Andrew I Su

Andrew I Su

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Andrew I Su

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Time-resolved evaluation of compound repositioning predictions on a text-mined knowledge network.

BMC Bioinformatics 2019 Dec 11;20(1):653. Epub 2019 Dec 11.

The Scripps Research Institute, 10550 N Torrey Pines Rd, La Jolla, CA, 92037, USA.

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http://dx.doi.org/10.1186/s12859-019-3297-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6907279PMC
December 2019

Applying Citizen Science to Gene, Drug, and Disease Relationship Extraction from Biomedical Abstracts.

Bioinformatics 2019 Sep 3. Epub 2019 Sep 3.

Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA.

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http://dx.doi.org/10.1093/bioinformatics/btz678DOI Listing
September 2019

ChlamBase: a curated model organism database for the Chlamydia research community.

Database (Oxford) 2019 01;2019

Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA.

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http://dx.doi.org/10.1093/database/baz041DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6463448PMC
January 2019

ChlamBase: a curated model organism database for the Chlamydia research community.

Database (Oxford) 2019 01;2019

Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA.

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http://dx.doi.org/10.1093/database/baz091DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6580685PMC
January 2019

Triflic Acid Treatment Enables LC-MS/MS Analysis of Insoluble Bacterial Biomass.

J Proteome Res 2018 09 8;17(9):2978-2986. Epub 2018 Aug 8.

Department of Molecular Medicine and Department of Integrative Structural and Computational Biology , The Scripps Research Institute , 10550 North Torrey Pines Road , La Jolla , California 92037 , United States.

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http://dx.doi.org/10.1021/acs.jproteome.8b00166DOI Listing
September 2018

Gene Profiling and T Cell Receptor Sequencing from Antigen-Specific CD4 T Cells.

Methods Mol Biol 2018 ;1712:217-238

Department of Immunology and Microbiology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA, 92037, USA.

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http://dx.doi.org/10.1007/978-1-4939-7514-3_14DOI Listing
July 2018

Exploring applications of crowdsourcing to cryo-EM.

J Struct Biol 2018 07 24;203(1):37-45. Epub 2018 Feb 24.

Integrative Structural and Computational Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037 USA. Electronic address:

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http://dx.doi.org/10.1016/j.jsb.2018.02.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6086358PMC
July 2018

A genome-wide survey of mutations in the Jurkat cell line.

BMC Genomics 2018 May 8;19(1):334. Epub 2018 May 8.

Department of Molecular Medicine, The Scripps Research Institute, La Jolla, California, 92037, USA.

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http://dx.doi.org/10.1186/s12864-018-4718-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5941560PMC
May 2018

Metaproteomics of Colonic Microbiota Unveils Discrete Protein Functions among Colitic Mice and Control Groups.

Proteomics 2018 02 2;18(3-4). Epub 2018 Feb 2.

Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, USA.

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http://dx.doi.org/10.1002/pmic.201700391DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5921860PMC
February 2018

Cross-linking BioThings APIs through JSON-LD to facilitate knowledge exploration.

BMC Bioinformatics 2018 02 1;19(1):30. Epub 2018 Feb 1.

Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA.

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http://dx.doi.org/10.1186/s12859-018-2041-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5796402PMC
February 2018

Combining machine learning, crowdsourcing and expert knowledge to detect chemical-induced diseases in text.

Database (Oxford) 2016 15;2016. Epub 2016 Jun 15.

Research Programme on Biomedical Informatics (GRIB), IMIM, UPF, Barcelona, Spain and

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http://dx.doi.org/10.1093/database/baw094DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4908671PMC
November 2017

Academics can help shape Wikipedia.

Science 2017 Aug 10;357(6351):557-558. Epub 2017 Aug 10.

The Scripps Research Institute, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1126/science.aao0462DOI Listing
August 2017

Quantitative Metaproteomics and Activity-Based Probe Enrichment Reveals Significant Alterations in Protein Expression from a Mouse Model of Inflammatory Bowel Disease.

J Proteome Res 2017 02 23;16(2):1014-1026. Epub 2017 Jan 23.

Department of Molecular and Experimental Medicine, ‡Department of Integrative Structural and Computational Biology, and §Department of Chemical Physiology, The Scripps Research Institute , 10550 North Torrey Pines Road, La Jolla, California 92037, United States.

