Publications by authors named "Anoop Mayampurath"

35Publications

Predictors of pressure injury development in critically ill adults: A retrospective cohort study.

Intensive Crit Care Nurs 2020 Aug 25:102924. Epub 2020 Aug 25.

The University of Chicago Medicine, United States; Rush University Medical Center, United States. Electronic address:

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http://dx.doi.org/10.1016/j.iccn.2020.102924DOI Listing
August 2020

Abnormal vital signs after laparoscopic colorectal surgery: More common than you think.

Am J Surg 2020 Aug 15. Epub 2020 Aug 15.

Division of Colon and Rectal Surgery, University of Chicago, Chicago, IL, USA. Electronic address:

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http://dx.doi.org/10.1016/j.amjsurg.2020.08.009DOI Listing
August 2020

Combining patient visual timelines with deep learning to predict mortality.

PLoS One 2019 31;14(7):e0220640. Epub 2019 Jul 31.

Department of Medicine, University of Chicago, Chicago, IL, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0220640PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6668841PMC
March 2020

Using photoplethysmography data to estimate heart rate variability and its association with organ dysfunction in pediatric oncology patients.

NPJ Digit Med 2018 25;1:29. Epub 2018 Jul 25.

3Division of Critical Care Medicine, Ann & Robert H. Lurie Children's Hospital of Chicago, Chicago, IL USA.

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http://dx.doi.org/10.1038/s41746-018-0038-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6550162PMC
July 2018

Association Between Room Location and Adverse Outcomes in Hospitalized Patients.

HERD 2019 04 31;12(2):21-29. Epub 2018 Oct 31.

6 Department of Medicine, The University of Chicago, Chicago, IL, USA.

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http://dx.doi.org/10.1177/1937586718806702DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6520200PMC
April 2019

Whole-Proteome Analysis of Human Craniosynostotic Tissue Suggests a Link between Inflammatory Signaling and Osteoclast Activation in Human Cranial Suture Patency.

Plast Reconstr Surg 2018 02;141(2):250e-260e

Chicago, Ill.; and Los Angeles, Calif. From the University of Chicago Pritzker School of Medicine; the Computation Institute, Center for Research Informatics, University of Chicago; the Molecular Oncology Laboratory, Department of Orthopedic Surgery, Section of Neurosurgery, and the Laboratory of Craniofacial Development and Biology, Section of Plastic and Reconstructive Surgery, University of Chicago Medicine; and the Division of Plastic and Reconstructive Surgery, University of California, Los Angeles.

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http://dx.doi.org/10.1097/PRS.0000000000004025DOI Listing
February 2018

Plasma Biomarkers of Inflammation Reflect Seizures and Hemorrhagic Activity of Cerebral Cavernous Malformations.

Transl Stroke Res 2018 02 17;9(1):34-43. Epub 2017 Aug 17.

Neurovascular Surgery Program, Section of Neurosurgery, The University of Chicago Medicine and Biological Sciences, 5841 S. Maryland, MC3026/Neurosurgery J341, Chicago, IL, 60637, USA.

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http://dx.doi.org/10.1007/s12975-017-0561-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5750099PMC
February 2018

A method for whole protein isolation from human cranial bone.

Anal Biochem 2016 Dec 25;515:33-39. Epub 2016 Sep 25.

The Laboratory of Craniofacial Development and Biology, Section of Plastic and Reconstructive Surgery, University of Chicago Medicine, United States. Electronic address:

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http://dx.doi.org/10.1016/j.ab.2016.09.021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5584578PMC
December 2016

Automated Glycan Sequencing from Tandem Mass Spectra of N-Linked Glycopeptides.

Anal Chem 2016 06 23;88(11):5725-32. Epub 2016 May 23.

School of Informatics and Computing, Indiana University , 150 South Woodlawn Avenue, Bloomington, Indiana 47405, United States.

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http://dx.doi.org/10.1021/acs.analchem.5b04858DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4899231PMC
June 2016

The quantitative changes in the yeast Hsp70 and Hsp90 interactomes upon DNA damage.

Data Brief 2015 Mar 7;2:12-5. Epub 2014 Nov 7.

Department of Molecular Genetics and Cell Biology, The University of Chicago, Chicago, IL 60637, USA.

