Andrew I Brooks

Andrew I Brooks

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Andrew I Brooks

Andrew I Brooks

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Ethanol treatment of lymphoblastoid cell lines from alcoholics and non-alcoholics causes many subtle changes in gene expression.

Alcohol 2014 Sep 22;48(6):603-10. Epub 2014 Jul 22.

Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN, USA; Department of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, IN, USA. Electronic address:

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http://dx.doi.org/10.1016/j.alcohol.2014.07.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4730944PMC
September 2014

Research capacity. Enabling the genomic revolution in Africa.

Authors:
Charles Rotimi Akin Abayomi Alash'le Abimiku Victoria May Adabayeri Clement Adebamowo Ezekiel Adebiyi Adebowale D Ademola Adebowale Adeyemo Dwomoa Adu Dissou Affolabi Godfred Agongo Samuel Ajayi Sally Akarolo-Anthony Rufus Akinyemi Albert Akpalu Marianne Alberts Orlando Alonso Betancourt Ahmed Mansour Alzohairy Gobena Ameni Olukemi Amodu Gabriel Anabwani Kristian Andersen Fatiu Arogundade Oyedunni Arulogun Danny Asogun Rasheed Bakare Naby Balde Mary Lynn Baniecki Christine Beiswanger Alia Benkahla Lara Bethke Micheal Boehnke Vincent Boima James Brandful Andrew I Brooks Frank C Brosius Chester Brown Bruno Bucheton David T Burke Barrington G Burnett Stacy Carrington-Lawrence Nadia Carstens John Chisi Alan Christoffels Richard Cooper Heather Cordell Nigel Crowther Talishiea Croxton Jantina de Vries Leslie Derr Peter Donkor Seydou Doumbia Audrey Duncanson Ivy Ekem Ahmed El Sayed Mark E Engel John C K Enyaru Dean Everett Faisal M Fadlelmola Eyitayo Fakunle Kenneth H Fischbeck Anne Fischer Onikepe Folarin Junaid Gamieldien Robert F Garry Simani Gaseitsiwe Rasheed Gbadegesin Anita Ghansah Maria Giovanni Parham Goesbeck F Xavier Gomez-Olive Donald S Grant Ravnit Grewal Mark Guyer Neil A Hanchard Christian T Happi Scott Hazelhurst Branwen J Hennig Christiane Hertz- Fowler Winston Hide Friedhelm Hilderbrandt Christopher Hugo-Hamman Muntaser E Ibrahim Regina James Yasmina Jaufeerally-Fakim Carolyn Jenkins Ute Jentsch Pan-Pan Jiang Moses Joloba Victor Jongeneel Fourie Joubert Mukthar Kader Kathleen Kahn Pontiano Kaleebu Saidi H Kapiga Samar Kamal Kassim Ishmael Kasvosve Jonathan Kayondo Bernard Keavney Adeodata Kekitiinwa Sheik Humarr Khan Paul Kimmel Mary-Claire King Robert Kleta Mathurin Koffi Jeffrey Kopp Matthias Kretzler Judit Kumuthini Samuel Kyobe Catherine Kyobutungi Daniel T Lackland Karen A Lacourciere Guida Landouré Rita Lawlor Thomas Lehner Maia Lesosky Naomi Levitt Katherine Littler Zane Lombard Jeanne F Loring Sylvester Lyantagaye Annette Macleod Ebony B Madden Chengetai R Mahomva Julie Makani Manmak Mamven Marape Marape Graeme Mardon Patricia Marshall Darren P Martin Daniel Masiga Robin Mason Michael Mate-Kole Enock Matovu Mary Mayige Bongani M Mayosi Jean Claude Mbanya Sheryl A McCurdy Mark I McCarthy Helen McIlleron S O Mc'Ligeyo Corrine Merle Ana Olga Mocumbi Charles Mondo John V Moran Ayesha Motala Marva Moxey-Mims Wata Sununguko Mpoloka Chisomo L Msefula Thuli Mthiyane Nicola Mulder Gebregziab her Mulugeta Dieuodonne Mumba John Musuku Mo Nagdee Oyekanmi Nash Daouda Ndiaye Anh Quynh Nguyen Mark Nicol Oathokwa Nkomazana Shane Norris Betty Nsangi Alexander Nyarko Moffat Nyirenda Eileen Obe Reginald Obiakor Abraham Oduro Solomon F Ofori-Acquah Okechukwu Ogah Stephen Ogendo Kwaku Ohene-Frempong Akinlolu Ojo Timothy Olanrewaju John Oli Charlotte Osafo Odile Ouwe Missi Oukem-Boyer Bruce Ovbiagele Andrew Owen Mayowa Ojo Owolabi Lukman Owolabi Ellis Owusu-Dabo Guillaume Pare Rulan Parekh Hugh G Patterton Margaret B Penno Jane Peterson Rembert Pieper Jacob Plange-Rhule Martin Pollak Julia Puzak Rajkumar S Ramesar Michele Ramsay Rebekah Rasooly Shiksha Reddy Pardis C Sabeti Kwamena Sagoe Tunde Salako Oumar Samassékou Manjinder S Sandhu Osman Sankoh Fred Stephen Sarfo Marie Sarr Gasnat Shaboodien Issa Sidibe Gustave Simo Martin Simuunza Liam Smeeth Eugene Sobngwi Himla Soodyall Hermann Sorgho Oumou Sow Bah Sudha Srinivasan Dan J Stein Ezra S Susser Carmen Swanepoel Godfred Tangwa Andrew Tareila Ozlem Tastan Bishop Bamidele Tayo Nicki Tiffin Halidou Tinto Ekaete Tobin Stephen Meir Tollman Mahamadou Traoré Marsha J Treadwell Jennifer Troyer Masego Tsimako-Johnstone Vincent Tukei Ifeoma Ulasi Nzovu Ulenga Beverley van Rooyen Ablo Prudence Wachinou Salina P Waddy Alisha Wade Misaki Wayengera James Whitworth Louise Wideroff Cheryl A Winkler Sarah Winnicki Ambroise Wonkam Mengistu Yewondwos Tadase sen Nathan Yozwiak Heather Zar

