Publications by authors named "Anis Karimpour-Fard"

40Publications

Circulating microRNAs differentiate Kawasaki Disease from infectious febrile illnesses in childhood.

J Mol Cell Cardiol 2020 Sep 4;146:12-18. Epub 2020 Jul 4.

Pediatric Cardiology, Children's Hospital Colorado, University of Colorado School of Medicine, Aurora, CO, USA.

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http://dx.doi.org/10.1016/j.yjmcc.2020.06.011DOI Listing
September 2020

MicroRNA regulation postbleomycin due to the R213G extracellular superoxide dismutase variant is predicted to suppress inflammatory and immune pathways.

Physiol Genomics 2020 06 18;52(6):245-254. Epub 2020 May 18.

Developmental Lung Biology and Cardiovascular Pulmonary Research Laboratories, Departments of Pediatrics and Medicine, University of Colorado, Anschutz Medical Campus, Aurora, C Colorado.

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http://dx.doi.org/10.1152/physiolgenomics.00116.2019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7311677PMC
June 2020

Analysis of Keloid Response to 5-Fluorouracil Treatment and Long-Term Prevention of Keloid Recurrence.

Plast Reconstr Surg 2019 02;143(2):490-494

Dallas, Texas; and Aurora, Colo. From the Departments of Cell Biology and Plastic Surgery, University of Texas Southwestern Medical Center; and the Division of Plastic Surgery, University of Colorado.

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http://dx.doi.org/10.1097/PRS.0000000000005257DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6349497PMC
February 2019

Origins of Intraindividual Genetic Variation in Human Fetuses.

Reprod Sci 2019 08 19;26(8):1139-1145. Epub 2018 Nov 19.

3 Department of Embryology, Reproductive Biomedicine Research Centre, Royan Institute for Reproductive Biomedicine, ACECR, Tehran, Iran.

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http://dx.doi.org/10.1177/1933719118808919DOI Listing
August 2019

Phosphodiesterase-5 Is Elevated in Failing Single Ventricle Myocardium and Affects Cardiomyocyte Remodeling In Vitro.

Circ Heart Fail 2018 09;11(9):e004571

Division of Cardiology, Department of Pediatrics, University of Colorado Anschutz Medical Campus, Children's Hospital Colorado, Aurora (A.M.G., S.J.N., S.D.M.).

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http://dx.doi.org/10.1161/CIRCHEARTFAILURE.117.004571DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6206883PMC
September 2018

R213G polymorphism in SOD3 protects against bleomycin-induced inflammation and attenuates induction of proinflammatory pathways.

Physiol Genomics 2018 09 13;50(9):807-816. Epub 2018 Jul 13.

Developmental Lung Biology and Cardiovascular Pulmonary Research Laboratories, Departments of Pediatrics and Medicine, University of Colorado, Anschutz Medical Campus, Aurora, Colorado.

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http://dx.doi.org/10.1152/physiolgenomics.00053.2018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6172610PMC
September 2018

Elevated serum vascular endothelial growth factor and development of cardiac allograft vasculopathy in children.

J Heart Lung Transplant 2018 09 30;37(9):1075-1082. Epub 2018 Apr 30.

Division of Cardiology, Department of Pediatrics, University of Colorado School of Medicine and Children's Hospital Colorado, Aurora, Colorado, USA. Electronic address:

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http://dx.doi.org/10.1016/j.healun.2018.04.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6261433PMC
September 2018

Improved Detection of Circulating miRNAs in Serum and Plasma Following Rapid Heat/Freeze Cycling.

Microrna 2018 ;7(2):138-147

Department of Medicine, Division of Cardiology, University of Colorado Denver, Anschutz Medical Campus, Aurora, CO 80045, United States.

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http://dx.doi.org/10.2174/2211536607666180416152112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6198569PMC
November 2018

Amino acids in a targeted versus a non-targeted metabolomics LC-MS/MS assay. Are the results consistent?

Clin Biochem 2016 Sep 8;49(13-14):955-61. Epub 2016 Jun 8.

iC42 Clinical Research and Development, University of Colorado Anschutz Medical Campus, Aurora, CO, United States.

