Andrey A Shabalin

Andrey A Shabalin

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Andrey A Shabalin

Andrey A Shabalin

Publications by authors named "Andrey A Shabalin"

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32Publications

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A methylation study of long-term depression risk.

Mol Psychiatry 2019 Sep 9. Epub 2019 Sep 9.

Center for Biomarker Research and Precision Medicine, Virginia Commonwealth University, Richmond, VA, USA.

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http://dx.doi.org/10.1038/s41380-019-0516-zDOI Listing
September 2019

Polygenic risk scoring and prediction of mental health outcomes.

Curr Opin Psychol 2019 Jun 20;27:77-81. Epub 2018 Sep 20.

Department of Psychiatry, University of Utah School of Medicine, 201 President's Circle, Salt Lake City, UT 8412, USA; Virginia Institute for Psychiatric & Behavioral Genetics, Virginia Commonwealth University School of Medicine, 800 E. Leigh St., Biotech One Suite 100, Richmond, VA 23219, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S2352250X183010
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http://dx.doi.org/10.1016/j.copsyc.2018.09.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6426686PMC
June 2019

Independent Methylome-Wide Association Studies of Schizophrenia Detect Consistent Case-Control Differences.

Schizophr Bull 2019 Jun 5. Epub 2019 Jun 5.

Center for Biomarker Research and Precision Medicine, School of Pharmacy, Virginia Commonwealth University, Richmond, VA.

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http://dx.doi.org/10.1093/schbul/sbz056DOI Listing
June 2019

Epigenetic Aging in Major Depressive Disorder.

Am J Psychiatry 2018 08 16;175(8):774-782. Epub 2018 Apr 16.

From the Department of Psychiatry, VU University Medical Center, Amsterdam Neuroscience, GGZ inGeest, the Amsterdam Public Health Research Institute, Amsterdam; the Center for Biomarker Research and Precision Medicine, School of Pharmacy, Virginia Commonwealth University, Richmond; the Molecular Psychiatry Laboratory, Florey Department of Neuroscience and Mental Health, Melbourne, Australia; and the Centre for Mental Health, Faculty of Health, Arts, and Design, Swinburne University, Hawthorne, Australia.

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http://dx.doi.org/10.1176/appi.ajp.2018.17060595DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6094380PMC
August 2018

An empirical Bayes approach for multiple tissue eQTL analysis.

Biostatistics 2018 07;19(3):391-406

Department of Statistics and Operations Research, University of North Carolina at Chapel Hill, 318 E Cameron Ave, Chapel Hill, NC, 27599 USA.

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http://dx.doi.org/10.1093/biostatistics/kxx048DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6366007PMC
July 2018

Methyl-CpG-Binding Domain Sequencing: MBD-seq.

Methods Mol Biol 2018 ;1708:171-189

Center for Biomarker Research and Precision Medicine, Virginia Commonwealth University, P. O. Box 980533, Richmond, VA, 23298, USA.

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http://dx.doi.org/10.1007/978-1-4939-7481-8_10DOI Listing
July 2018

RaMWAS: fast methylome-wide association study pipeline for enrichment platforms.

Bioinformatics 2018 07;34(13):2283-2285

Center for Biomarker Research and Precision Medicine, Virginia Commonwealth University, Richmond, USA.

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http://dx.doi.org/10.1093/bioinformatics/bty069DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6022807PMC
July 2018

A MBD-seq protocol for large-scale methylome-wide studies with (very) low amounts of DNA.

Epigenetics 2017 09 6;12(9):743-750. Epub 2017 Nov 6.

a Center for Biomarker Research and Precision Medicine , Virginia Commonwealth University , Richmond , VA , USA.

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http://dx.doi.org/10.1080/15592294.2017.1335849DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5739096PMC
September 2017

A Whole Methylome CpG-SNP Association Study of Psychosis in Blood and Brain Tissue.

Schizophr Bull 2016 07 9;42(4):1018-26. Epub 2015 Dec 9.

Center for Biomarker Research and Precision Medicine, Virginia Commonwealth University, Richmond, VA;

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http://dx.doi.org/10.1093/schbul/sbv182DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4903046PMC
July 2016

An integrated map of structural variation in 2,504 human genomes.

Nature 2015 Oct;526(7571):75-81

European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Meyerhofstr. 1, 69117 Heidelberg, Germany.

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http://dx.doi.org/10.1038/nature15394DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4617611PMC
October 2015

Candidate gene methylation studies are at high risk of erroneous conclusions.

Epigenomics 2015 ;7(1):13-5

Center for Biomarker Research & Personalized Medicine, Virginia Common-wealth University, PO Box 980533, Richmond, VA 23298, USA.

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http://dx.doi.org/10.2217/epi.14.70DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5503464PMC
September 2015

Refinement of schizophrenia GWAS loci using methylome-wide association data.

Hum Genet 2015 Jan 7;134(1):77-87. Epub 2014 Oct 7.

Center for Biomarker Research and Personalized Medicine, School of Pharmacy, Virginia Commonwealth University, McGuire Hall, Room 219, P. O. Box 980533, Richmond, VA, 23298-0581, USA,

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http://dx.doi.org/10.1007/s00439-014-1494-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4282961PMC
January 2015

Matrix eQTL: ultra fast eQTL analysis via large matrix operations.

Bioinformatics 2012 May 6;28(10):1353-8. Epub 2012 Apr 6.

Department of Biostatistics, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.

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http://dx.doi.org/10.1093/bioinformatics/bts163DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3348564PMC
May 2012

seeQTL: a searchable database for human eQTLs.

Bioinformatics 2012 Feb 13;28(3):451-2. Epub 2011 Dec 13.

Department of Biostatistics, University of North Carolina, Chapel Hill, NC 27599, USA.

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http://dx.doi.org/10.1093/bioinformatics/btr678DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3268245PMC
February 2012

Computational tools for discovery and interpretation of expression quantitative trait loci.

Pharmacogenomics 2012 Feb;13(3):343-52

Department of Biostatistics, University of North Carolina, Chapel Hill, NC 27599, USA.

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http://dx.doi.org/10.2217/pgs.11.185DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3295835PMC
February 2012

Sex-specific gene expression in the BXD mouse liver.

Physiol Genomics 2010 Aug 15;42(3):456-68. Epub 2010 Jun 15.

Department of Environmental Sciences and Engineering, University of North Carolina, Chapel Hill, North Carolina 27599, USA.

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http://dx.doi.org/10.1152/physiolgenomics.00110.2009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2929887PMC
August 2010

The Set2/Rpd3S pathway suppresses cryptic transcription without regard to gene length or transcription frequency.

PLoS One 2009 19;4(3):e4886. Epub 2009 Mar 19.

Curriculum in Genetics and Molecular Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0004886PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2654109PMC
May 2009

FastMap: fast eQTL mapping in homozygous populations.

Bioinformatics 2009 Feb 17;25(4):482-9. Epub 2008 Dec 17.

Department of Environmental Sciences and Engineering, University of North Carolina, Chapel Hill, North Carolina 27599, USA.

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http://dx.doi.org/10.1093/bioinformatics/btn648DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2642639PMC
February 2009

Merging two gene-expression studies via cross-platform normalization.

Bioinformatics 2008 May 5;24(9):1154-60. Epub 2008 Mar 5.

Department of Statistics and Operations Research, University of North Carolina at Chapel Hill, NC, USA.

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http://dx.doi.org/10.1093/bioinformatics/btn083DOI Listing
May 2008