Andrew H Beck

Andrew H Beck

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Assessment of Ki67 expression for breast cancer subtype classification and prognosis in the Nurses' Health Study.

Breast Cancer Res Treat 2017 Nov 8;166(2):613-622. Epub 2017 Aug 8.

Department of Epidemiology, Harvard TH Chan School of Public Health, Boston, MA, USA.

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http://dx.doi.org/10.1007/s10549-017-4421-3DOI Listing
November 2017

Alcohol consumption and breast tumor gene expression.

Breast Cancer Res 2017 Sep 12;19(1):108. Epub 2017 Sep 12.

Department of Biostatistics and Epidemiology, School of Public Health and Health Sciences, University of Massachusetts Amherst, 715 N Pleasant Street, Amherst, MA, 01003, USA.

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http://dx.doi.org/10.1186/s13058-017-0901-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5596493PMC
September 2017

Expression Quantitative Trait loci (QTL) in tumor adjacent normal breast tissue and breast tumor tissue.

PLoS One 2017 2;12(2):e0170181. Epub 2017 Feb 2.

Program in Genetic Epidemiology and Statistical Genetics, Harvard T.H. Chan School of Public Health, Boston, Massachusetts, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0170181PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5289428PMC
August 2017

Automated Classification of Benign and Malignant Proliferative Breast Lesions.

Sci Rep 2017 08 29;7(1):9900. Epub 2017 Aug 29.

Department of Pathology, Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, MA, USA.

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http://www.nature.com/articles/s41598-017-10324-y
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http://dx.doi.org/10.1038/s41598-017-10324-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5575012PMC
August 2017

Interobserver Reproducibility Among Gynecologic Pathologists in Diagnosing Heterologous Osteosarcomatous Component in Gynecologic Tract Carcinosarcomas.

Int J Gynecol Pathol 2017 Jul;36(4):386-392

El Camino Hospital (A.R.S., M.K.), Mountain View UCSF (A.E.H., K.G., J.T.R., C.Z.), San Francisco Mills-Peninsula Hospital (M.C.), Burlingame UCSD (O.F.), San Diego Stanford University School of Medicine (A.K.F., T.L.), Stanford Cedars-Sinai Medical Center (J.R.), Los Angeles, CA Cleveland Clinic (A.A.R., J.K.M.), Cleveland, OH New York Presbyterian Hospital (L.H.E.) Memorial-Sloan Kettering Cancer Center (K.P., R.S.), New York, NY Emory University Hospital (K.H.), Atlanta, GA Clinical Pathology Associates (J.H.), Austin UT MD Anderson Cancer Center (A.Y.), Houston, TX Belfast Health and Social Care Trust (W.G.M.), Belfast, Northern Ireland, UK Brigham and Women's Hospital (M.R.N.) Massachusetts General Hospital (E.O.) Harvard Medical School/Beth Israel Deaconess Medical Center (A.H.B.), Boston, MA Yale School of Medicine (V.P.), New Haven, CT UAMS (C.M.Q.), Little Rock, AK Johns Hopkins Hospital (R.V.), Baltimore, MD.

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http://dx.doi.org/10.1097/PGP.0000000000000329DOI Listing
July 2017

Continuous measurement of breast tumour hormone receptor expression: a comparison of two computational pathology platforms.

J Clin Pathol 2017 May 11;70(5):428-434. Epub 2016 Oct 11.

Channing Division of Network Medicine, Brigham and Women's Hospital & Harvard Medical School, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1136/jclinpath-2016-204107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5763511PMC
May 2017

AlphaGo, Deep Learning, and the Future of the Human Microscopist.

Arch Pathol Lab Med 2017 05;141(5):619-621

From the Department of Pathology, Brigham and Women's Hospital, Boston, Massachusetts (Drs Granter and Papke); Harvard Medical School, Boston (Drs Granter and Beck); and the Department of Pathology, Beth Israel Deaconess Hospital, Boston (Dr Beck).

