Publications by authors named "Andrew E Allen"

80Publications

Common origin of ornithine-urea cycle in opisthokonts and stramenopiles.

Sci Rep 2020 10 7;10(1):16687. Epub 2020 Oct 7.

Biology Centre, Czech Academy of Sciences, Institute of Parasitology, Branišovská 31, 37005, České Budějovice, Czech Republic.

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October 2020

The Importance of Protein Phosphorylation for Signaling and Metabolism in Response to Diel Light Cycling and Nutrient Availability in a Marine Diatom.

Biology (Basel) 2020 Jul 6;9(7). Epub 2020 Jul 6.

Scripps Institution of Oceanography, Integrative Oceanography Division, University of California, San Diego, La Jolla, CA 92037, USA.

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July 2020

Mitochondrial fatty acid β-oxidation is required for storage-lipid catabolism in a marine diatom.

New Phytol 2020 Nov 21;228(3):946-958. Epub 2020 Jul 21.

Department of Biology, Colorado State University, 1878 Campus Delivery, 200 West Lake Street, Fort Collins, CO, 80523, USA.

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November 2020

Comparative transcriptomics of toxin synthesis genes between the non-toxin producing dinoflagellate Cochlodinium polykrikoides and toxigenic Alexandrium pacificum.

Harmful Algae 2020 03 10;93:101777. Epub 2020 Mar 10.

Department of Biotechnology, Sangmyung University, Seoul 03016, South Korea. Electronic address:

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March 2020

Publisher Correction: Genetic tool development in marine protists: emerging model organisms for experimental cell biology.

Authors:
Drahomíra Faktorová R Ellen R Nisbet José A Fernández Robledo Elena Casacuberta Lisa Sudek Andrew E Allen Manuel Ares Cristina Aresté Cecilia Balestreri Adrian C Barbrook Patrick Beardslee Sara Bender David S Booth François-Yves Bouget Chris Bowler Susana A Breglia Colin Brownlee Gertraud Burger Heriberto Cerutti Rachele Cesaroni Miguel A Chiurillo Thomas Clemente Duncan B Coles Jackie L Collier Elizabeth C Cooney Kathryn Coyne Roberto Docampo Christopher L Dupont Virginia Edgcomb Elin Einarsson Pía A Elustondo Fernan Federici Veronica Freire-Beneitez Nastasia J Freyria Kodai Fukuda Paulo A García Peter R Girguis Fatma Gomaa Sebastian G Gornik Jian Guo Vladimír Hampl Yutaka Hanawa Esteban R Haro-Contreras Elisabeth Hehenberger Andrea Highfield Yoshihisa Hirakawa Amanda Hopes Christopher J Howe Ian Hu Jorge Ibañez Nicholas A T Irwin Yuu Ishii Natalia Ewa Janowicz Adam C Jones Ambar Kachale Konomi Fujimura-Kamada Binnypreet Kaur Jonathan Z Kaye Eleanna Kazana Patrick J Keeling Nicole King Lawrence A Klobutcher Noelia Lander Imen Lassadi Zhuhong Li Senjie Lin Jean-Claude Lozano Fulei Luan Shinichiro Maruyama Tamara Matute Cristina Miceli Jun Minagawa Mark Moosburner Sebastián R Najle Deepak Nanjappa Isabel C Nimmo Luke Noble Anna M G Novák Vanclová Mariusz Nowacki Isaac Nuñez Arnab Pain Angela Piersanti Sandra Pucciarelli Jan Pyrih Joshua S Rest Mariana Rius Deborah Robertson Albane Ruaud Iñaki Ruiz-Trillo Monika A Sigg Pamela A Silver Claudio H Slamovits G Jason Smith Brittany N Sprecher Rowena Stern Estienne C Swart Anastasios D Tsaousis Lev Tsypin Aaron Turkewitz Jernej Turnšek Matus Valach Valérie Vergé Peter von Dassow Tobias von der Haar Ross F Waller Lu Wang Xiaoxue Wen Glen Wheeler April Woods Huan Zhang Thomas Mock Alexandra Z Worden Julius Lukeš

Nat Methods 2020 05;17(5):551

Institute of Parasitology, Biology Centre, Czech Academy of Sciences and Faculty of Sciences, University of South Bohemia, České Budějovice, Czech Republic.

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May 2020

Genetic tool development in marine protists: emerging model organisms for experimental cell biology.

