Publications by authors named "Angela H DePace"

27Publications

Quantitative Comparison of the Anterior-Posterior Patterning System in the Embryos of Five Species.

G3 (Bethesda) 2019 07 9;9(7):2171-2182. Epub 2019 Jul 9.

Department of Systems Biology, Harvard Medical School, Boston, MA, 20115.

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http://dx.doi.org/10.1534/g3.118.200953DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6643877PMC
July 2019

Signal Integration by Shadow Enhancers and Enhancer Duplications Varies across the Drosophila Embryo.

Cell Rep 2019 02;26(9):2407-2418.e5

Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2019.01.115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6597254PMC
February 2019

Analysis of Genetic Variation Indicates DNA Shape Involvement in Purifying Selection.

Mol Biol Evol 2018 08;35(8):1958-1967

Molecular and Computational Biology Program, Department of Biological Sciences, University of Southern California, Los Angeles, CA.

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http://dx.doi.org/10.1093/molbev/msy099DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6063282PMC
August 2018

Transcriptional precision and accuracy in development: from measurements to models and mechanisms.

Development 2017 11;144(21):3855-3866

Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA

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http://dx.doi.org/10.1242/dev.146563DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5702068PMC
November 2017

Combinatorial Gene Regulation through Kinetic Control of the Transcription Cycle.

Cell Syst 2017 01 29;4(1):97-108.e9. Epub 2016 Dec 29.

The Rowland Institute at Harvard, Harvard University, Cambridge, MA 02142, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cels.2016.11.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5469051PMC
January 2017

SiteOut: An Online Tool to Design Binding Site-Free DNA Sequences.

PLoS One 2016 17;11(3):e0151740. Epub 2016 Mar 17.

Department of Systems Biology, Harvard Medical School, Boston, MA, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0151740PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4795680PMC
July 2016

The appeasement of Doug: a synthetic approach to enhancer biology.

Integr Biol (Camb) 2016 Apr 3;8(4):475-84. Epub 2016 Mar 3.

Department of Systems Biology, Harvard Medical School, 200 Longwood Avenue, Boston, MA 02115, USA.

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http://dx.doi.org/10.1039/c5ib00321kDOI Listing
April 2016

Krüppel Expression Levels Are Maintained through Compensatory Evolution of Shadow Enhancers.

Cell Rep 2015 Sep 3;12(11):1740-7. Epub 2015 Sep 3.

Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2015.08.021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4581983PMC
September 2015

Yearly planning meetings: individualized development plans aren't just more paperwork.

Mol Cell 2015 Jun;58(5):718-21

Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2015.04.025DOI Listing
June 2015

Shadow enhancers enable Hunchback bifunctionality in the Drosophila embryo.

Proc Natl Acad Sci U S A 2015 Jan 6;112(3):785-90. Epub 2015 Jan 6.

Department of Systems Biology, Harvard Medical School, Boston, MA 02115

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http://dx.doi.org/10.1073/pnas.1413877112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4311800PMC
January 2015

Comparing mRNA levels using in situ hybridization of a target gene and co-stain.

Methods 2014 Jun 13;68(1):233-41. Epub 2014 Jan 13.

Department of Systems Biology, Harvard Medical School, 200 Longwood Ave., Boston, MA 02115, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ymeth.2014.01.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4048779PMC
June 2014

Modeling transcriptional networks in Drosophila development at multiple scales.

Curr Opin Genet Dev 2011 Dec 1;21(6):711-8. Epub 2011 Sep 1.

Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA.

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http://dx.doi.org/10.1016/j.gde.2011.07.005DOI Listing
December 2011

Emerging principles of conformation-based prion inheritance.

Annu Rev Biochem 2004 ;73:617-56

Graduate Group in Biophysics, Howard Hughes Medical Institute, Department of Cellular and Molecular Pharmacology, University of California, San Francisco, California 94107-2240, USA.

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http://dx.doi.org/10.1146/annurev.biochem.72.121801.161837DOI Listing
October 2004

Generation of prion transmission barriers by mutational control of amyloid conformations.

Nature 2003 Aug;424(6951):948-51

Graduate Group in Biophysics, University of California-San Francisco, San Francisco, California 94143-2240, USA.

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http://dx.doi.org/10.1038/nature01894DOI Listing
August 2003

Origins and kinetic consequences of diversity in Sup35 yeast prion fibers.

Nat Struct Biol 2002 May;9(5):389-96

Howard Hughes Medical Institute and Department of Cellular Pharmacology, University of California San Francisco, 513 Parnassus Avenue, San Francisco, California, 94143-0450, USA.

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http://dx.doi.org/10.1038/nsb786DOI Listing
May 2002