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http://dx.doi.org/10.5858/arpa.2016-0471-EDDOI Listing
May 2017

Straw Men, Deep Learning, and the Future of the Human Microscopist: Response to "Artificial Intelligence and the Pathologist: Future Frenemies?"

Arch Pathol Lab Med 2017 05;141(5):624

From the Department of Pathology, Brigham and Women's Hospital, Boston, Massachusetts (Drs Granter and Papke); Harvard Medical School, Boston (Drs Granter and Beck); and the Department of Pathology, Beth Israel Deaconess Hospital, Boston (Dr Beck).

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http://dx.doi.org/10.5858/arpa.2017-0023-EDDOI Listing
May 2017

Urinary Melatonin in Relation to Postmenopausal Breast Cancer Risk According to Melatonin 1 Receptor Status.

Cancer Epidemiol Biomarkers Prev 2017 03 9;26(3):413-419. Epub 2016 Nov 9.

Channing Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, Massachusetts.

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http://dx.doi.org/10.1158/1055-9965.EPI-16-0630DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5336486PMC
March 2017

EZH2 protein expression in normal breast epithelium and risk of breast cancer: results from the Nurses' Health Studies.

Breast Cancer Res 2017 03 2;19(1):21. Epub 2017 Mar 2.

Cancer Research Institute, Beth Israel Deaconess Cancer Center, Boston, 02215, MA, USA.

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http://dx.doi.org/10.1186/s13058-017-0817-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5335498PMC
March 2017

Aspirin Suppresses Growth in PI3K-Mutant Breast Cancer by Activating AMPK and Inhibiting mTORC1 Signaling.

Cancer Res 2017 02 9;77(3):790-801. Epub 2016 Dec 9.

Department of Pathology and Cancer Center, Beth Israel Deaconess Medical Center, Boston, Massachusetts.

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http://dx.doi.org/10.1158/0008-5472.CAN-16-2400DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5290090PMC
February 2017

Crowdsourcing scoring of immunohistochemistry images: Evaluating Performance of the Crowd and an Automated Computational Method.

Sci Rep 2017 02 23;7:43286. Epub 2017 Feb 23.

Beth Israel Deaconess Medical Center, Harvard Medical School, Department of Pathology, Boston, 02115, USA.

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http://dx.doi.org/10.1038/srep43286DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5322394PMC
February 2017

Precision Cancer Diagnostics: Tracking Genomic Evolution in Clinical Trials.

PLoS Med 2016 Dec 6;13(12):e1002177. Epub 2016 Dec 6.

Department of Pathology and Cancer Research Institute, Beth Israel Deaconess Cancer Center, Boston, Massachusetts, United States of America.

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http://dx.doi.org/10.1371/journal.pmed.1002177DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5140044PMC
December 2016

A BRCA1/2 Mutational Signature and Survival in Ovarian High-Grade Serous Carcinoma.

Cancer Epidemiol Biomarkers Prev 2016 11 5;25(11):1511-1516. Epub 2016 Aug 5.

Department of Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts.

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http://dx.doi.org/10.1158/1055-9965.EPI-16-0286DOI Listing
November 2016

Safikhani et al. reply.

Nature 2016 11;540(7631):E6-E8

Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario M5G 2M9, Canada.

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http://dx.doi.org/10.1038/nature20172DOI Listing
November 2016

Safikhani et al. reply.

Nature 2016 11;540(7631):E11-E12

Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario M5G 2M9, Canada.email:

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http://dx.doi.org/10.1038/nature20581DOI Listing
November 2016

Safikhani et al. reply.

Nature 2016 11;540(7631):E2-E4

Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario M5G 2M9, Canada.

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http://dx.doi.org/10.1038/nature19839DOI Listing
November 2016

Expression of estrogen receptor, progesterone receptor, and Ki67 in normal breast tissue in relation to subsequent risk of breast cancer.

NPJ Breast Cancer 2016 26;2. Epub 2016 Oct 26.

Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, MA, USA; Channing Division of Network Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, USA.

