Andrew G Clark

Andrew G Clark

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Female Genetic Contributions to Sperm Competition in .

Genetics 2019 07 17;212(3):789-800. Epub 2019 May 17.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853-2703

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http://dx.doi.org/10.1534/genetics.119.302284DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6614900PMC
July 2019

Sexual conflict through mother's curse and father's curse.

Theor Popul Biol 2019 May 2. Epub 2019 May 2.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY, 14583, USA; Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY, 14853, USA. Electronic address:

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http://dx.doi.org/10.1016/j.tpb.2018.12.007DOI Listing
May 2019

Maximum Likelihood Estimation of Fitness Components in Experimental Evolution.

Genetics 2019 03 24;211(3):1005-1017. Epub 2019 Jan 24.

Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, New York 14853

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http://dx.doi.org/10.1534/genetics.118.301893DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6404243PMC
March 2019

Demographic History of the Human Commensal Drosophila melanogaster.

Genome Biol Evol 2019 03;11(3):844-854

Department of Molecular Biology and Genetics, Cornell University.

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http://dx.doi.org/10.1093/gbe/evz022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6430986PMC
March 2019

Cancer cells in the tumor core exhibit spatially coordinated migration patterns.

J Cell Sci 2019 Mar 15;132(6). Epub 2019 Mar 15.

Institut Curie, PSL Research University, CNRS, UMR 144 - Cell Biology and Cancer, 75005 Paris, France.

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http://dx.doi.org/10.1242/jcs.220277DOI Listing
March 2019

Allele frequency dynamics in a pedigreed natural population.

Proc Natl Acad Sci U S A 2019 02 31;116(6):2158-2164. Epub 2018 Dec 31.

Center for Population Biology, University of California, Davis, CA 95616.

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http://dx.doi.org/10.1073/pnas.1813852116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6369762PMC
February 2019

Overexpression of a glutathione S-transferase (Mdgst) and a galactosyltransferase-like gene (Mdgt1) is responsible for imidacloprid resistance in house flies.

Pest Manag Sci 2019 Jan 28;75(1):37-44. Epub 2018 Aug 28.

Department of Entomology, Comstock Hall, Cornell University, Ithaca, NY, USA.

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http://dx.doi.org/10.1002/ps.5125DOI Listing
January 2019

Molecular safeguarding of CRISPR gene drive experiments.

Elife 2019 Jan 22;8. Epub 2019 Jan 22.

Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, United States.

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http://dx.doi.org/10.7554/eLife.41439DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6358215PMC
January 2019

3D cell migration in the presence of chemical gradients using microfluidics.

Methods Cell Biol 2018 22;147:133-147. Epub 2018 Aug 22.

Institut Curie, PSL Research University, CNRS, UMR 144, Paris, France.

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http://dx.doi.org/10.1016/bs.mcb.2018.06.007DOI Listing
December 2018

Allele-specific expression elucidates cis-regulatory logic.

PLoS Genet 2018 11 1;14(11):e1007690. Epub 2018 Nov 1.

Molecular Biology and Genetics, Cornell University, Ithaca, New York, United States of America.

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http://dx.plos.org/10.1371/journal.pgen.1007690
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http://dx.doi.org/10.1371/journal.pgen.1007690DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6211629PMC
November 2018

Selfish genetic elements.

PLoS Genet 2018 11 15;14(11):e1007700. Epub 2018 Nov 15.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY.

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http://dx.doi.org/10.1371/journal.pgen.1007700DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6237296PMC
November 2018

Rates and Patterns of Mutation in Tandem Repetitive DNA in Six Independent Lineages of Chlamydomonas reinhardtii.

Genome Biol Evol 2018 07;10(7):1673-1686

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York.

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http://dx.doi.org/10.1093/gbe/evy123DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6041958PMC
July 2018

Reducing resistance allele formation in CRISPR gene drive.

Proc Natl Acad Sci U S A 2018 05 7;115(21):5522-5527. Epub 2018 May 7.

Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY 14853;

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http://dx.doi.org/10.1073/pnas.1720354115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6003519PMC
May 2018

Variable Rates of Simple Satellite Gains across the Drosophila Phylogeny.

Mol Biol Evol 2018 04;35(4):925-941

Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY.

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http://dx.doi.org/10.1093/molbev/msy005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5888958PMC
April 2018

Satellite DNA evolution: old ideas, new approaches.

