Anna-Sapfo Malaspinas

Anna-Sapfo Malaspinas

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Anna-Sapfo Malaspinas

Anna-Sapfo Malaspinas

Publications by authors named "Anna-Sapfo Malaspinas"

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33Publications

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An Ancient Genome from the Indus Valley Civilization.

Cell 2019 Oct;179(3):586-588

Department of Computational Biology, University of Lausanne & Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2019.09.027DOI Listing
October 2019

In-solution Y-chromosome capture-enrichment on ancient DNA libraries.

BMC Genomics 2018 Aug 14;19(1):608. Epub 2018 Aug 14.

International Laboratory for Human Genome Research, National Autonomous University of Mexico, Mexico, Mexico.

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http://dx.doi.org/10.1186/s12864-018-4945-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6092841PMC
August 2018

Human bony labyrinth is an indicator of population history and dispersal from Africa.

Proc Natl Acad Sci U S A 2018 04 2;115(16):4128-4133. Epub 2018 Apr 2.

Department of Anthropology and Anthropological Museum, University of Zurich, CH-8057 Zurich, Switzerland;

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http://dx.doi.org/10.1073/pnas.1717873115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5910833PMC
April 2018

A genomic history of Aboriginal Australia.

Nature 2016 Oct 21;538(7624):207-214. Epub 2016 Sep 21.

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350 Copenhagen, Denmark.

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http://dx.doi.org/10.1038/nature18299DOI Listing
October 2016

Methods to characterize selective sweeps using time serial samples: an ancient DNA perspective.

Mol Ecol 2016 Jan;25(1):24-41

Institute of Ecology and Evolution, University of Bern, Baltzerstrasse 6, CH-3012, Bern, Switzerland.

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http://dx.doi.org/10.1111/mec.13492DOI Listing
January 2016

POPULATION GENETICS. Genomic evidence for the Pleistocene and recent population history of Native Americans.

Authors:
Maanasa Raghavan Matthias Steinrücken Kelley Harris Stephan Schiffels Simon Rasmussen Michael DeGiorgio Anders Albrechtsen Cristina Valdiosera María C Ávila-Arcos Anna-Sapfo Malaspinas Anders Eriksson Ida Moltke Mait Metspalu Julian R Homburger Jeff Wall Omar E Cornejo J Víctor Moreno-Mayar Thorfinn S Korneliussen Tracey Pierre Morten Rasmussen Paula F Campos Peter de Barros Damgaard Morten E Allentoft John Lindo Ene Metspalu Ricardo Rodríguez-Varela Josefina Mansilla Celeste Henrickson Andaine Seguin-Orlando Helena Malmström Thomas Stafford Suyash S Shringarpure Andrés Moreno-Estrada Monika Karmin Kristiina Tambets Anders Bergström Yali Xue Vera Warmuth Andrew D Friend Joy Singarayer Paul Valdes Francois Balloux Ilán Leboreiro Jose Luis Vera Hector Rangel-Villalobos Davide Pettener Donata Luiselli Loren G Davis Evelyne Heyer Christoph P E Zollikofer Marcia S Ponce de León Colin I Smith Vaughan Grimes Kelly-Anne Pike Michael Deal Benjamin T Fuller Bernardo Arriaza Vivien Standen Maria F Luz Francois Ricaut Niede Guidon Ludmila Osipova Mikhail I Voevoda Olga L Posukh Oleg Balanovsky Maria Lavryashina Yuri Bogunov Elza Khusnutdinova Marina Gubina Elena Balanovska Sardana Fedorova Sergey Litvinov Boris Malyarchuk Miroslava Derenko M J Mosher David Archer Jerome Cybulski Barbara Petzelt Joycelynn Mitchell Rosita Worl Paul J Norman Peter Parham Brian M Kemp Toomas Kivisild Chris Tyler-Smith Manjinder S Sandhu Michael Crawford Richard Villems David Glenn Smith Michael R Waters Ted Goebel John R Johnson Ripan S Malhi Mattias Jakobsson David J Meltzer Andrea Manica Richard Durbin Carlos D Bustamante Yun S Song Rasmus Nielsen Eske Willerslev

Science 2015 Aug 21;349(6250):aab3884. Epub 2015 Jul 21.

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350 Copenhagen, Denmark.

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http://dx.doi.org/10.1126/science.aab3884DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4733658PMC
August 2015

bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS).

Bioinformatics 2014 Oct 28;30(20):2962-4. Epub 2014 Jun 28.

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, 1350 Copenhagen K, Denmark, Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, Department of Biology, Pennsylvania State University, Wartik Laboratory, University Park, PA 16802, Centre for Theoretical Evolutionary Genomics, Departments of Integrative Biology and Statistics, University of California, Berkeley, CA 94720-3140, Ancestry.com DNA LLC, San Francisco, CA 94107, Department of Archaeology, Environment and Community Planning Faculty of Humanities and Social Sciences, La Trobe University, Melbourne, VIC 3086, Australia, INCUAPA-CONICET, Universidad del Centro de la Provincia de Buenos Aires, 7600 Olavarría, Argentina and Facultad de Ciencias Naturales y Museo de La Plata, 1900 La Plata, Argentina Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, 1350 Copenhagen K, Denmark, Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, Department of Biology, Pennsylvania State University, Wartik Laboratory, University Park, PA 16802, Centre for Theoretical Evolutionary Genomics, Departments of Integrative Biology and Statistics, University of California, Berkeley, CA 94720-3140, Ancestry.com DNA LLC, San Francisco, CA 94107, Department of Archaeology, Environment and Community Planning Faculty of Humanities and Social Sciences, La Trobe University, Melbourne, VIC 3086, Australia, INCUAPA-CONICET, Universidad del Centro de la Provincia de Buenos Aires, 7600 Olavarría, Argentina and Facultad de Ciencias Naturales y Museo de La Plata, 1900 La Plata, Argentina.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btu410DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4184259PMC
October 2014

Influenza virus drug resistance: a time-sampled population genetics perspective.

PLoS Genet 2014 Feb 27;10(2):e1004185. Epub 2014 Feb 27.

School of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland ; Swiss Institute of Bioinformatics (SIB), Lausanne, Switzerland.

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http://dx.doi.org/10.1371/journal.pgen.1004185DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3937227PMC
February 2014

Ancient structure in Africa unlikely to explain Neanderthal and non-African genetic similarity.

Mol Biol Evol 2012 Oct 18;29(10):2987-95. Epub 2012 Apr 18.

Department of Integrative Biology, University of California, Berkeley.

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http://dx.doi.org/10.1093/molbev/mss117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3457770PMC
October 2012

Estimating allele age and selection coefficient from time-serial data.

Genetics 2012 Oct 30;192(2):599-607. Epub 2012 Jul 30.

Centre for Geogenetics, Natural History Museum of Denmark, University of Copenhagen, 1350 Copenhagen, Denmark.

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http://dx.doi.org/10.1534/genetics.112.140939DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3454883PMC
October 2012

Match probabilities in a finite, subdivided population.

Theor Popul Biol 2011 May 23;79(3):55-63. Epub 2011 Jan 23.

Department of Integrative Biology, University of California, Berkeley, CA 94720, USA.

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http://dx.doi.org/10.1016/j.tpb.2011.01.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3065509PMC
May 2011

Parametric analysis of alignment and phylogenetic uncertainty.

Bull Math Biol 2011 Apr 16;73(4):795-810. Epub 2011 Mar 16.

Department of Integrative Biology, University of California at Berkeley, CA 94720-3140, USA.

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http://dx.doi.org/10.1007/s11538-010-9610-8DOI Listing
April 2011