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http://dx.doi.org/10.1016/j.clinbiochem.2016.06.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6047903PMC
September 2016

A survey of computational tools for downstream analysis of proteomic and other omic datasets.

Hum Genomics 2015 Oct 28;9:28. Epub 2015 Oct 28.

Department of Pharmacology, University of Colorado School of Medicine, Aurora, CO, 80045, USA.

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http://dx.doi.org/10.1186/s40246-015-0050-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4624643PMC
October 2015

Micro-RNA expression in hypoplastic left heart syndrome.

J Card Fail 2015 Jan 5;21(1):83-8. Epub 2014 Oct 5.

Department of Pediatrics, University of Colorado School of Medicine, Children's Hospital Colorado, Aurora, Colorado. Electronic address:

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http://dx.doi.org/10.1016/j.cardfail.2014.09.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4276459PMC
January 2015

Gibbon genome and the fast karyotype evolution of small apes.

Nature 2014 Sep;513(7517):195-201

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1038/nature13679DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4249732PMC
September 2014

Metabolic changes associated with the long winter fast dominate the liver proteome in 13-lined ground squirrels.

Physiol Genomics 2014 May 18;46(10):348-61. Epub 2014 Mar 18.

Department of Cell and Developmental Biology, University of Colorado School of Medicine, Aurora, Colorado; Human Medical Genetics and Genomics Program, University of Colorado School of Medicine, Aurora, Colorado; and

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http://www.physiology.org/doi/10.1152/physiolgenomics.00190.
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http://dx.doi.org/10.1152/physiolgenomics.00190.2013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4042184PMC
May 2014

A novel function of MUC18: amplification of lung inflammation during bacterial infection.

Am J Pathol 2013 Mar 17;182(3):819-27. Epub 2012 Dec 17.

Pulmonary Division, Department of Medicine, National Jewish Health, Denver, Colorado 80206, USA.

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http://dx.doi.org/10.1016/j.ajpath.2012.11.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3586690PMC
March 2013

Genome-scale identification and characterization of ethanol tolerance genes in Escherichia coli.

Metab Eng 2013 Jan 17;15:124-33. Epub 2012 Nov 17.

Department of Chemical and Biological Engineering, University of Colorado at Boulder, Jennie Smoly Caruthers Biotechnology Building, UCB 596, Boulder, CO 80309, USA.

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http://dx.doi.org/10.1016/j.ymben.2012.10.007DOI Listing
January 2013

Regional differences in subcutaneous adipose tissue gene expression.

Obesity (Silver Spring) 2012 Nov 4;20(11):2168-73. Epub 2012 May 4.

Division of Endocrinology, Metabolism and Diabetes, University of Colorado School of Medicine, Anschutz Medical Campus, Aurora, Colorado, USA.

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http://doi.wiley.com/10.1038/oby.2012.117
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http://dx.doi.org/10.1038/oby.2012.117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3434286PMC
November 2012

Temporal analysis of mRNA and miRNA expression in transgenic mice overexpressing Arg- and Gly389 polymorphic variants of the β1-adrenergic receptor.

Physiol Genomics 2011 Dec 27;43(23):1294-306. Epub 2011 Sep 27.

Division of Cardiology, Center for Computational Pharmacology, University of Colorado School of Medicine, Aurora, CO 80045, USA.

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http://dx.doi.org/10.1152/physiolgenomics.00067.2011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3233820PMC
December 2011

Multistate proteomics analysis reveals novel strategies used by a hibernator to precondition the heart and conserve ATP for winter heterothermy.

Physiol Genomics 2011 Nov 13;43(22):1263-75. Epub 2011 Sep 13.

Human Medical Genetics Program, Department of Cell and Developmental Biology, University of Colorado School of Medicine, Aurora, Colorado 80045, USA.

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http://www.physiology.org/doi/10.1152/physiolgenomics.00125.
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http://dx.doi.org/10.1152/physiolgenomics.00125.2011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3217319PMC
November 2011

Skeletal muscle proteomics: carbohydrate metabolism oscillates with seasonal and torpor-arousal physiology of hibernation.