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http://dx.doi.org/10.1021/acs.jproteome.6b00938DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5441882PMC
February 2017

A crowdsourcing workflow for extracting chemical-induced disease relations from free text.

Database (Oxford) 2016 17;2016. Epub 2016 Apr 17.

Department of Molecular and Experimental Medicine, the Scripps Research Institute, La Jolla, CA 92037, USA

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http://dx.doi.org/10.1093/database/baw051DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4834205PMC
January 2017

Citizen Science for Mining the Biomedical Literature.

Citiz Sci 2016 31;1(2). Epub 2016 Dec 31.

Department of Molecular and Experimental Medicine, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA.

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http://theoryandpractice.citizenscienceassociation.org/artic
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http://dx.doi.org/10.5334/cstp.56DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6226017PMC
December 2016

Data-Driven Approach To Determine Popular Proteins for Targeted Proteomics Translation of Six Organ Systems.

J Proteome Res 2016 11 19;15(11):4126-4134. Epub 2016 Jul 19.

Advanced Clinical Biosystems Research Institute, Department of Medicine and The Heart Institute, Cedars-Sinai Medical Center , Los Angeles, California 90048, United States.

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http://dx.doi.org/10.1021/acs.jproteome.6b00095DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5120959PMC
November 2016

Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes.

Database (Oxford) 2016 28;2016. Epub 2016 Mar 28.

Department of Molecular and Experimental Medicine, the Scripps Research Institute, La Jolla, USA

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http://dx.doi.org/10.1093/database/baw028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4822648PMC
October 2016

A comprehensive and scalable database search system for metaproteomics.

BMC Genomics 2016 08 16;17(1):642. Epub 2016 Aug 16.

Department of Molecular and Experimental Medicine, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA, 92037, USA.

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http://dx.doi.org/10.1186/s12864-016-2855-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4986259PMC
August 2016

Branch: an interactive, web-based tool for testing hypotheses and developing predictive models.

Bioinformatics 2016 07 7;32(13):2072-2074. Epub 2016 Mar 7.

Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1093/bioinformatics/btw117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4920125PMC
July 2016

YY1 plays an essential role at all stages of B-cell differentiation.

Proc Natl Acad Sci U S A 2016 07 22;113(27):E3911-20. Epub 2016 Jun 22.

Department of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, CA 92037;

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http://www.pnas.org/content/113/27/E3911.full.pdf
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http://dx.doi.org/10.1073/pnas.1606297113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4941496PMC
July 2016

High-performance web services for querying gene and variant annotation.

Genome Biol 2016 05 6;17(1):91. Epub 2016 May 6.

Department of Molecular and Experimental Medicine, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA, 92037, USA.

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http://dx.doi.org/10.1186/s13059-016-0953-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4858870PMC
May 2016

Crowdsourcing and mining crowd data.

Pac Symp Biocomput 2015 :267-9

National Center for Biotechnology Information (NCBI), 8600 Rockville Pike, Bethesda, MD 20894, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4376322PMC
April 2016

Microtask crowdsourcing for disease mention annotation in PubMed abstracts.

Pac Symp Biocomput 2015 :282-93

Molecular and Experimental Medicine, The Scripps Research Institute, 10550 N. Torrey Pines Rd., La Jolla, CA, 92037, USA.

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http://psb.stanford.edu/psb-online/proceedings/psb15/good.pd
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4299946PMC
April 2016

BioGPS: building your own mash-up of gene annotations and expression profiles.

Nucleic Acids Res 2016 Jan 17;44(D1):D313-6. Epub 2015 Nov 17.

Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA

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http://nar.oxfordjournals.org/content/44/D1/D313.full.pdf
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http://nar.oxfordjournals.org/lookup/doi/10.1093/nar/gkv1104
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http://dx.doi.org/10.1093/nar/gkv1104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702805PMC
January 2016

Omics Pipe: a community-based framework for reproducible multi-omics data analysis.

Bioinformatics 2015 Jun 30;31(11):1724-8. Epub 2015 Jan 30.

Department of Molecular and Experimental Medicine, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA and Department of Human Biology, J. Craig Venter Institute, 4120 Capricorn Lane, La Jolla, CA 92037, USA.