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http://dx.doi.org/10.1038/npjbcancer.2016.32DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5243126PMC
October 2016

Region of interest identification and diagnostic agreement in breast pathology.

Mod Pathol 2016 09 20;29(9):1004-11. Epub 2016 May 20.

Department of Medicine, University of Washington School of Medicine, Seattle, WA, USA.

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http://dx.doi.org/10.1038/modpathol.2016.85DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6436917PMC
September 2016

Plasma 25-Hydroxyvitamin D and Risk of Breast Cancer in Women Followed over 20 Years.

Cancer Res 2016 09 16;76(18):5423-30. Epub 2016 Aug 16.

Channing Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, Massachusetts. Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, Massachusetts. Department of Biostatistics and Epidemiology, School of Public Health and Health Sciences, University of Massachusetts, Amherst, Massachusetts .

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http://dx.doi.org/10.1158/0008-5472.CAN-16-0353DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5026605PMC
September 2016

Height and Body Size in Childhood, Adolescence, and Young Adulthood and Breast Cancer Risk According to Molecular Subtype in the Nurses' Health Studies.

Cancer Prev Res (Phila) 2016 Sep;9(9):732-8

Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, Massachusetts. Channing Division of Network Medicine, Brigham and Women's Hospital, Boston, Massachusetts.

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http://dx.doi.org/10.1158/1940-6207.CAPR-16-0085DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5012307PMC
September 2016

TNF-α expression, risk factors, and inflammatory exposures in ovarian cancer: evidence for an inflammatory pathway of ovarian carcinogenesis?

Hum Pathol 2016 08 8;54:82-91. Epub 2016 Apr 8.

Department of Epidemiology, Harvard T. H. Chan School of Public Health, Boston, MA 02215; Obstetrics and Gynecology Epidemiology Center, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02215.

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http://dx.doi.org/10.1016/j.humpath.2016.03.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4938714PMC
August 2016

Antibody Therapy Targeting CD47 and CD271 Effectively Suppresses Melanoma Metastasis in Patient-Derived Xenografts.

Cell Rep 2016 08 28;16(6):1701-1716. Epub 2016 Jul 28.

Department of Molecular Biology and Biochemistry, Sue and Bill Gross Stem Cell Research Center, University of California, Irvine, Irvine, CA 92627, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2016.07.004DOI Listing
August 2016

Image-guided Coring for Large-scale Studies in Molecular Pathology.

Appl Immunohistochem Mol Morphol 2016 07;24(6):431-5

*Department of Pathology and Cancer Research Institute, Beth Israel Deaconess Medical Center †Department of Medicine, Channing Division of Network Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA.

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http://dx.doi.org/10.1097/PAI.0000000000000211DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4715808PMC
July 2016

Reproductive risk factors in relation to molecular subtypes of breast cancer: Results from the nurses' health studies.

Int J Cancer 2016 May 8;138(10):2346-56. Epub 2016 Feb 8.

Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, MA.

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http://dx.doi.org/10.1002/ijc.29968DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5245093PMC
May 2016

The Novel Marker GATA3 is Significantly More Sensitive Than Traditional Markers Mammaglobin and GCDFP15 for Identifying Breast Cancer in Surgical and Cytology Specimens of Metastatic and Matched Primary Tumors.

Appl Immunohistochem Mol Morphol 2016 Apr;24(4):229-37

*El Camino Hospital Mountain, Department of Pathology, Mountain View, CA †Cell Marque, Rocklin, CA ‡Department of Pathology, Harvard Medical School and Beth Israel Deaconess Medical Center, Boston, MA.

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http://dx.doi.org/10.1097/PAI.0000000000000186DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5610542PMC
April 2016

PharmacoGx: an R package for analysis of large pharmacogenomic datasets.

Bioinformatics 2016 04 9;32(8):1244-6. Epub 2015 Dec 9.

Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada, Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada.

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http://dx.doi.org/10.1093/bioinformatics/btv723DOI Listing
April 2016

Oncogenic Role of Fusion-circRNAs Derived from Cancer-Associated Chromosomal Translocations.

