USA.

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http://dx.doi.org/10.1186/1471-2105-9-489DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2605475PMC
November 2008

Background correction using dinucleotide affinities improves the performance of GCRMA.

BMC Bioinformatics 2008 Oct 23;9:452. Epub 2008 Oct 23.

Department of Bioinformatics and Genomics, University of North Carolina at Charlotte, Charlotte, NC 28223, USA.

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http://dx.doi.org/10.1186/1471-2105-9-452DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2579310PMC
October 2008

Towards the uniform distribution of null P values on Affymetrix microarrays.

Genome Biol 2007 ;8(5):R69

Bioinformatics Resource Center, The University of North Carolina at Charlotte, University City Boulevard, Charlotte, North Carolina 28223, USA.

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http://dx.doi.org/10.1186/gb-2007-8-5-r69DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1929139PMC
September 2007

Software note: using probe secondary structure information to enhance Affymetrix GeneChip background estimates.

Comput Biol Chem 2007 Apr 20;31(2):92-8. Epub 2007 Feb 20.

Bioinformatics Research Center, University of North Carolina at Charlotte, 9201 University City Blvd., Charlotte, NC 28223, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S147692710700029
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http://dx.doi.org/10.1016/j.compbiolchem.2007.02.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2043163PMC
April 2007

Cochlear function in mice lacking the BK channel alpha, beta1, or beta4 subunits.

J Biol Chem 2007 Feb 29;282(5):3312-24. Epub 2006 Nov 29.

Department of Otolaryngology Head and Neck Surgery, The Johns Hopkins School of Medicine, Baltimore, Maryland 21205, USA.

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http://dx.doi.org/10.1074/jbc.M608726200DOI Listing
February 2007

BK calcium-activated potassium channels regulate circadian behavioral rhythms and pacemaker output.

Nat Neurosci 2006 Aug 16;9(8):1041-9. Epub 2006 Jul 16.

Department of Molecular and Cellular Physiology and Howard Hughes Medical Institute, Stanford University, Stanford, California 94305, USA.

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http://dx.doi.org/10.1038/nn1740DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2909323PMC
August 2006

Statistical limits to the identification of ion channel domains by sequence similarity.

J Gen Physiol 2006 Jun;127(6):755-66

Department of Molecular and Cellular Physiology, Howard Hughes Medical Institute, Stanford University School of Medicine, CA 94305, USA.

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http://dx.doi.org/10.1085/jgp.200509419DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2151544PMC
June 2006

Influence of conservation on calculations of amino acid covariance in multiple sequence alignments.

Proteins 2004 Aug;56(2):211-21

Department of Molecular and Cellular Physiology, and Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, California 94305-5345, USA.

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http://dx.doi.org/10.1002/prot.20098DOI Listing
August 2004

A perturbation-based method for calculating explicit likelihood of evolutionary co-variance in multiple sequence alignments.

Bioinformatics 2004 Jul 12;20(10):1565-72. Epub 2004 Feb 12.

Department of Neurobiology, Harvard Medical School, 220 Longwood Avenue, Boston, MA 02115, USA.

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http://dx.doi.org/10.1093/bioinformatics/bth128DOI Listing
July 2004

On evolutionary conservation of thermodynamic coupling in proteins.

J Biol Chem 2004 Apr 15;279(18):19046-50. Epub 2004 Mar 15.

Department of Molecular and Cellular Physiology, and Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, California 94305-5345, USA.

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http://dx.doi.org/10.1074/jbc.M402560200DOI Listing
April 2004