Am J Physiol Regul Integr Comp Physiol 2011 Nov 24;301(5):R1440-52. Epub 2011 Aug 24.

Dept. of Cell and Developmental Biology, PO Box 6511, MS 8010, Univ. of Colorado School of Medicine, Anschutz Medical Campus, Aurora, CO 80045, USA.

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http://dx.doi.org/10.1152/ajpregu.00298.2011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3213940PMC
November 2011

Metabolic cycles in a circannual hibernator.

Physiol Genomics 2011 Jul 3;43(13):799-807. Epub 2011 May 3.

Department of Cell and Developmental Biology, University of Colorado School of Medicine, Aurora, Colorado, USA.

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http://www.physiology.org/doi/10.1152/physiolgenomics.00028.
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http://dx.doi.org/10.1152/physiolgenomics.00028.2011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3132838PMC
July 2011

A survey of analysis software for array-comparative genomic hybridisation studies to detect copy number variation.

Hum Genomics 2010 Aug;4(6):421-7

Center for Computational Pharmacology, University of Colorado School of Medicine, Aurora, CO 80045, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3525224PMC
http://dx.doi.org/10.1186/1479-7364-4-6-421DOI Listing
August 2010

Rapid profiling of a microbial genome using mixtures of barcoded oligonucleotides.

Nat Biotechnol 2010 Aug 18;28(8):856-62. Epub 2010 Jul 18.

Department of Chemical and Biological Engineering, University of Colorado, Boulder, Colorado, USA.

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http://dx.doi.org/10.1038/nbt.1653DOI Listing
August 2010

Increased mutation frequency in redox-impaired Escherichia coli due to RelA- and RpoS-mediated repression of DNA repair.

Appl Environ Microbiol 2010 Aug 25;76(16):5463-70. Epub 2010 Jun 25.

Department of Chemical and Biological Engineering, University of Colorado, UCB 424, Boulder, Colorado 80309, USA.

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http://dx.doi.org/10.1128/AEM.00583-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2918982PMC
August 2010

Predicting protein linkages in bacteria: which method is best depends on task.

BMC Bioinformatics 2008 Sep 24;9:397. Epub 2008 Sep 24.

Center for Computational Pharmacology, University of Colorado School of Medicine, Aurora, Colorado 80045, USA.

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http://dx.doi.org/10.1186/1471-2105-9-397DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2570368PMC
September 2008

The topology of the bacterial co-conserved protein network and its implications for predicting protein function.

BMC Genomics 2008 Jun 30;9:313. Epub 2008 Jun 30.

Center for Computational Pharmacology, University of Colorado School of Medicine, Aurora, Colorado 80045, USA.

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http://dx.doi.org/10.1186/1471-2164-9-313DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2488357PMC
June 2008

Investigation of factors affecting prediction of protein-protein interaction networks by phylogenetic profiling.

BMC Genomics 2007 Oct 29;8:393. Epub 2007 Oct 29.

Center for Computational Pharmacology, University of Colorado School of Medicine, Aurora, Colorado 80045, USA.

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http://dx.doi.org/10.1186/1471-2164-8-393DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2204017PMC
October 2007

Cross-species cluster co-conservation: a new method for generating protein interaction networks.

Genome Biol 2007 ;8(9):R185

Center for Computational Pharmacology, University of Colorado School of Medicine, Aurora, Colorado 80045, USA.

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http://dx.doi.org/10.1186/gb-2007-8-9-r185DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2375023PMC
May 2008

Gene copy number variation spanning 60 million years of human and primate evolution.

Genome Res 2007 Sep 31;17(9):1266-77. Epub 2007 Jul 31.

Human Medical Genetics Program, University of Colorado at Denver and Health Sciences Center, Aurora, Colorado 80045, USA

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http://dx.doi.org/10.1101/gr.6557307DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1950895PMC
September 2007

Evolutionary and biomedical insights from the rhesus macaque genome.