Cell 2016 Apr 31;165(2):289-302. Epub 2016 Mar 31.

Cancer Research Institute, Beth Israel Deaconess Cancer Center, Departments of Medicine and Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02215, USA. Electronic address:

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http://www.cell.com/cell/pdf/S0092-8674(16)30276-8.pdf
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http://www.cell.com/cms/attachment/2052247247/2059675509/mmc
Web Search
http://linkinghub.elsevier.com/retrieve/pii/S009286741630276
Publisher Site
http://dx.doi.org/10.1016/j.cell.2016.03.020DOI Listing
April 2016

Alcohol consumption and risk of breast cancer by molecular subtype: Prospective analysis of the nurses' health study after 26 years of follow-up.

Int J Cancer 2016 Mar 5;138(5):1094-101. Epub 2015 Oct 5.

Channing Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, 02115.

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http://dx.doi.org/10.1002/ijc.29861DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4715769PMC
March 2016

EMDomics: a robust and powerful method for the identification of genes differentially expressed between heterogeneous classes.

Bioinformatics 2016 Feb 29;32(4):533-41. Epub 2015 Oct 29.

Department of Pathology and Cancer Research Institute, Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, MA, USA.

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http://dx.doi.org/10.1093/bioinformatics/btv634DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4743632PMC
February 2016

Healthy dietary patterns and risk of breast cancer by molecular subtype.

Breast Cancer Res Treat 2016 Feb 12;155(3):579-88. Epub 2016 Feb 12.

Channing Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, 909 Fee Road, Boston, MA, 02115, USA.

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http://dx.doi.org/10.1007/s10549-016-3706-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4770904PMC
February 2016

Systematic Analysis of Sex-Linked Molecular Alterations and Therapies in Cancer.

Sci Rep 2016 Jan 12;6:19119. Epub 2016 Jan 12.

Department of Pathology, Beth Israel Deaconess Medical Center and Harvard Medical School, MA.

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http://dx.doi.org/10.1038/srep19119DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4709570PMC
January 2016

Alcohol Consumption and Risk of Breast Cancer by Tumor Receptor Expression.

Horm Cancer 2015 Dec 18;6(5-6):237-46. Epub 2015 Sep 18.

Department of Biostatistics and Epidemiology, School of Public Health and Health Sciences, University of Massachusetts Amherst, 715 N Pleasant Street, Amherst, MA, 01003, USA.

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http://dx.doi.org/10.1007/s12672-015-0235-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4631632PMC
December 2015

Postmenopausal mammographic breast density and subsequent breast cancer risk according to selected tissue markers.

Br J Cancer 2015 Sep 3;113(7):1104-13. Epub 2015 Sep 3.

Department of Epidemiology, Harvard School of Public Health, 181 Longwood Avenue, Boston, MA 02115, USA.

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http://dx.doi.org/10.1038/bjc.2015.315DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4651128PMC
September 2015

SPOP Promotes Ubiquitination and Degradation of the ERG Oncoprotein to Suppress Prostate Cancer Progression.

Mol Cell 2015 Sep 3;59(6):917-30. Epub 2015 Sep 3.

Department of Pathology, Cancer Research Institute, Beth Israel Deaconess Cancer Center, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02215, USA. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2015.07.026DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4575912PMC
September 2015

Adult body size and physical activity in relation to risk of breast cancer according to tumor androgen receptor status.

Cancer Epidemiol Biomarkers Prev 2015 Jun 8;24(6):962-8. Epub 2015 Apr 8.

Channing Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, Massachusetts. Department of Epidemiology, Harvard School of Public Health, Boston, Massachusetts. Division of Biostatistics and Epidemiology, School of Public Health and Health Sciences, University of Massachusetts, Amherst, Massachusetts.

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http://dx.doi.org/10.1158/1055-9965.EPI-14-1429DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4452447PMC
June 2015

MERIT40 Is an Akt Substrate that Promotes Resolution of DNA Damage Induced by Chemotherapy.

