Anne Cori

Anne Cori

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Anne Cori

Anne Cori

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Real-time Epidemic Forecasting: Challenges and Opportunities.

Health Secur 2019 Jul/Aug;17(4):268-275

Britta Lassmann, MD, is Program Director, International Society for Infectious Diseases, Boston, MA.

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http://dx.doi.org/10.1089/hs.2019.0022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6708259PMC
August 2020

Outbreak analytics: a developing data science for informing the response to emerging pathogens.

Philos Trans R Soc Lond B Biol Sci 2019 Jul;374(1776):20180276

4 Department of Infectious Disease Epidemiology, School of Public Health, MRC Centre for Global Infectious Disease Analysis, Imperial College London , Medical School Building, St Mary's Campus, Norfolk Place London W2 1PG , UK.

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http://dx.doi.org/10.1098/rstb.2018.0276DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6558557PMC
July 2019

Bayesian inference of transmission chains using timing of symptoms, pathogen genomes and contact data.

PLoS Comput Biol 2019 03 29;15(3):e1006930. Epub 2019 Mar 29.

MRC Centre for Global Infectious Disease Analysis, Department of Infectious Disease Epidemiology, School of Public Health, Imperial College London, United Kingdom.

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http://dx.doi.org/10.1371/journal.pcbi.1006930DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6457559PMC
March 2019

A graph-based evidence synthesis approach to detecting outbreak clusters: An application to dog rabies.

PLoS Comput Biol 2018 12 17;14(12):e1006554. Epub 2018 Dec 17.

MRC Centre for Outbreak Analysis and Modelling, Department of Infectious Disease Epidemiology, School of Public Health, Imperial College London, London, United Kingdom.

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http://dx.doi.org/10.1371/journal.pcbi.1006554DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6312344PMC
December 2018

outbreaker2: a modular platform for outbreak reconstruction.

BMC Bioinformatics 2018 Oct 22;19(Suppl 11):363. Epub 2018 Oct 22.

MRC Centre for Outbreak Analysis and Modelling, Department of Infectious Disease Epidemiology, School of Public Health, Imperial College London, London, UK.

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http://dx.doi.org/10.1186/s12859-018-2330-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6196407PMC
October 2018

A simple approach to measure transmissibility and forecast incidence.

Epidemics 2018 03 24;22:29-35. Epub 2017 Feb 24.

MRC Centre for Outbreak Analysis and Modelling, Imperial College London, Faculty of Medicine, London, UK; National Institute for Health Research Health Protection Research Unit in Modelling Methodology, Imperial College London, Faculty of Medicine, London, UK. Electronic address:

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http://dx.doi.org/10.1016/j.epidem.2017.02.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5871640PMC
March 2018

When are pathogen genome sequences informative of transmission events?

PLoS Pathog 2018 02 8;14(2):e1006885. Epub 2018 Feb 8.

MRC Centre for Outbreak Analysis and Modelling, Department of Infectious Disease Epidemiology, School of Public Health, Imperial College London, London, United Kingdom.

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http://dx.doi.org/10.1371/journal.ppat.1006885DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5821398PMC
February 2018

How Can Viral Dynamics Models Inform Endpoint Measures in Clinical Trials of Therapies for Acute Viral Infections?

PLoS One 2016 1;11(7):e0158237. Epub 2016 Jul 1.

Department of Infectious Disease Epidemiology, School of Public Health, Imperial College London, London, United Kingdom.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0158237PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4930163PMC
August 2017

International risk of yellow fever spread from the ongoing outbreak in Brazil, December 2016 to May 2017.

Euro Surveill 2017 Jul;22(28)

MRC Centre for Outbreak analysis and Modelling, Department of Infectious Disease Epidemiology, Imperial College London, London, United Kingdom.

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http://dx.doi.org/10.2807/1560-7917.ES.2017.22.28.30572DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5545764PMC
July 2017

Key data for outbreak evaluation: building on the Ebola experience.