Science 2014 Jun;344(6190):1346-8

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http://dx.doi.org/10.1126/science.1251546DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4138491PMC
June 2014

Multiple distinct CHRNB3-CHRNA6 variants are genetic risk factors for nicotine dependence in African Americans and European Americans.

Addiction 2014 May 18;109(5):814-22. Epub 2014 Feb 18.

Department of Medicine, Washington University School of Medicine, Saint Louis, MO, USA; Division of Biostatistics, Washington University School of Medicine, Saint Louis, MO, USA.

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http://dx.doi.org/10.1111/add.12478DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3984604PMC
May 2014

Significant effects of antiretroviral therapy on global gene expression in brain tissues of patients with HIV-1-associated neurocognitive disorders.

PLoS Pathog 2011 Sep 1;7(9):e1002213. Epub 2011 Sep 1.

Molecular Virology Division, St. Luke's-Roosevelt Hospital Center and Columbia University, New York, New York, United States of America.

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http://dx.doi.org/10.1371/journal.ppat.1002213DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3164642PMC
September 2011

Multiple recurrent de novo CNVs, including duplications of the 7q11.23 Williams syndrome region, are strongly associated with autism.

Neuron 2011 Jun;70(5):863-85

Program on Neurogenetics, Yale University School of Medicine, 230 South Frontage Road, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1016/j.neuron.2011.05.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3939065PMC
June 2011

Gene expression profiles of HIV-1-infected glia and brain: toward better understanding of the role of astrocytes in HIV-1-associated neurocognitive disorders.

J Neuroimmune Pharmacol 2010 Mar 21;5(1):44-62. Epub 2009 Aug 21.