Cell Rep 2015 Jun 28;11(9):1358-66. Epub 2015 May 28.

Departments of Pathology and Medicine and Cancer Center, Beth Israel Deaconess Medical Center (BIDMC), Harvard Medical School, Boston, MA 02215, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2015.05.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4464897PMC
June 2015

Noninvasive imaging of tumor burden and molecular pathways in mouse models of cancer.

Cold Spring Harb Protoc 2015 Feb 2;2015(2):135-44. Epub 2015 Feb 2.

Department of Pediatrics, Columbia University Medical Center, New York, New York 10032.

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http://dx.doi.org/10.1101/pdb.top069930DOI Listing
February 2015

Open access to large scale datasets is needed to translate knowledge of cancer heterogeneity into better patient outcomes.

Authors:
Andrew H Beck

PLoS Med 2015 Feb 24;12(2):e1001794. Epub 2015 Feb 24.

Cancer Research Institute, Beth Israel Deaconess Cancer Center, Department of Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts, United States of America.

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http://dx.doi.org/10.1371/journal.pmed.1001794DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4339838PMC
February 2015

Etiologic field effect: reappraisal of the field effect concept in cancer predisposition and progression.

Mod Pathol 2015 Jan 13;28(1):14-29. Epub 2014 Jun 13.

1] Department of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA [2] Department of Epidemiology, Harvard School of Public Health, Boston, MA, USA [3] Department of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.

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http://dx.doi.org/10.1038/modpathol.2014.81DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4265316PMC
January 2015

Association of H3K9me3 and H3K27me3 repressive histone marks with breast cancer subtypes in the Nurses' Health Study.

Breast Cancer Res Treat 2014 Oct 16;147(3):639-51. Epub 2014 Sep 16.

Channing Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, USA.

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http://dx.doi.org/10.1007/s10549-014-3089-1DOI Listing
October 2014

Enhancing reproducibility in cancer drug screening: how do we move forward?

Cancer Res 2014 Aug 11;74(15):4016-23. Epub 2014 Jul 11.

Princess Margaret Cancer Centre, University Health Network; Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada;

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http://dx.doi.org/10.1158/0008-5472.CAN-14-0725DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4119520PMC
August 2014

The reprogramming of tumor stroma by HSF1 is a potent enabler of malignancy.

Cell 2014 Jul;158(3):564-78

Whitehead Institute for Biomedical Research, Cambridge, MA 02142, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02142, USA; Howard Hughes Medical Institute, Cambridge, MA 02142, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00928674140080
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http://dx.doi.org/10.1016/j.cell.2014.05.045DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4249939PMC
July 2014

A diverse array of cancer-associated MTOR mutations are hyperactivating and can predict rapamycin sensitivity.

Cancer Discov 2014 May 14;4(5):554-63. Epub 2014 Mar 14.

1Whitehead Institute for Biomedical Research; 2Howard Hughes Medical Institute and Department of Biology, MIT; 3Broad Institute of Harvard and MIT; 4The David H. Koch Institute for Integrative Cancer Research at MIT, Cambridge; 5Department of Pathology, Massachusetts General Hospital Cancer Center; and 6Department of Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts.

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http://dx.doi.org/10.1158/2159-8290.CD-13-0929DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4012430PMC
May 2014

The adherens junction protein afadin is an AKT substrate that regulates breast cancer cell migration.

Mol Cancer Res 2014 Mar 22;12(3):464-76. Epub 2013 Nov 22.

Department of Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02115.

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http://dx.doi.org/10.1158/1541-7786.MCR-13-0398DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3962723PMC
March 2014

Targeting Akt3 signaling in triple-negative breast cancer.

Cancer Res 2014 Feb 12;74(3):964-73. Epub 2013 Dec 12.

Authors' Affiliations: Department of Pathology, Beth Israel Deaconess Medical Center; Department of Medicine, Harvard Medical School; Department of Medical Oncology, Dana-Farber Cancer Institute; and Department of Medicine, Brigham and Women's Hospital, Boston, Massachusetts.