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http://dx.doi.org/10.1016/j.dib.2014.10.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4459869PMC
March 2015

Glycoproteomics: identifying the glycosylation of prostate specific antigen at normal and high isoelectric points by LC-MS/MS.

J Proteome Res 2014 Dec 10;13(12):5570-80. Epub 2014 Nov 10.

Department of Chemistry and Biochemistry, Texas Tech University , Lubbock, Texas 79409, United States.

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http://dx.doi.org/10.1021/pr500575rDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4261947PMC
December 2014

Label-free glycopeptide quantification for biomarker discovery in human sera.

J Proteome Res 2014 Nov 7;13(11):4821-32. Epub 2014 Jul 7.

School of Informatics & Computing, Indiana University , 901 East 10th Street, Bloomington, Indiana 47408, United States.

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http://dx.doi.org/10.1021/pr500242mDOI Listing
November 2014

Bioinformatics protocols in glycomics and glycoproteomics.

Curr Protoc Protein Sci 2014 Apr 1;76:2.15.1-2.15.7. Epub 2014 Apr 1.

Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas.

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http://dx.doi.org/10.1002/0471140864.ps0215s76DOI Listing
April 2014

Computational framework for identification of intact glycopeptides in complex samples.

Anal Chem 2014 Jan 10;86(1):453-63. Epub 2013 Dec 10.

School of Informatics & Computing, Indiana University , Bloomington, Indiana 47408, United States.

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http://dx.doi.org/10.1021/ac402338uDOI Listing
January 2014

Automated annotation and quantification of glycans using liquid chromatography-mass spectrometry.

Bioinformatics 2013 Jul 22;29(13):1706-7. Epub 2013 Apr 22.

School of Informatics and Computing, Indiana University, Bloomington, IN 47408, USA.

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http://dx.doi.org/10.1093/bioinformatics/btt190DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4542666PMC
July 2013

Software tools for glycan profiling.

Methods Mol Biol 2013 ;951:269-76

School of Informatics and Computing, Indiana University, Bloomington, IN, USA.

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http://dx.doi.org/10.1007/978-1-62703-146-2_18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3861397PMC
June 2013

Improving confidence in detection and characterization of protein N-glycosylation sites and microheterogeneity.

Rapid Commun Mass Spectrom 2011 Jul;25(14):2007-19

School of Informatics & Computing, Indiana University, Bloomington, IN 4708, USA.

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http://dx.doi.org/10.1002/rcm.5059DOI Listing
July 2011

An efficient data format for mass spectrometry-based proteomics.

J Am Soc Mass Spectrom 2010 Oct 7;21(10):1784-8. Epub 2010 Jul 7.

Fundamental and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99352, USA.

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http://dx.doi.org/10.1016/j.jasms.2010.06.014DOI Listing
October 2010

Machine learning based prediction for peptide drift times in ion mobility spectrometry.

Bioinformatics 2010 Jul 21;26(13):1601-7. Epub 2010 May 21.

Fundamental and Computational Sciences Directorate, Pacific Northwest National Laboratory, 999 Battelle Boulevard, Richland, WA 99352, USA.

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http://dx.doi.org/10.1093/bioinformatics/btq245DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913656PMC
July 2010

Mapping site-specific protein N-glycosylations through liquid chromatography/mass spectrometry and targeted tandem mass spectrometry.

Rapid Commun Mass Spectrom 2010 Apr;24(7):965-72

School of Informatics and Computing, Indiana University, Bloomington, IN 47408, USA.

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http://doi.wiley.com/10.1002/rcm.4474
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http://dx.doi.org/10.1002/rcm.4474DOI Listing
April 2010

Functional and evolutionary insights from the genomes of three parasitoid Nasonia species.