Molecular Virology Division, St. Luke's-Roosevelt Hospital Center, 432 West 58th Street, Antenucci Building, Room 709, New York, NY 10019, USA.

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http://dx.doi.org/10.1007/s11481-009-9167-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3107560PMC
March 2010

Effect of the methoxychlor metabolite HPTE on the rat ovarian granulosa cell transcriptome in vitro.

Toxicol Sci 2009 Jul 4;110(1):95-106. Epub 2009 May 4.

Joint Graduate Program in Toxicology, School of Environmental and Biological Sciences, Rutgers, The State University of New Jersey, New Brunswick, New Jersey 08901, USA.

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http://dx.doi.org/10.1093/toxsci/kfp089DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2696328PMC
July 2009

Oligonucleotide microarrays reveal regulated genes related to inward arterial remodeling induced by urokinase plasminogen activator.

J Vasc Res 2009 24;46(3):177-87. Epub 2008 Sep 24.

Molecular Endocrinology Laboratory, Institute of Experimental Cardiology, Cardiology Research Center, Moscow, Russia.

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http://dx.doi.org/10.1159/000156703DOI Listing
May 2009

Preparing DNA from cell pellets for genotyping.

CSH Protoc 2007 Aug 1;2007:pdb.prot4829. Epub 2007 Aug 1.

Rutgers University Cell and DNA Repository, Department of Genetics, Piscataway, NJ 08854-8082, USA.

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http://dx.doi.org/10.1101/pdb.prot4829DOI Listing
August 2007

Preparing DNA from blood for genotyping.

CSH Protoc 2007 Aug 1;2007:pdb.prot4830. Epub 2007 Aug 1.

Rutgers University Cell and DNA Repository, Department of Genetics, Piscataway, NJ 08854-8082, USA.

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http://dx.doi.org/10.1101/pdb.prot4830DOI Listing
August 2007

Preparing DNA from saliva for genotyping.

CSH Protoc 2007 Aug 1;2007:pdb.prot4831. Epub 2007 Aug 1.

Rutgers University Cell and DNA Repository, Department of Genetics, Piscataway, NJ 08854-8082, USA.

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http://dx.doi.org/10.1101/pdb.prot4831DOI Listing
August 2007

Preparing DNA from Mammalian sources for genotyping.

CSH Protoc 2007 Aug 1;2007:pdb.top19. Epub 2007 Aug 1.

Rutgers University Cell and DNA Repository, Department of Genetics, Piscataway, NJ 08854-8082, USA.

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http://www.cshprotocols.org/cgi/doi/10.1101/pdb.top19
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http://dx.doi.org/10.1101/pdb.top19DOI Listing
August 2007

Big results from small samples: evaluation of amplification protocols for gene expression profiling.

J Biomol Tech 2007 Jul;18(3):150-61

Bionomics Research and Technology Center, University of Medicine and Dentistry of New Jersey, Piscataway, New Jersey 08857, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2062549PMC
July 2007

Transcriptional profiling of C57 and DBA strains of mice in the absence and presence of morphine.

BMC Genomics 2007 Mar 16;8:76. Epub 2007 Mar 16.

Department of Psychiatry, University of Medicine and Dentistry of New Jersey/New Jersey Medical School, Newark, NJ, USA.

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http://dx.doi.org/10.1186/1471-2164-8-76DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1851712PMC
March 2007

Long term metabolic arrest and recovery of HEK293 spheroids involves NF-kappaB signaling and sustained JNK activation.

J Cell Physiol 2006 Feb;206(2):526-36

Department of Biochemistry, Virginia Tech Center for Genomics, Virginia Tech, Blacksburg, Virginia, USA.

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http://dx.doi.org/10.1002/jcp.20499DOI Listing
February 2006

A novel role of circadian transcription factor DBP in hippocampal plasticity.