Curr Opin Genet Dev 2018 04 23;49:70-78. Epub 2018 Mar 23.

Department of Molecular Biology and Genetics, Cornell University, 526 Campus Rd, Ithaca, NY 14853, United States. Electronic address:

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http://dx.doi.org/10.1016/j.gde.2018.03.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5975084PMC
April 2018

Reshaping the Energy Landscape Transforms the Mechanism and Binding Kinetics of DNA Threading Intercalation.

Biochemistry 2018 02 5;57(5):614-619. Epub 2018 Jan 5.

Department of Physics, Northeastern University , Boston, Massachusetts 02115, United States.

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http://dx.doi.org/10.1021/acs.biochem.7b01036DOI Listing
February 2018

The human microbiome in evolution.

BMC Biol 2017 12 27;15(1):127. Epub 2017 Dec 27.

Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.

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https://bmcbiol.biomedcentral.com/articles/10.1186/s12915-01
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http://dx.doi.org/10.1186/s12915-017-0454-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5744394PMC
December 2017

Estimating mating rates in wild Drosophila melanogaster females by decay rates of male reproductive proteins in their reproductive tracts.

Mol Ecol Resour 2017 Nov 24;17(6):1202-1209. Epub 2017 Mar 24.

Department of Biological Sciences, Binghamton University, Binghamton, NY, 13902, USA.

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http://dx.doi.org/10.1111/1755-0998.12661DOI Listing
November 2017

Cancer-associated fibroblasts lead tumor invasion through integrin-β3-dependent fibronectin assembly.

J Cell Biol 2017 11 20;216(11):3509-3520. Epub 2017 Sep 20.

Institut Curie, Paris Sciences et Lettres Research University, Centre National de la Recherche Scientifique, UMR 144, Paris, France.

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http://dx.doi.org/10.1083/jcb.201702033DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5674886PMC
November 2017

Variation in Position Effect Variegation Within a Natural Population.

Genetics 2017 11 20;207(3):1157-1166. Epub 2017 Sep 20.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853.

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http://dx.doi.org/10.1534/genetics.117.300306DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5676239PMC
November 2017

The Relationship Between the Human Genome and Microbiome Comes into View.

Annu Rev Genet 2017 11 20;51:413-433. Epub 2017 Sep 20.

Department of Microbiome Science, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany; email:

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http://dx.doi.org/10.1146/annurev-genet-110711-155532DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5744868PMC
November 2017

A tuneable microfluidic system for long duration chemotaxis experiments in a 3D collagen matrix.

Lab Chip 2017 11;17(22):3851-3861

Laboratoire Colloïdes et Matériaux Divisés, CNRS UMR 8231, Chemistry Biology & Innovation, ESPCI Paris, PSL Research University, 10 rue Vauquelin, F-75005 Paris, France.

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http://dx.doi.org/10.1039/c7lc00649gDOI Listing
November 2017

Genomic signatures of local adaptation in the Drosophila immune response.

Fly (Austin) 2017 10 6;11(4):277-283. Epub 2017 Jun 6.

a Department of Molecular Biology and Genetics , Cornell University , Ithaca , NY.

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http://dx.doi.org/10.1080/19336934.2017.1337612DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5721942PMC
October 2017

Selection Constrains High Rates of Tandem Repetitive DNA Mutation in .

Genetics 2017 10 15;207(2):697-710. Epub 2017 Aug 15.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14850.

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http://dx.doi.org/10.1534/genetics.117.300146DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5629333PMC
October 2017

Roles of Female and Male Genotype in Post-Mating Responses in Drosophila melanogaster.

J Hered 2017 10;108(7):740-753

Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853-2703.

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http://dx.doi.org/10.1093/jhered/esx081DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5892397PMC
October 2017

Evolutionary Dynamics of Male Reproductive Genes in the Subgroup.

G3 (Bethesda) 2017 09 7;7(9):3145-3155. Epub 2017 Sep 7.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853.

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http://dx.doi.org/10.1534/g3.117.1136DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5592939PMC
September 2017

Drosophila Genotype Influences Commensal Bacterial Levels.

PLoS One 2017 17;12(1):e0170332. Epub 2017 Jan 17.

Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, New York, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0170332PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5240971PMC
August 2017

Deconstructing isolation-by-distance: The genomic consequences of limited dispersal.

PLoS Genet 2017 Aug 3;13(8):e1006911. Epub 2017 Aug 3.

