Andrew J Brown

Andrew J Leigh Brown

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Andrew J Brown

Andrew J Leigh Brown

Publications by authors named "Andrew J Leigh Brown"

41Publications

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1PubMed Central Citations

Quantifying predictors for the spatial diffusion of avian influenza virus in China.

BMC Evol Biol 2017 01 13;17(1):16. Epub 2017 Jan 13.

The Roslin Institute, University of Edinburgh, Easter Bush Campus, Midlothian, EH25 9RG, UK.

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http://dx.doi.org/10.1186/s12862-016-0845-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5237338PMC
January 2017

Reconstructing the HIV-1 CRF02_AG and CRF06_cpx epidemics in Burkina Faso and West Africa using early samples.

Infect Genet Evol 2016 12 6;46:209-218. Epub 2016 Apr 6.

Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK.

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http://dx.doi.org/10.1016/j.meegid.2016.03.038DOI Listing
December 2016

Using nearly full-genome HIV sequence data improves phylogeny reconstruction in a simulated epidemic.

Sci Rep 2016 12 23;6:39489. Epub 2016 Dec 23.

Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK.

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http://dx.doi.org/10.1038/srep39489DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5180198PMC
December 2016

Analysis of the history and spread of HIV-1 in Uganda using phylodynamics.

J Gen Virol 2015 Jul 27;96(Pt 7):1890-8. Epub 2015 Feb 27.

1Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK.

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http://dx.doi.org/10.1099/vir.0.000107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4635457PMC
July 2015

Determining the phylogenetic and phylogeographic origin of highly pathogenic avian influenza (H7N3) in Mexico.

PLoS One 2014 16;9(9):e107330. Epub 2014 Sep 16.

Institute of Evolutionary Biology, University of Edinburgh, Ashworth Laboratories, Edinburgh, United Kingdom.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0107330PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4165766PMC
May 2015

Phylogenetic analyses reveal HIV-1 infections between men misclassified as heterosexual transmissions.

AIDS 2014 Aug;28(13):1967-75

aDepartment of Infection, University College London bHIV and STI Department, Public Health England, London cSchool of Biological Sciences, University of Edinburgh, Edinburgh dInstitute of Biodiversity, University of Glasgow, Glasgow eMedical Research Council Clinical Trial Unit fHIV and Sexual Health Clinic, Chelsea and Westminster Hospital, London, UK.

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http://dx.doi.org/10.1097/QAD.0000000000000383DOI Listing
August 2014

The contribution of viral genotype to plasma viral set-point in HIV infection.

PLoS Pathog 2014 May 1;10(5):e1004112. Epub 2014 May 1.

Institute of Evolutionary Biology, University of Edinburgh, Ashworth Laboratories, Edinburgh, United Kingdom.

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http://dx.doi.org/10.1371/journal.ppat.1004112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4006911PMC
May 2014

Dynamics of the emergence and establishment of a newly dominant genotype of Japanese encephalitis virus throughout Asia.

J Virol 2014 Apr 5;88(8):4522-32. Epub 2014 Feb 5.

Department of Pathology, Center for Tropical Diseases, Center for Biodefense and Emerging Diseases, Institute for Human Infections and Immunity, and Sealy Center for Vaccine Development, University of Texas Medical Branch, Galveston, Texas, USA.

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http://jvi.asm.org/content/88/8/4522.full.pdf
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http://jvi.asm.org/cgi/doi/10.1128/JVI.02686-13
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http://dx.doi.org/10.1128/JVI.02686-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3993778PMC
April 2014

Phylogeography of Japanese encephalitis virus: genotype is associated with climate.

PLoS Negl Trop Dis 2013 29;7(8):e2411. Epub 2013 Aug 29.

Center for Biodefense and Emerging Infectious Diseases, University of Texas Medical Branch, Galveston, Texas, USA.

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http://dx.doi.org/10.1371/journal.pntd.0002411DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3757071PMC
February 2014

Reassortment patterns of avian influenza virus internal segments among different subtypes.

BMC Evol Biol 2014 Jan 24;14:16. Epub 2014 Jan 24.

University of Edinburgh, Institute of Evolutionary Biology, Ashworth Laboratories, West Mains Road, Edinburgh EH9 3JT, UK.

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http://dx.doi.org/10.1186/1471-2148-14-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3905155PMC
January 2014

Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza.

BMC Evol Biol 2013 Oct 9;13:222. Epub 2013 Oct 9.