Mol Cell Neurosci 2006 Feb 27;31(2):303-14. Epub 2005 Oct 27.

Functional Genomics and Translational Neuroscience Laboratory, Department of Molecular Medicine and Pathology, University of Auckland, Auckland, New Zealand.

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http://dx.doi.org/10.1016/j.mcn.2005.09.019DOI Listing
February 2006

Role of the MEOX2 homeobox gene in neurovascular dysfunction in Alzheimer disease.

Nat Med 2005 Sep 14;11(9):959-65. Epub 2005 Aug 14.

Frank P. Smith Laboratories for Neuroscience and Neurosurgical Research, University of Rochester Medical Center, Arthur Kornberg Medical Research Building, 601 Elmwood Avenue, Box 670, Rochester, New York 14642, USA.

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http://dx.doi.org/10.1038/nm1287DOI Listing
September 2005

The effects of normalization on the correlation structure of microarray data.

BMC Bioinformatics 2005 May 16;6:120. Epub 2005 May 16.

Department of Biostatistics and Computational Biology, University of Rochester, New York 14642, USA.

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http://dx.doi.org/10.1186/1471-2105-6-120DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1156869PMC
May 2005

Reelin signaling is impaired in autism.

Biol Psychiatry 2005 Apr;57(7):777-87

Department of Psychiatry, Division of Neuroscience Research, University of Minnesota, Minneapolis, MN 55455, USA.

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http://dx.doi.org/10.1016/j.biopsych.2004.12.018DOI Listing
April 2005

A mouse model for study of systemic HIV-1 infection, antiviral immune responses, and neuroinvasiveness.

Proc Natl Acad Sci U S A 2005 Mar 23;102(10):3760-5. Epub 2005 Feb 23.

Molecular Virology Division, St. Luke's-Roosevelt Hospital Center, Columbia University Medical Center, 432 West 58th Street, New York, NY 10019, USA.

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http://dx.doi.org/10.1073/pnas.0500649102DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC553332PMC
March 2005

Developmental pesticide exposures and the Parkinson's disease phenotype.

Birth Defects Res A Clin Mol Teratol 2005 Mar;73(3):136-9

Environmental and Occupational Health Sciences Institute, University of Medicine and Dentistry of New Jersey, Robert Wood Johnson Medical School, 170 Frelinghuysen Road, Piscataway, NJ 08854, USA.

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http://dx.doi.org/10.1002/bdra.20118DOI Listing
March 2005

Microarray analysis of changes in cellular gene expression induced by productive infection of primary human astrocytes: implications for HAD.

J Neuroimmunol 2004 Dec;157(1-2):17-26

Molecular Virology Division, St. Luke's-Roosevelt Hospital Center, 432 West 58th Street, Antenucci Building, Room 709, New York, NY 10019, USA.

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http://dx.doi.org/10.1016/j.jneuroim.2004.08.032DOI Listing
December 2004

Altered gene expression in the eye of a mouse model for batten disease.

Invest Ophthalmol Vis Sci 2004 Sep;45(9):2893-905

Center for Aging and Developmental Biology, Aab Institute of Biomedical Sciences, University of Rochester School of Medicine and Dentistry, New York 14642, USA.

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http://dx.doi.org/10.1167/iovs.04-0143DOI Listing
September 2004

Effects of human immunodeficiency virus type 1 on astrocyte gene expression and function: potential role in neuropathogenesis.

J Neurovirol 2004 ;10 Suppl 1:25-32

Molecular Virology Division, St. Luke's-Roosevelt Hospital Center and College of Physicians and Surgeons, Columbia University, New York, New York 10019, USA.

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May 2004

Inhibition of neuronal phenotype by PTEN in PC12 cells.

Proc Natl Acad Sci U S A 2004 Mar 27;101(10):3627-31. Epub 2004 Feb 27.

Laboratory of Neurobiology and Behavior, The Rockefeller University, New York, NY 10021, USA.