Cornell Laboratory of Ornithology, Cornell University, Ithaca, New York, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1006911DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5542401PMC
August 2017

Novel CRISPR/Cas9 gene drive constructs reveal insights into mechanisms of resistance allele formation and drive efficiency in genetically diverse populations.

PLoS Genet 2017 07 20;13(7):e1006796. Epub 2017 Jul 20.

Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1006796DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5518997PMC
July 2017

Actin cortex architecture regulates cell surface tension.

Nat Cell Biol 2017 Jun 22;19(6):689-697. Epub 2017 May 22.

MRC Laboratory for Molecular Cell Biology, University College London, London WC1E 6BT, UK.

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http://www.nature.com/doifinder/10.1038/ncb3525
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http://dx.doi.org/10.1038/ncb3525DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5536221PMC
June 2017

Rapid Expansion of Immune-Related Gene Families in the House Fly, Musca domestica.

Mol Biol Evol 2017 04;34(4):857-872

Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY.

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http://dx.doi.org/10.1093/molbev/msw285DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5400391PMC
April 2017

Evolution of Resistance Against CRISPR/Cas9 Gene Drive.

Genetics 2017 02 10;205(2):827-841. Epub 2016 Dec 10.

Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, New York 14853

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http://dx.doi.org/10.1534/genetics.116.197285DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5289854PMC
February 2017

Survey of Global Genetic Diversity Within the Drosophila Immune System.

Genetics 2017 01 4;205(1):353-366. Epub 2016 Nov 4.

Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, New York 14853.

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http://dx.doi.org/10.1534/genetics.116.195016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5223513PMC
January 2017

Integrative modelling of tumour DNA methylation quantifies the contribution of metabolism.

Nat Commun 2016 12 14;7:13666. Epub 2016 Dec 14.

Duke Cancer Institute, Duke University School of Medicine, Durham, North Carolina 27710, USA.

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http://dx.doi.org/10.1038/ncomms13666DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5171841PMC
December 2016

Integrated network analysis reveals distinct regulatory roles of transcription factors and microRNAs.

RNA 2016 11 7;22(11):1663-1672. Epub 2016 Sep 7.

Weill Institute for Cell and Molecular Biology, Cornell University, Ithaca, New York 14853, USA.

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http://dx.doi.org/10.1261/rna.048025.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5066619PMC
November 2016

Genomic Consequences of Population Decline in the Endangered Florida Scrub-Jay.

Curr Biol 2016 11 13;26(21):2974-2979. Epub 2016 Oct 13.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA; Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, NY 14853, USA.

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http://dx.doi.org/10.1016/j.cub.2016.08.062DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5102777PMC
November 2016

Heritable components of the human fecal microbiome are associated with visceral fat.

Genome Biol 2016 Sep 26;17(1):189. Epub 2016 Sep 26.

Department of Twin Research & Genetic Epidemiology, King's College London, St Thomas' Hospital, 3rd Floor, South Wing, Block D, London, SE1 7EH, UK.

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http://dx.doi.org/10.1186/s13059-016-1052-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5036307PMC
September 2016

Allele-Specific Transcriptome and Methylome Analysis Reveals Stable Inheritance and Cis-Regulation of DNA Methylation in Nasonia.

PLoS Biol 2016 Jul 5;14(7):e1002500. Epub 2016 Jul 5.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York, United States of America.

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http://dx.doi.org/10.1371/journal.pbio.1002500DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4933354PMC
July 2016

Evidence for the fixation of gene duplications by positive selection in Drosophila.

Genome Res 2016 06 12;26(6):787-98. Epub 2016 Apr 12.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853-2703, USA;

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http://genome.cshlp.org/lookup/doi/10.1101/gr.199323.115
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http://dx.doi.org/10.1101/gr.199323.115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4889967PMC
June 2016

Extensive local adaptation within the chemosensory system following Drosophila melanogaster's global expansion.

Nat Commun 2016 06 13;7:ncomms11855. Epub 2016 Jun 13.

Center for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, CH-1015 Lausanne, Switzerland.

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http://dx.doi.org/10.1038/ncomms11855DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4910016PMC
June 2016

Genetic Determinants of the Gut Microbiome in UK Twins.

Cell Host Microbe 2016 May;19(5):731-43

Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14850, USA; Department of Microbiome Science, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.chom.2016.04.017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4915943PMC
May 2016

Cross-species comparisons of host genetic associations with the microbiome.