Philos Trans R Soc Lond B Biol Sci 2017 May;372(1721)

Medical Research Council Centre for Outbreak Analysis and Modelling, Department of Infectious Disease Epidemiology, School of Public Health, Imperial College London, London W2 1PG, UK.

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http://dx.doi.org/10.1098/rstb.2016.0371DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5394647PMC
May 2017

Evolution of HIV virulence in response to widespread scale up of antiretroviral therapy: a modeling study.

Virus Evol 2016 Jul 3;2(2):vew028. Epub 2016 Oct 3.

International Clinical Research Center, Department of Global Health, University of Washington, Seattle, WA 98104, USA.

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http://dx.doi.org/10.1093/ve/vew028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5822883PMC
July 2016

Potential Biases in Estimating Absolute and Relative Case-Fatality Risks during Outbreaks.

PLoS Negl Trop Dis 2015 16;9(7):e0003846. Epub 2015 Jul 16.

Center for Communicable Disease Dynamics, Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, Massachusetts, United States of America; Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, Massachusetts, United States of America.

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http://dx.doi.org/10.1371/journal.pntd.0003846DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4504518PMC
April 2016

Of germs and men.

Authors:
Anne Cori

Nat Microbiol 2016 02 24;1:16006. Epub 2016 Feb 24.

Imperial College London, Norfolk Place, London W2 1PG, UK.

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http://www.nature.com/articles/nmicrobiol20166
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http://dx.doi.org/10.1038/nmicrobiol.2016.6DOI Listing
February 2016

The role of rapid diagnostics in managing Ebola epidemics.

Nature 2015 Dec;528(7580):S109-16

MRC Centre for Outbreak Analysis and Modelling, Department of Infectious Disease Epidemiology, Faculty of Medicine, Imperial College London, Norfolk Place, London W2 1PG, UK.

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http://dx.doi.org/10.1038/nature16041DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4823022PMC
December 2015

Dispersion of the HIV-1 Epidemic in Men Who Have Sex with Men in the Netherlands: A Combined Mathematical Model and Phylogenetic Analysis.

PLoS Med 2015 Nov 3;12(11):e1001898; discussion e1001898. Epub 2015 Nov 3.

Medical Research Council Centre for Outbreak Analysis and Modelling, Department of Infectious Disease Epidemiology, School of Public Health, Imperial College London, London, United Kingdom.

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https://dx.plos.org/10.1371/journal.pmed.1001898
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http://dx.doi.org/10.1371/journal.pmed.1001898DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4631366PMC
November 2015

CD4+ cell dynamics in untreated HIV-1 infection: overall rates, and effects of age, viral load, sex and calendar time.

AIDS 2015 Nov;29(18):2435-46

aDepartment of Infectious Disease Epidemiology, School of Public Health, Imperial College London, London, UK bStichting HIV Monitoring, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1097/QAD.0000000000000854DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4645962PMC
November 2015

HIV treatment-as-prevention research: taking the right road at the crossroads.

PLoS Med 2015 Mar 10;12(3):e1001800. Epub 2015 Mar 10.

Columbia University, Mailman School of Public Health, New York, New York, United States of America.

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http://dx.doi.org/10.1371/journal.pmed.1001800DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4355412PMC
March 2015

Genome sequencing defines phylogeny and spread of methicillin-resistant Staphylococcus aureus in a high transmission setting.

Genome Res 2015 Jan 9;25(1):111-8. Epub 2014 Dec 9.

The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, United Kingdom; Cambridge University Hospitals NHS Foundation Trust, Cambridge CB2 0QQ, United Kingdom; Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Bangkok 10400, Thailand; Department of Medicine, University of Cambridge, Cambridge CB2 OXY, United Kingdom; Public Health England, Cambridge CB2 0QW, United Kingdom;

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http://dx.doi.org/10.1101/gr.174730.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4317166PMC
January 2015

Estimating HIV incidence from case-report data: method and an application in Colombia.