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http://bioinformatics.oxfordjournals.org/content/early/2015/
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http://bioinformatics.oxfordjournals.org/content/early/2015/
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http://bioinformatics.oxfordjournals.org/cgi/doi/10.1093/bio
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http://dx.doi.org/10.1093/bioinformatics/btv061DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4443682PMC
June 2015

OncoRep: an n-of-1 reporting tool to support genome-guided treatment for breast cancer patients using RNA-sequencing.

BMC Med Genomics 2015 May 21;8:24. Epub 2015 May 21.

Department of Molecular and Experimental Medicine, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, 92037, CA, USA.

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http://dx.doi.org/10.1186/s12920-015-0095-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4494802PMC
May 2015

Functional expression of dental plaque microbiota.

Front Cell Infect Microbiol 2014 14;4:108. Epub 2014 Aug 14.

Department of Cariology and Comprehensive Care, College of Dentistry, New York University New York, NY, USA.

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http://dx.doi.org/10.3389/fcimb.2014.00108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4132376PMC
March 2015

Harnessing the heart of big data.

Circ Res 2015 Mar;116(7):1115-9

From the Departments of Physiology, Medicine, and Bioinformatics (S.B.S., P.P.) and Department of Medicine (K.W.), University of California, Los Angeles School of Medicine; Department of Molecular and Experimental Medicine (A.I.S.) and Departments of Chemical Physiology and Molecular and Cellular Neurobiology (J.R.Y.), The Scripps Research Institute, La Jolla, CA; Proteomics Services, European Molecular Biology Laboratories, European Bioinformatics Institute, Hinxton, Cambridge, United Kingdom (H.H.); and Departments of Physiology and Medicine, University of Mississippi Medical Center, Jackson (M.L.L.).

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http://dx.doi.org/10.1161/CIRCRESAHA.115.306013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4721634PMC
March 2015

Oxidative stress diverts tRNA synthetase to nucleus for protection against DNA damage.

Mol Cell 2014 Oct 2;56(2):323-332. Epub 2014 Oct 2.

Departments of Chemical Physiology and Cell and Molecular Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S10972765140071
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http://dx.doi.org/10.1016/j.molcel.2014.09.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4224670PMC
October 2014

Dizeez: an online game for human gene-disease annotation.

PLoS One 2013 7;8(8):e71171. Epub 2013 Aug 7.

Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, California, United States of America.

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https://www.plos.org/wp-content/uploads/2013/05/pone-08-08-l
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http://dx.plos.org/10.1371/journal.pone.0071171
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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0071171PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3737187PMC
August 2014

The cure: design and evaluation of a crowdsourcing game for gene selection for breast cancer survival prediction.

JMIR Serious Games 2014 Jul 29;2(2):e7. Epub 2014 Jul 29.

The Scripps Research Institute, Department of Molecular and Experimental Medicine, La Jolla, CA, United States.

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http://dx.doi.org/10.2196/games.3350DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4307816PMC
July 2014

Ten simple rules for cultivating open science and collaborative R&D.

PLoS Comput Biol 2013 26;9(9):e1003244. Epub 2013 Sep 26.

Waterloo Institute for Complexity and Innovation, Waterloo, Ontario, Canada.

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http://dx.doi.org/10.1371/journal.pcbi.1003244DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3784487PMC
April 2014

Gene Wiki Reviews: marrying crowdsourcing with traditional peer review.

Gene 2013 Dec 5;531(2):125. Epub 2013 Sep 5.

Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA. Electronic address:

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http://dx.doi.org/10.1016/j.gene.2013.08.093DOI Listing
December 2013

Deep sequencing of the murine IgH repertoire reveals complex regulation of nonrandom V gene rearrangement frequencies.

J Immunol 2013 Sep 29;191(5):2393-402. Epub 2013 Jul 29.

Department of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.4049/jimmunol.1301279DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3778908PMC
September 2013

Crowdsourcing for bioinformatics.

Bioinformatics 2013 Aug 19;29(16):1925-33. Epub 2013 Jun 19.

Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1093/bioinformatics/btt333DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3722523PMC
August 2013

Unifying model for molecular determinants of the preselection Vβ repertoire.

Proc Natl Acad Sci U S A 2013 Aug 5;110(34):E3206-15. Epub 2013 Aug 5.

Department of Pathology and Immunology, Washington University School of Medicine in St Louis, St Louis, MO 63110, USA.