Science 2016 Apr;352(6285):532-5

Department of Molecular Biology and Genetics, Cornell University, Ithaca NY, USA. Department of Microbiology, Cornell University, Ithaca NY, USA. Department of Microbiome Science, Max Planck Institute for Developmental Biology, Tübingen, Germany.

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http://dx.doi.org/10.1126/science.aad9379DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5116907PMC
April 2016

Population genomic analysis of 962 whole genome sequences of humans reveals natural selection in non-coding regions.

PLoS One 2015 25;10(3):e0121644. Epub 2015 Mar 25.

Human Genome Sequencing Center, Molecular and Human Genetics Department, Baylor College of Medicine, Houston, Texas, United States of America; Human Genetic Center, University of Texas Health Science Center, Houston, Texas, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0121644PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4373932PMC
March 2016

Strong Constraint on Human Genes Escaping X-Inactivation Is Modulated by their Expression Level and Breadth in Both Sexes.

Mol Biol Evol 2016 Feb 22;33(2):384-93. Epub 2015 Oct 22.

Department of Biological Statistics and Computational Biology, Cornell University

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http://dx.doi.org/10.1093/molbev/msv225DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4751236PMC
February 2016

Candidate genetic modifiers of retinitis pigmentosa identified by exploiting natural variation in Drosophila.

Hum Mol Genet 2016 Feb 11;25(4):651-9. Epub 2015 Dec 11.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA and.

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http://dx.doi.org/10.1093/hmg/ddv502DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4743685PMC
February 2016

Erratum to: signatures of early frailty in the gut microbiota.

Genome Med 2016 Feb 17;8(1):21. Epub 2016 Feb 17.

Department of Twin Research & Genetic Epidemiology, St Thomas' Hospital Campus, King's College London, 3rd & 4th Floor South Wing Block D, Westminster Bridge Road, London, SE1 7EH, UK.

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http://dx.doi.org/10.1186/s13073-016-0275-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4756408PMC
February 2016

Induction of excessive endoplasmic reticulum stress in the Drosophila male accessory gland results in infertility.

PLoS One 2015 5;10(3):e0119386. Epub 2015 Mar 5.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0119386PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4350844PMC
January 2016

Signatures of early frailty in the gut microbiota.

Genome Med 2016 Jan 29;8(1). Epub 2016 Jan 29.

Department of Twin Research & Genetic Epidemiology, King's College London, St Thomas' Hospital Campus, 3rd & 4th Floor South Wing Block D, Westminster Bridge Road, London, SE1 7EH, UK.

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http://www.twinsuk.ac.uk/wp-content/uploads/2016/03/Erratum-
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http://genomemedicine.com/content/8/1/8
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http://dx.doi.org/10.1186/s13073-016-0262-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4731918PMC
January 2016

TRIM28 Controls Genomic Imprinting through Distinct Mechanisms during and after Early Genome-wide Reprogramming.

Cell Rep 2015 Nov 29;13(6):1194-1205. Epub 2015 Oct 29.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2015.09.078DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4644443PMC
November 2015

Aberrant Time to Most Recent Common Ancestor as a Signature of Natural Selection.

Mol Biol Evol 2015 Oct 20;32(10):2784-97. Epub 2015 Jun 20.

Department of Molecular Biology and Genetics, Cornell University.

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https://academic.oup.com/mbe/article-lookup/doi/10.1093/molb
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http://dx.doi.org/10.1093/molbev/msv142DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4654765PMC
October 2015

Modes of cancer cell invasion and the role of the microenvironment.

Curr Opin Cell Biol 2015 Oct 14;36:13-22. Epub 2015 Jul 14.

Institut Curie, PSL Research University, 75005 Paris, France; CNRS, UMR144, 75005 Paris, France.

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http://dx.doi.org/10.1016/j.ceb.2015.06.004DOI Listing
October 2015

Modeling the Manipulation of Natural Populations by the Mutagenic Chain Reaction.

Genetics 2015 Oct 30;201(2):425-31. Epub 2015 Jul 30.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853 Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, New York 14853.

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http://dx.doi.org/10.1534/genetics.115.177592DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4596658PMC
October 2015

Birth of a new gene on the Y chromosome of Drosophila melanogaster.

Proc Natl Acad Sci U S A 2015 Oct 18;112(40):12450-5. Epub 2015 Sep 18.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853

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http://dx.doi.org/10.1073/pnas.1516543112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4603513PMC
October 2015

Host genetic variation impacts microbiome composition across human body sites.