Institute for Evolutionary Biology, University of Edinburgh, Ashworth Building, West Mains Road, Edinburgh EH9 3JT, Scotland, UK.

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http://dx.doi.org/10.1186/1471-2148-13-222DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3854068PMC
October 2013

Estimating the rate of intersubtype recombination in early HIV-1 group M strains.

J Virol 2013 Feb 12;87(4):1967-73. Epub 2012 Dec 12.

University of Edinburgh, Institute of Evolutionary Biology, Ashworth Laboratories, Edinburgh, United Kingdom.

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http://dx.doi.org/10.1128/JVI.02478-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3571495PMC
February 2013

Origin and fate of A/H1N1 influenza in Scotland during 2009.

J Gen Virol 2012 Jun 15;93(Pt 6):1253-60. Epub 2012 Feb 15.

Institute of Evolutionary Biology, University of Edinburgh, Ashworth Laboratories, Edinburgh EH9 3JT, UK.

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http://dx.doi.org/10.1099/vir.0.039370-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3755513PMC
June 2012

Estimating the rate of intersubtype recombination in early HIV-1 group M strains.

J Virol 2013 Feb 12;87(4):1967-73. Epub 2012 Dec 12.

University of Edinburgh, Institute of Evolutionary Biology, Ashworth Laboratories, Edinburgh, United Kingdom.

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http://dx.doi.org/10.1128/JVI.02478-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3571495PMC
February 2013

Transmission network parameters estimated from HIV sequences for a nationwide epidemic.

J Infect Dis 2011 Nov 15;204(9):1463-9. Epub 2011 Sep 15.

Institute of Evolutionary Biology, University of Edinburgh, London, United Kingdom.

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http://dx.doi.org/10.1093/infdis/jir550DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3182313PMC
November 2011

Phylodynamics of infectious disease epidemics.

Genetics 2009 Dec 21;183(4):1421-30. Epub 2009 Sep 21.

Department of Epidemiology, University of Michigan, Ann Arbor, Michigan 48109, USA.

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http://www.genetics.org/lookup/doi/10.1534/genetics.109.1060
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http://dx.doi.org/10.1534/genetics.109.106021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2787429PMC
December 2009

Molecular phylodynamics of the heterosexual HIV epidemic in the United Kingdom.

PLoS Pathog 2009 Sep 25;5(9):e1000590. Epub 2009 Sep 25.

Institute of Evolutionary Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, Scotland, United Kingdom.

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http://dx.doi.org/10.1371/journal.ppat.1000590DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2742734PMC
September 2009

A maximum likelihood method for detecting directional evolution in protein sequences and its application to influenza A virus.

Mol Biol Evol 2008 Sep 29;25(9):1809-24. Epub 2008 May 29.

Department of Pathology, University of California, San Diego, CA, USA.

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http://dx.doi.org/10.1093/molbev/msn123DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2515872PMC
September 2008

Genetic basis of variation in tenofovir drug susceptibility in HIV-1.

AIDS 2008 Jun;22(10):1113-23

Institute of Evolutionary Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, Scotland, UK.

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http://dx.doi.org/10.1097/QAD.0b013e32830184a1DOI Listing
June 2008

Episodic sexual transmission of HIV revealed by molecular phylodynamics.

PLoS Med 2008 Mar;5(3):e50

Institute of Evolutionary Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, Scotland.

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http://dx.doi.org/10.1371/journal.pmed.0050050DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2267814PMC
March 2008

Adaptation to human populations is revealed by within-host polymorphisms in HIV-1 and hepatitis C virus.

PLoS Pathog 2007 Mar;3(3):e45

Department of Pathology, University of California San Diego, La Jolla, California, United States of America.

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http://dx.doi.org/10.1371/journal.ppat.0030045DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1839164PMC
March 2007

Differences in HIV-1 pol sequences from female genital tract and blood during antiretroviral therapy.

J Acquir Immune Defic Syndr 2003 Sep;34(1):37-44

Division of Infectious Diseases, Vanderbilt University Medical Center, Nashville, Tennessee 37232-2372, USA.

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http://dx.doi.org/10.1097/00126334-200309010-00005DOI Listing
September 2003

Association of antiretroviral resistance genotypes with response to therapy--comparison of three models.

Antivir Ther 2002 Sep;7(3):151-7

Centre for HIV Research, Institute of Cell, Animal and Population Biology, University of Edinburgh, Edinburgh, UK.

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http://hiv.bio.ed.ac.uk/AJLB.Publications.(.pdf.files)/Quigg
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September 2002