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http://www.pnas.org/lookup/doi/10.1073/pnas.1304048110
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http://dx.doi.org/10.1073/pnas.1304048110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3752219PMC
August 2013

Stress-independent activation of XBP1s and/or ATF6 reveals three functionally diverse ER proteostasis environments.

Cell Rep 2013 Apr 11;3(4):1279-92. Epub 2013 Apr 11.

Department of Chemistry, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1016/j.celrep.2013.03.024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3754422PMC
April 2013

A task-based approach for Gene Ontology evaluation.

J Biomed Semantics 2013 Apr 15;4 Suppl 1:S4. Epub 2013 Apr 15.

The Scripps Research Institute, La Jolla, CA, USA.

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http://dx.doi.org/10.1186/2041-1480-4-S1-S4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3633003PMC
April 2013

Zone-specific gene expression patterns in articular cartilage.

Arthritis Rheum 2013 Feb;65(2):418-28

The Scripps Research Institute and Shiley Center for Orthopaedic Research and Education, Scripps Clinic, La Jolla, California, USA.

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http://dx.doi.org/10.1002/art.37760DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3558601PMC
February 2013

BioGPS and MyGene.info: organizing online, gene-centric information.

Nucleic Acids Res 2013 Jan 21;41(Database issue):D561-5. Epub 2012 Nov 21.

Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1093/nar/gks1114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531157PMC
January 2013

BioGPS and GXD: mouse gene expression data-the benefits and challenges of data integration.

Mamm Genome 2012 Oct 31;23(9-10):550-8. Epub 2012 Jul 31.

The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA.

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http://dx.doi.org/10.1007/s00335-012-9408-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3469763PMC
October 2012

Identification of serum-derived sphingosine-1-phosphate as a small molecule regulator of YAP.

Chem Biol 2012 Aug 9;19(8):955-62. Epub 2012 Aug 9.

Genomics Institute of the Novartis Research Foundation, San Diego, CA 92121, USA.

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http://dx.doi.org/10.1016/j.chembiol.2012.07.005DOI Listing
August 2012

Building a biomedical semantic network in Wikipedia with Semantic Wiki Links.

Database (Oxford) 2012 20;2012:bar060. Epub 2012 Mar 20.

The Scripps Research Institute, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1093/database/bar060DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3308151PMC
June 2012

Linking genes to diseases with a SNPedia-Gene Wiki mashup.

J Biomed Semantics 2012 Apr 24;3 Suppl 1:S6. Epub 2012 Apr 24.

The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA, 92037, USA.

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http://dx.doi.org/10.1186/2041-1480-3-S1-S6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3337266PMC
April 2012

CAFET algorithm reveals Wnt/PCP signature in lung squamous cell carcinoma.

PLoS One 2011 10;6(10):e25807. Epub 2011 Oct 10.

Genomics Institute of the Novartis Research Foundation, San Diego, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0025807PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3189939PMC
February 2012

The Gene Wiki in 2011: community intelligence applied to human gene annotation.

Nucleic Acids Res 2012 Jan 10;40(Database issue):D1255-61. Epub 2011 Nov 10.

Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1093/nar/gkr925DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245148PMC
January 2012

Mining the Gene Wiki for functional genomic knowledge.

BMC Genomics 2011 Dec 13;12:603. Epub 2011 Dec 13.

Department of Molecular and Experimental Medicine, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1186/1471-2164-12-603DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3271090PMC
December 2011

Games with a scientific purpose.

Genome Biol 2011 Dec 28;12(12):135. Epub 2011 Dec 28.

Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1186/gb-2011-12-12-135DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3334605PMC
December 2011

Phenotypic characterization of a genetically diverse panel of mice for behavioral despair and anxiety.

PLoS One 2010 Dec 29;5(12):e14458. Epub 2010 Dec 29.

Department of Neuroscience, The Scripps Research Institute-Scripps Florida, Jupiter, Florida, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0014458PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3012073PMC
December 2010

BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources.

Genome Biol 2009 17;10(11):R130. Epub 2009 Nov 17.

Genomics Institute of the Novartis Research Foundation, 10675 John Jay Hopkins Dr, San Diego, CA 92121, USA.

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http://dx.doi.org/10.1186/gb-2009-10-11-r130DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3091323PMC
July 2010

The Gene Wiki: community intelligence applied to human gene annotation.

Nucleic Acids Res 2010 Jan 15;38(Database issue):D633-9. Epub 2009 Sep 15.