Authors:
Richard A Gibbs Jeffrey Rogers Michael G Katze Roger Bumgarner George M Weinstock Elaine R Mardis Karin A Remington Robert L Strausberg J Craig Venter Richard K Wilson Mark A Batzer Carlos D Bustamante Evan E Eichler Matthew W Hahn Ross C Hardison Kateryna D Makova Webb Miller Aleksandar Milosavljevic Robert E Palermo Adam Siepel James M Sikela Tony Attaway Stephanie Bell Kelly E Bernard Christian J Buhay Mimi N Chandrabose Marvin Dao Clay Davis Kimberly D Delehaunty Yan Ding Huyen H Dinh Shannon Dugan-Rocha Lucinda A Fulton Ramatu Ayiesha Gabisi Toni T Garner Jennifer Godfrey Alicia C Hawes Judith Hernandez Sandra Hines Michael Holder Jennifer Hume Shalini N Jhangiani Vandita Joshi Ziad Mohid Khan Ewen F Kirkness Andrew Cree R Gerald Fowler Sandra Lee Lora R Lewis Zhangwan Li Yih-Shin Liu Stephanie M Moore Donna Muzny Lynne V Nazareth Dinh Ngoc Ngo Geoffrey O Okwuonu Grace Pai David Parker Heidie A Paul Cynthia Pfannkoch Craig S Pohl Yu-Hui Rogers San Juana Ruiz Aniko Sabo Jireh Santibanez Brian W Schneider Scott M Smith Erica Sodergren Amanda F Svatek Teresa R Utterback Selina Vattathil Wesley Warren Courtney Sherell White Asif T Chinwalla Yucheng Feng Aaron L Halpern Ladeana W Hillier Xiaoqiu Huang Pat Minx Joanne O Nelson Kymberlie H Pepin Xiang Qin Granger G Sutton Eli Venter Brian P Walenz John W Wallis Kim C Worley Shiaw-Pyng Yang Steven M Jones Marco A Marra Mariano Rocchi Jacqueline E Schein Robert Baertsch Laura Clarke Miklós Csürös Jarret Glasscock R Alan Harris Paul Havlak Andrew R Jackson Huaiyang Jiang Yue Liu David N Messina Yufeng Shen Henry Xing-Zhi Song Todd Wylie Lan Zhang Ewan Birney Kyudong Han Miriam K Konkel Jungnam Lee Arian F A Smit Brygg Ullmer Hui Wang Jinchuan Xing Richard Burhans Ze Cheng John E Karro Jian Ma Brian Raney Xinwei She Michael J Cox Jeffery P Demuth Laura J Dumas Sang-Gook Han Janet Hopkins Anis Karimpour-Fard Young H Kim Jonathan R Pollack Tomas Vinar Charles Addo-Quaye Jeremiah Degenhardt Alexandra Denby Melissa J Hubisz Amit Indap Carolin Kosiol Bruce T Lahn Heather A Lawson Alison Marklein Rasmus Nielsen Eric J Vallender Andrew G Clark Betsy Ferguson Ryan D Hernandez Kashif Hirani Hildegard Kehrer-Sawatzki Jessica Kolb Shobha Patil Ling-Ling Pu Yanru Ren David Glenn Smith David A Wheeler Ian Schenck Edward V Ball Rui Chen David N Cooper Belinda Giardine Fan Hsu W James Kent Arthur Lesk David L Nelson William E O'brien Kay Prüfer Peter D Stenson James C Wallace Hui Ke Xiao-Ming Liu Peng Wang Andy Peng Xiang Fan Yang Galt P Barber David Haussler Donna Karolchik Andy D Kern Robert M Kuhn Kayla E Smith Ann S Zwieg

Science 2007 Apr;316(5822):222-34

Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA.

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http://dx.doi.org/10.1126/science.1139247DOI Listing
April 2007

A comparison of alternative 60-mer probe designs in an in-situ synthesized oligonucleotide microarray.

BMC Genomics 2006 Apr 4;7:72. Epub 2006 Apr 4.

Chemical and Biological Engineering, University of Colorado, Boulder, Colorado, USA.

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http://dx.doi.org/10.1186/1471-2164-7-72DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1468409PMC
April 2006