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http://dx.doi.org/10.1073/pnas.0308289101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC373513PMC
March 2004

Skeletal muscle gene expression profiles in 20-29 year old and 65-71 year old women.

Exp Gerontol 2004 Mar;39(3):369-77

Department of Medicine, University of Rochester, Rochester, NY 14642, USA.

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http://dx.doi.org/10.1016/j.exger.2003.11.011DOI Listing
March 2004

Gene expression profile of aging in human muscle.

Physiol Genomics 2003 Jul 7;14(2):149-59. Epub 2003 Jul 7.

University of Rochester Medical Center, Rochester, New York 14642, USA.

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http://dx.doi.org/10.1152/physiolgenomics.00049.2003DOI Listing
July 2003

Microarray analysis of Pseudomonas aeruginosa quorum-sensing regulons: effects of growth phase and environment.

J Bacteriol 2003 Apr;185(7):2080-95

Department of Microbiology and Immunology, University of Rochester School of Medicine and Dentistry, New York 14642, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC151498PMC
http://dx.doi.org/10.1128/jb.185.7.2080-2095.2003DOI Listing
April 2003

Early changes in gene expression in two models of Batten disease.

FEBS Lett 2003 Mar;538(1-3):207-12

Center for Aging and Developmental Biology, University of Rochester School of Medicine and Dentistry, University of Rochester, Rochester, NY 14642, USA.

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http://dx.doi.org/10.1016/s0014-5793(03)00162-5DOI Listing
March 2003

Defects in expression of genes related to synaptic vesicle trafficking in frontal cortex of Alzheimer's disease.

Neurobiol Dis 2003 Mar;12(2):97-109

Department of Neurobiology & Anatomy, Center for Aging & Developmental Biology, University of Rochester, Rochester, NY 14642, USA.

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March 2003

Prediction of biologically significant components from microarray data: Independently Consistent Expression Discriminator (ICED).

Bioinformatics 2003 Jan;19(1):62-70

Department of Computer Science, University of Rochester School of Medicine and Dentistry, NY 14642, USA.

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http://dx.doi.org/10.1093/bioinformatics/19.1.62DOI Listing
January 2003

Functional categorization of gene expression changes in the cerebellum of a Cln3-knockout mouse model for Batten disease.

Mol Genet Metab 2003 Jan;78(1):17-30

Center for Functional Genomics, University of Rochester School of Medicine and Dentistry, University of Rochester, Rochester, NY 14642, USA.

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January 2003

Computational method for reducing variance with Affymetrix microarrays.

BMC Bioinformatics 2002 Aug 30;3:23. Epub 2002 Aug 30.

Department of Medicine, University of Rochester, Rochester, NY 14642, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC126253PMC
August 2002

An autoantibody inhibitory to glutamic acid decarboxylase in the neurodegenerative disorder Batten disease.

Hum Mol Genet 2002 Jun;11(12):1421-31

Center for Aging and Developmental Biology, University of Rochester School of Medicine and Dentistry, Rochester, NY 14642, USA.

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http://dx.doi.org/10.1093/hmg/11.12.1421DOI Listing
June 2002

Functional correction of established central nervous system deficits in an animal model of lysosomal storage disease with feline immunodeficiency virus-based vectors.

Proc Natl Acad Sci U S A 2002 Apr 16;99(9):6216-21. Epub 2002 Apr 16.

Department of Internal Medicine, University of Iowa Program in Gene Therapy, University of Iowa College of Medicine, Iowa City, IA 52242, USA.

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http://dx.doi.org/10.1073/pnas.082011999DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC122929PMC
April 2002

Glucocorticoid-regulated VEGF expression in ischemic skeletal muscle.

Mol Ther 2002 Mar;5(3):300-6

Department of Surgery, University of Rochester School of Medicine and Dentistry, Rochester, New York 14642, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S152500160290539
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http://dx.doi.org/10.1006/mthe.2002.0539DOI Listing
March 2002