Genome Biol 2015 Sep 15;16:191. Epub 2015 Sep 15.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY, 14853, USA.

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http://dx.doi.org/10.1186/s13059-015-0759-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4570153PMC
September 2015

Biological knowledge-driven analysis of epistasis in human GWAS with application to lipid traits.

Methods Mol Biol 2015 ;1253:35-45

Department of Animal and Avian Sciences, University of Maryland, Bldg 142, College Park, MD, 20742, USA,

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http://dx.doi.org/10.1007/978-1-4939-2155-3_3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4930274PMC
July 2015

Characterizing male-female interactions using natural genetic variation in Drosophila melanogaster.

J Hered 2015 Jan-Feb;106(1):67-79. Epub 2014 Nov 25.

From the Department of Biological Sciences, Binghamton University, Binghamton, NY (Reinhart, Carney, and Fiumera); and the Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY(Clark).

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http://dx.doi.org/10.1093/jhered/esu076DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4261835PMC
July 2015

Genetic and epigenetic architecture of sex-biased expression in the jewel wasps Nasonia vitripennis and giraulti.

Proc Natl Acad Sci U S A 2015 Jul 22;112(27):E3545-54. Epub 2015 Jun 22.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853; Cornell Center for Comparative and Population Genomics, Cornell University, Ithaca, NY 14853;

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http://www.pnas.org/lookup/doi/10.1073/pnas.1510338112
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http://dx.doi.org/10.1073/pnas.1510338112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4500217PMC
July 2015

Transcriptome Differences between Alternative Sex Determining Genotypes in the House Fly, Musca domestica.

Genome Biol Evol 2015 Jul 2;7(7):2051-61. Epub 2015 Jul 2.

Department of Molecular Biology and Genetics, Cornell University.

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http://dx.doi.org/10.1093/gbe/evv128DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4524491PMC
July 2015

The distribution of fitness effects in an uncertain world.

Evolution 2015 Jun 19;69(6):1610-1618. Epub 2015 May 19.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York, 14853-2703.

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http://dx.doi.org/10.1111/evo.12673DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4716676PMC
June 2015

Estimating the mutation load in human genomes.

Nat Rev Genet 2015 Jun 12;16(6):333-43. Epub 2015 May 12.

McGill University, Department of Human Genetics and Genome Quebec Innovation Centre, 740 Dr Penfield Avenue, Montreal, Quebec H3A 0G1, Canada.

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http://dx.doi.org/10.1038/nrg3931DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4959039PMC
June 2015

Behavioral idiosyncrasy reveals genetic control of phenotypic variability.

Proc Natl Acad Sci U S A 2015 May 7;112(21):6706-11. Epub 2015 May 7.

Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138; Rowland Institute at Harvard, Cambridge, MA 02142; and Center for Brain Science, Harvard University, Cambridge, MA 02138.

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http://dx.doi.org/10.1073/pnas.1503830112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4450409PMC
May 2015

Sex-ratio meiotic drive and Y-linked resistance in Drosophila affinis.

Genetics 2015 Mar 8;199(3):831-40. Epub 2015 Jan 8.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853.

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http://dx.doi.org/10.1534/genetics.114.173948DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4349075PMC
March 2015

The genetic architecture of the genome-wide transcriptional response to ER stress in the mouse.

PLoS Genet 2015 Feb 4;11(2):e1004924. Epub 2015 Feb 4.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1004924DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4412289PMC
February 2015

Global diversity lines - a five-continent reference panel of sequenced Drosophila melanogaster strains.

G3 (Bethesda) 2015 Feb 11;5(4):593-603. Epub 2015 Feb 11.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853 Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, New York 14853

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http://dx.doi.org/10.1534/g3.114.015883DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4390575PMC
February 2015

Host genetic determinants of microbiota-dependent nutrition revealed by genome-wide analysis of Drosophila melanogaster.

Nat Commun 2015 Feb 18;6:6312. Epub 2015 Feb 18.

1] Department of Entomology, Cornell University, Ithaca, New York 14853, USA [2] Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, USA.

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http://dx.doi.org/10.1038/ncomms7312DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4333721PMC
February 2015

Evolutionary genomics. Conundrum of jumbled mosquito genomes.

Science 2015 Jan;347(6217):27-8

Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY 14853, USA.

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http://dx.doi.org/10.1126/science.aaa3600DOI Listing
January 2015

Correlated variation and population differentiation in satellite DNA abundance among lines of Drosophila melanogaster.