Authors:
John H Werren Stephen Richards Christopher A Desjardins Oliver Niehuis Jürgen Gadau John K Colbourne John H Werren Stephen Richards Christopher A Desjardins Oliver Niehuis Jürgen Gadau John K Colbourne Leo W Beukeboom Claude Desplan Christine G Elsik Cornelis J P Grimmelikhuijzen Paul Kitts Jeremy A Lynch Terence Murphy Deodoro C S G Oliveira Christopher D Smith Louis van de Zande Kim C Worley Evgeny M Zdobnov Maarten Aerts Stefan Albert Victor H Anaya Juan M Anzola Angel R Barchuk Susanta K Behura Agata N Bera May R Berenbaum Rinaldo C Bertossa Márcia M G Bitondi Seth R Bordenstein Peer Bork Erich Bornberg-Bauer Marleen Brunain Giuseppe Cazzamali Lesley Chaboub Joseph Chacko Dean Chavez Christopher P Childers Jeong-Hyeon Choi Michael E Clark Charles Claudianos Rochelle A Clinton Andrew G Cree Alexandre S Cristino Phat M Dang Alistair C Darby Dirk C de Graaf Bart Devreese Huyen H Dinh Rachel Edwards Navin Elango Eran Elhaik Olga Ermolaeva Jay D Evans Sylvain Foret Gerald R Fowler Daniel Gerlach Joshua D Gibson Donald G Gilbert Dan Graur Stefan Gründer Darren E Hagen Yi Han Frank Hauser Da Hultmark Henry C Hunter Gregory D D Hurst Shalini N Jhangian Huaiyang Jiang Reed M Johnson Andrew K Jones Thomas Junier Tatsuhiko Kadowaki Albert Kamping Yuri Kapustin Bobak Kechavarzi Jaebum Kim Jay Kim Boris Kiryutin Tosca Koevoets Christie L Kovar Evgenia V Kriventseva Robert Kucharski Heewook Lee Sandra L Lee Kristin Lees Lora R Lewis David W Loehlin John M Logsdon Jacqueline A Lopez Ryan J Lozado Donna Maglott Ryszard Maleszka Anoop Mayampurath Danielle J Mazur Marcella A McClure Andrew D Moore Margaret B Morgan Jean Muller Monica C Munoz-Torres Donna M Muzny Lynne V Nazareth Susanne Neupert Ngoc B Nguyen Francis M F Nunes John G Oakeshott Geoffrey O Okwuonu Bart A Pannebakker Vikas R Pejaver Zuogang Peng Stephen C Pratt Reinhard Predel Ling-Ling Pu Hilary Ranson Rhitoban Raychoudhury Andreas Rechtsteiner Justin T Reese Jeffrey G Reid Megan Riddle Hugh M Robertson Jeanne Romero-Severson Miriam Rosenberg Timothy B Sackton David B Sattelle Helge Schlüns Thomas Schmitt Martina Schneider Andreas Schüler Andrew M Schurko David M Shuker Zilá L P Simões Saurabh Sinha Zachary Smith Victor Solovyev Alexandre Souvorov Andreas Springauf Elisabeth Stafflinger Deborah E Stage Mario Stanke Yoshiaki Tanaka Arndt Telschow Carol Trent Selina Vattathil Eveline C Verhulst Lumi Viljakainen Kevin W Wanner Robert M Waterhouse James B Whitfield Timothy E Wilkes Michael Williamson Judith H Willis Florian Wolschin Stefan Wyder Takuji Yamada Soojin V Yi Courtney N Zecher Lan Zhang Richard A Gibbs

DtaRefinery, a software tool for elimination of systematic errors from parent ion mass measurements in tandem mass spectra data sets.

Mol Cell Proteomics 2010 Mar 17;9(3):486-96. Epub 2009 Dec 17.

Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington 99352, USA.

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http://dx.doi.org/10.1074/mcp.M900217-MCP200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2849711PMC
March 2010

An LC-IMS-MS platform providing increased dynamic range for high-throughput proteomic studies.

J Proteome Res 2010 Feb;9(2):997-1006

Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington 99352, USA.

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http://dx.doi.org/10.1021/pr900888bDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2819092PMC
February 2010

Rapid sample processing for LC-MS-based quantitative proteomics using high intensity focused ultrasound.

J Proteome Res 2008 Sep 8;7(9):3860-7. Epub 2008 Aug 8.

Biological Science Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington 99352, USA.

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http://pubs.acs.org/doi/abs/10.1021/pr800161x
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http://dx.doi.org/10.1021/pr800161xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2744207PMC
September 2008

Proteomic profiling of intact proteins using WAX-RPLC 2-D separations and FTICR mass spectrometry.

J Proteome Res 2007 Feb;6(2):602-10

Pacific Northwest National Laboratory, Richland, WA 99352, USA.

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http://dx.doi.org/10.1021/pr060354aDOI Listing
February 2007