Genomics Institute of the Novartis Research Foundation, San Diego, CA 92121, USA.

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http://dx.doi.org/10.1093/nar/gkp760DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808918PMC
January 2010

Clock gene wikis available: join the "long tail".

J Biol Rhythms 2008 Oct;23(5):456-7

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http://dx.doi.org/10.1177/0748730408322866DOI Listing
October 2008

Genetical genomics: spotlight on QTL hotspots.

PLoS Genet 2008 Oct 24;4(10):e1000232. Epub 2008 Oct 24.

Groningen Bioinformatics Centre, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Kerklaan 30, Haren, The Netherlands.

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http://dx.doi.org/10.1371/journal.pgen.1000232DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2563687PMC
October 2008

A gene wiki for community annotation of gene function.

PLoS Biol 2008 Jul;6(7):e175

San Diego State University, Bioinformatics and Medical Informatics Graduate Program, San Diego, California, USA.

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http://dx.doi.org/10.1371/journal.pbio.0060175DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2443188PMC
July 2008

Expression analysis of G Protein-Coupled Receptors in mouse macrophages.

Immunome Res 2008 Apr 29;4. Epub 2008 Apr 29.

Cooperative Research Centre for Chronic Inflammatory Diseases and Special Research Centre for Functional and Applied Genomics, Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, 4072, Australia.

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http://www.immunome-research.com/content/4/1/5
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http://dx.doi.org/10.1186/1745-7580-4-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2394514PMC
April 2008

Visual artificial tongue for quantitative metal-cation analysis by an off-the-shelf dye array.

Chemistry 2006 Jul;12(22):5691-6

Department of Chemistry, New York University, New York, NY 10003, USA.

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http://dx.doi.org/10.1002/chem.200600307DOI Listing
July 2006

The influence of cholesterol and lipid metabolism on host cell structure and hepatitis C virus replication.

Biochem Cell Biol 2006 Feb;84(1):67-79

Steacie Institute for Molecular Sciences, National Research Council of Canada, Ottawa, ON.

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http://dx.doi.org/10.1139/o05-149DOI Listing
February 2006

Comparative analysis of haplotype association mapping algorithms.

BMC Bioinformatics 2006 Feb 9;7:61. Epub 2006 Feb 9.

Genomics Institute of the Novartis Research Foundation, San Diego, USA.

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http://dx.doi.org/10.1186/1471-2105-7-61DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1409800PMC
February 2006

Gene expression evolves faster in narrowly than in broadly expressed mammalian genes.

Mol Biol Evol 2005 Oct 29;22(10):2113-8. Epub 2005 Jun 29.

Department of Ecology and Evolution, University of Chicago, USA.

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http://dx.doi.org/10.1093/molbev/msi206DOI Listing
October 2005

Large-scale profiling of Rab GTPase trafficking networks: the membrome.

Mol Biol Cell 2005 Aug 8;16(8):3847-64. Epub 2005 Jun 8.

Department of Cell Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1091/mbc.e05-01-0062DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1182321PMC
August 2005

HierS: hierarchical scaffold clustering using topological chemical graphs.

J Med Chem 2005 May;48(9):3182-93

Genomics Institute of the Novartis Research Foundation, 10675 John Jay Hopkins Drive, San Diego, California 92121, USA.

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http://dx.doi.org/10.1021/jm049032dDOI Listing
May 2005

Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'.

Nat Genet 2005 Mar 13;37(3):225-32. Epub 2005 Feb 13.

Department of Stem Cell Biology, University of Groningen, Antonius Deusinglaan 1, 9713 AV Groningen, the Netherlands.

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http://dx.doi.org/10.1038/ng1497DOI Listing
March 2005

Applications of a rat multiple tissue gene expression data set.

Genome Res 2004 Apr;14(4):742-9

Genomics Institute of the Novartis Research Foundation, San Diego, California 92121, USA.

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http://dx.doi.org/10.1101/gr.2161804DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC383321PMC
April 2004

Genome-wide analysis of CREB target genes reveals a core promoter requirement for cAMP responsiveness.

Mol Cell 2003 Apr;11(4):1101-8

Salk Institute for Biological Studies, La Jolla, California 92037, USA.

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http://dx.doi.org/10.1016/s1097-2765(03)00134-5DOI Listing
April 2003