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http://dx.doi.org/10.1158/0008-5472.CAN-13-2175DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3946502PMC
February 2014

Importance of collection in gene set enrichment analysis of drug response in cancer cell lines.

Sci Rep 2014 Feb 13;4:4092. Epub 2014 Feb 13.

1] Bioinformatics and Computational Genomics Laboratory, Institut de Recherches Cliniques de Montréal, University of Montreal, Montreal, Quebec, Canada [2] Ontario Cancer Institute, Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada.

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http://dx.doi.org/10.1038/srep04092DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3923229PMC
February 2014

Molecular pathological analysis of sarcomas using paraffin-embedded tissue: current limitations and future possibilities.

Histopathology 2014 Jan 25;64(1):163-70. Epub 2013 Nov 25.

Department of Pathology, Stanford University Medical Center, Stanford, CA, USA.

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http://dx.doi.org/10.1111/his.12290DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4847136PMC
January 2014

Inconsistency in large pharmacogenomic studies.

Nature 2013 Dec 27;504(7480):389-93. Epub 2013 Nov 27.

1] Department of Biostatistics and Computational Biology and Center for Cancer Computational Biology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA [2] Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA [3].

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http://dx.doi.org/10.1038/nature12831DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4237165PMC
December 2013

Characterization and analysis of the composition and dynamics of the mammalian riboproteome.

Cell Rep 2013 Sep 19;4(6):1276-87. Epub 2013 Sep 19.

Cancer Genetics Program, Department of Medicine and Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02215, USA.

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http://dx.doi.org/10.1016/j.celrep.2013.08.014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3845203PMC
September 2013

Significance analysis of prognostic signatures.

PLoS Comput Biol 2013 24;9(1):e1002875. Epub 2013 Jan 24.

Department of Pathology, Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, Massachusetts, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1002875DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3554539PMC
June 2013

p16 is superior to ProEx C in identifying high-grade squamous intraepithelial lesions (HSIL) of the anal canal.

Am J Surg Pathol 2013 May;37(5):659-68

Department of Pathology, Division of Infectious Diseases and Geographic Medicine, Stanford University School of Medicine, Stanford, CA, USA.

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http://dx.doi.org/10.1097/PAS.0b013e31828706c0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4847144PMC
May 2013

Ogino et Al. Respond to "the 21st century epidemiologist".

Am J Epidemiol 2012 Oct 30;176(8):672-4. Epub 2012 Aug 30.

Cancer Epidemiology Program, Dana-Farber/Harvard Cancer Center, 450 Brookline Ave., Room JF-215C, Boston, MA 02215, USA.

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https://academic.oup.com/aje/article-lookup/doi/10.1093/aje/
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http://dx.doi.org/10.1093/aje/kws229DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3571249PMC
October 2012

Interdisciplinary education to integrate pathology and epidemiology: towards molecular and population-level health science.

Am J Epidemiol 2012 Oct 30;176(8):659-67. Epub 2012 Aug 30.

Cancer Epidemiology Program, Dana-Farber/Harvard Cancer Center, 450 Brookline Ave., Room JF-215C, Boston, MA 02215, USA.

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https://academic.oup.com/aje/article-lookup/doi/10.1093/aje/
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http://dx.doi.org/10.1093/aje/kws226DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3571252PMC
October 2012

Evaluation of ProExC as a prognostic marker in oropharyngeal squamous cell carcinomas.

Am J Surg Pathol 2012 Aug;36(8):1158-64

Department of Pathology, Stanford University School of Medicine, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1097/PAS.0b013e3182600eaaDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3397679PMC
August 2012

Systematic analysis of breast cancer morphology uncovers stromal features associated with survival.

Sci Transl Med 2011 Nov;3(108):108ra113

Department of Pathology, Stanford University School of Medicine, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1126/scitranslmed.3002564DOI Listing
November 2011