Authors:
Drahomíra Faktorová R Ellen R Nisbet José A Fernández Robledo Elena Casacuberta Lisa Sudek Andrew E Allen Manuel Ares Cristina Aresté Cecilia Balestreri Adrian C Barbrook Patrick Beardslee Sara Bender David S Booth François-Yves Bouget Chris Bowler Susana A Breglia Colin Brownlee Gertraud Burger Heriberto Cerutti Rachele Cesaroni Miguel A Chiurillo Thomas Clemente Duncan B Coles Jackie L Collier Elizabeth C Cooney Kathryn Coyne Roberto Docampo Christopher L Dupont Virginia Edgcomb Elin Einarsson Pía A Elustondo Fernan Federici Veronica Freire-Beneitez Nastasia J Freyria Kodai Fukuda Paulo A García Peter R Girguis Fatma Gomaa Sebastian G Gornik Jian Guo Vladimír Hampl Yutaka Hanawa Esteban R Haro-Contreras Elisabeth Hehenberger Andrea Highfield Yoshihisa Hirakawa Amanda Hopes Christopher J Howe Ian Hu Jorge Ibañez Nicholas A T Irwin Yuu Ishii Natalia Ewa Janowicz Adam C Jones Ambar Kachale Konomi Fujimura-Kamada Binnypreet Kaur Jonathan Z Kaye Eleanna Kazana Patrick J Keeling Nicole King Lawrence A Klobutcher Noelia Lander Imen Lassadi Zhuhong Li Senjie Lin Jean-Claude Lozano Fulei Luan Shinichiro Maruyama Tamara Matute Cristina Miceli Jun Minagawa Mark Moosburner Sebastián R Najle Deepak Nanjappa Isabel C Nimmo Luke Noble Anna M G Novák Vanclová Mariusz Nowacki Isaac Nuñez Arnab Pain Angela Piersanti Sandra Pucciarelli Jan Pyrih Joshua S Rest Mariana Rius Deborah Robertson Albane Ruaud Iñaki Ruiz-Trillo Monika A Sigg Pamela A Silver Claudio H Slamovits G Jason Smith Brittany N Sprecher Rowena Stern Estienne C Swart Anastasios D Tsaousis Lev Tsypin Aaron Turkewitz Jernej Turnšek Matus Valach Valérie Vergé Peter von Dassow Tobias von der Haar Ross F Waller Lu Wang Xiaoxue Wen Glen Wheeler April Woods Huan Zhang Thomas Mock Alexandra Z Worden Julius Lukeš

Nat Methods 2020 05 6;17(5):481-494. Epub 2020 Apr 6.

Institute of Parasitology, Biology Centre, Czech Academy of Sciences and Faculty of Sciences, University of South Bohemia, České Budějovice, Czech Republic.

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May 2020

Multiplexed Knockouts in the Model Diatom by Episomal Delivery of a Selectable Cas9.

Front Microbiol 2020 28;11. Epub 2020 Jan 28.

Integrative Oceanography Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, United States.

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January 2020

Reduction-dependent siderophore assimilation in a model pennate diatom.

Proc Natl Acad Sci U S A 2019 11 4;116(47):23609-23617. Epub 2019 Nov 4.

Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA 92093;

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November 2019

Manganese and iron deficiency in Southern Ocean Phaeocystis antarctica populations revealed through taxon-specific protein indicators.

Nat Commun 2019 08 8;10(1):3582. Epub 2019 Aug 8.

Department of Biology, Dalhousie University, 1355 Oxford Street PO Box 15000, Halifax, B3H 4R2, NS, Canada.

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August 2019

Pervasive iron limitation at subsurface chlorophyll maxima of the California Current.

Proc Natl Acad Sci U S A 2018 12 10;115(52):13300-13305. Epub 2018 Dec 10.

Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA 92093;

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December 2018

Biosynthesis of the neurotoxin domoic acid in a bloom-forming diatom.

Science 2018 09;361(6409):1356-1358

Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA 92093, USA.

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September 2018

Downregulation of mitochondrial alternative oxidase affects chloroplast function, redox status and stress response in a marine diatom.

New Phytol 2019 02 22;221(3):1303-1316. Epub 2018 Nov 22.

Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Ecole normale supérieure, CNRS, INSERM, Université PSL, 75005, Paris, France.

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February 2019

Simultaneous quantum yield measurements of carbon uptake and oxygen evolution in microalgal cultures.

PLoS One 2018 19;13(6):e0199125. Epub 2018 Jun 19.

Scripps Institution of Oceanography, University of California San Diego, La Jolla, California, United States of America.

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December 2018