Proc Natl Acad Sci U S A 2014 Dec 15;111(52):18793-8. Epub 2014 Dec 15.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853-2703

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http://dx.doi.org/10.1073/pnas.1421951112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4284603PMC
December 2014

Using Mendelian inheritance to improve high-throughput SNP discovery.

Genetics 2014 Nov 5;198(3):847-57. Epub 2014 Sep 5.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853.

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http://dx.doi.org/10.1534/genetics.114.169052DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4224174PMC
November 2014

Human genetics shape the gut microbiome.

Cell 2014 Nov;159(4):789-99

Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA; Department of Microbiology, Cornell University, Ithaca, NY 14853, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2014.09.053DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4255478PMC
November 2014

Positive and purifying selection on the Drosophila Y chromosome.

Mol Biol Evol 2014 Oct 27;31(10):2612-23. Epub 2014 Jun 27.

Department of Molecular Biology and Genetics, Cornell University.

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http://dx.doi.org/10.1093/molbev/msu203DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4166921PMC
October 2014

Characterizing the infection-induced transcriptome of Nasonia vitripennis reveals a preponderance of taxonomically-restricted immune genes.

PLoS One 2013 27;8(12):e83984. Epub 2013 Dec 27.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0083984PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3873987PMC
August 2014

Balancing selection in species with separate sexes: insights from Fisher's geometric model.

Genetics 2014 Jul 8;197(3):991-1006. Epub 2014 May 8.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853.

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http://dx.doi.org/10.1534/genetics.114.165605DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4096376PMC
July 2014

Stresses at the cell surface during animal cell morphogenesis.

Curr Biol 2014 May;24(10):R484-94

MRC Laboratory for Molecular Cell Biology, University College London, UK. Electronic address:

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http://dx.doi.org/10.1016/j.cub.2014.03.059DOI Listing
May 2014

Recent selection on the Y-to-dot translocation in Drosophila pseudoobscura.

Mol Biol Evol 2014 Apr 3;31(4):846-56. Epub 2014 Jan 3.

Molecular Biology and Genetics, Cornell University.

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http://dx.doi.org/10.1093/molbev/msu002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3969560PMC
April 2014

Genetics: The vital Y chromosome.

Authors:
Andrew G Clark

Nature 2014 Apr;508(7497):463-5

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, USA.

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http://dx.doi.org/10.1038/508463aDOI Listing
April 2014

Function and evolution of DNA methylation in Nasonia vitripennis.

PLoS Genet 2013 10;9(10):e1003872. Epub 2013 Oct 10.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York, United States of America ; Cornell Center for Comparative and Population Genomics, Cornell University, Ithaca, New York, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1003872DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3794928PMC
March 2014

Evolutionary inevitability of sexual antagonism.

Proc Biol Sci 2014 Feb 11;281(1776):20132123. Epub 2013 Dec 11.

Department of Molecular Biology and Genetics, Cornell University, , Ithaca, NY 14853, USA.

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http://dx.doi.org/10.1098/rspb.2013.2123DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3871308PMC
February 2014

Distortion of genealogical properties when the sample is very large.

Proc Natl Acad Sci U S A 2014 Feb 27;111(6):2385-90. Epub 2014 Jan 27.

Computer Science Division and Department of Statistics, University of California, Berkeley, CA 94720.

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http://dx.doi.org/10.1073/pnas.1322709111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3926037PMC
February 2014

Neutral genomic regions refine models of recent rapid human population growth.

Proc Natl Acad Sci U S A 2014 Jan 30;111(2):757-62. Epub 2013 Dec 30.

Departments of Biological Statistics and Computational Biology and Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853.

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http://dx.doi.org/10.1073/pnas.1310398110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3896169PMC
January 2014

Genome-wide histone state profiling of fibroblasts from the opossum, Monodelphis domestica, identifies the first marsupial-specific imprinted gene.

BMC Genomics 2014 Jan 31;15:89. Epub 2014 Jan 31.

Department of Veterinary Integrative Biosciences, Texas A&M University, College Station, TX 77843, USA.

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http://dx.doi.org/10.1186/1471-2164-15-89DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3912494PMC
January 2014

Genetic incompatibilities are widespread within species.

Nature 2013 Dec 6;504(7478):135-7. Epub 2013 Nov 6.

Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts 02138, USA.

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http://dx.doi.org/10.1038/nature12678DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4844467PMC
December 2013