AIDS 2014 Nov;28 Suppl 4:S489-96

aDepartment of Infectious Disease Epidemiology, Imperial College London, London, UK bStichting HIV Monitoring, Amsterdam, the Netherlands.

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http://dx.doi.org/10.1097/QAD.0000000000000466DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4247266PMC
November 2014

Bayesian reconstruction of disease outbreaks by combining epidemiologic and genomic data.

PLoS Comput Biol 2014 Jan 23;10(1):e1003457. Epub 2014 Jan 23.

MRC Centre for Outbreak Analysis and Modelling, Department of Infectious Disease Epidemiology, School of Public Health, Imperial College London, London, United Kingdom.

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http://dx.doi.org/10.1371/journal.pcbi.1003457DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3900386PMC
January 2014

The potential effects of changing HIV treatment policy on tuberculosis outcomes in South Africa: results from three tuberculosis-HIV transmission models.

AIDS 2014 Jan;28 Suppl 1:S25-34

aFutures Institute, Glastonbury, Connecticut bCenter for Health Decision Science, Harvard School of Public Health cDepartment of Global Health and Population, Harvard School of Public Health dDivision of Global Health Equity, Brigham and Women's Hospital eDepartment of Epidemiology, Harvard School of Public Health, Boston, Massachusetts, USA fMRC Centre for Outbreak Analysis and Modelling, Department of Infectious Disease Epidemiology gDepartment of Infectious Disease Epidemiology, Imperial College London hDepartment of Infectious Disease Epidemiology, London School of Hygiene and Tropical Medicine, London, UK. *Carel Pretorius and Nicolas A. Menzies contributed equally to the writing of this article.

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http://dx.doi.org/10.1097/QAD.0000000000000085DOI Listing
January 2014

How effectively can HIV phylogenies be used to measure heritability?

Evol Med Public Health 2013 Jan 13;2013(1):209-24. Epub 2013 Sep 13.

Medical Research Council Centre for Outbreak Analysis and Modelling, Department of Infectious Disease Epidemiology, Imperial College, London, UK; Institute for Integrative Biology, ETH Zürich, Zürich, Switzerland; Lab MIVEGEC UMR CNRS 5290, IRD 224, UM1, UM2, Montpellier, France; Division of Infectious Diseases and Hospital Epidemiology, University Hospital of Zürich, University of Zürich, Zürich, Switzerland; National Institute of Allergy and Infectious Diseases, National Institutes of Health, Baltimore, MD, USA; Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA; and Stichting HIV Monitoring, Amsterdam, The Netherlands.

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https://academic.oup.com/emph/article-lookup/doi/10.1093/emp
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http://dx.doi.org/10.1093/emph/eot019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3850537PMC
January 2013

Transmission parameters of the A/H1N1 (2009) influenza virus pandemic: a review.

Influenza Other Respir Viruses 2011 Sep 31;5(5):306-16. Epub 2011 Mar 31.

Université Pierre et Marie Curie-Paris 6, UMR S 707, Paris, France.

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http://doi.wiley.com/10.1111/j.1750-2659.2011.00234.x
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http://dx.doi.org/10.1111/j.1750-2659.2011.00234.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4942041PMC
September 2011

Age distribution of cases and deaths during the 1889 influenza pandemic.

Vaccine 2011 Jul;29 Suppl 2:B6-B10

Institut National de la Santé et de la Recherche Médicale, U 707, F-75012 Paris, France.

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https://linkinghub.elsevier.com/retrieve/pii/S0264410X110028
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http://dx.doi.org/10.1016/j.vaccine.2011.02.050DOI Listing
July 2011

Transmissibility and geographic spread of the 1889 influenza pandemic.

Proc Natl Acad Sci U S A 2010 May 26;107(19):8778-81. Epub 2010 Apr 26.

Institut National de la Santé et de la Recherche Médicale, Paris, France.

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http://dx.doi.org/10.1073/pnas.1000886107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2889325PMC
May 2010