Publications by authors named "Andrew E Allen"

80Publications

Dinoflagellates alter their carbon and nutrient metabolic strategies across environmental gradients in the central Pacific Ocean.

Authors:
Natalie R Cohen Matthew R McIlvin Dawn M Moran Noelle A Held Jaclyn K Saunders Nicholas J Hawco Michael Brosnahan Giacomo R DiTullio Carl Lamborg John P McCrow Chris L Dupont Andrew E Allen Mak A Saito

Nat Microbiol 2021 Jan 4. Epub 2021 Jan 4.

Marine Chemistry and Geochemistry Department, Woods Hole Oceanographic Institution, Woods Hole, MA, USA.

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January 2021

Revealing ocean-scale biochemical structure with a deep-diving vertical profiling autonomous vehicle.

Authors:
John A Breier Michael V Jakuba Mak A Saito Gregory J Dick Sharon L Grim Eric W Chan Matthew R McIlvin Dawn M Moran Brianna A Alanis Andrew E Allen Chris L Dupont Rod Johnson

Sci Robot 2020 Nov;5(48)

Bermuda Institute of Ocean Sciences, St. George's, GE 01, Bermuda.

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November 2020

Common origin of ornithine-urea cycle in opisthokonts and stramenopiles.

Authors:
Aleš Horák Andrew E Allen Miroslav Oborník

Sci Rep 2020 10 7;10(1):16687. Epub 2020 Oct 7.

Biology Centre, Czech Academy of Sciences, Institute of Parasitology, Branišovská 31, 37005, České Budějovice, Czech Republic.

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October 2020

The Importance of Protein Phosphorylation for Signaling and Metabolism in Response to Diel Light Cycling and Nutrient Availability in a Marine Diatom.

Authors:
Maxine H Tan Sarah R Smith Kim K Hixson Justin Tan James K McCarthy Adam B Kustka Andrew E Allen

Biology (Basel) 2020 Jul 6;9(7). Epub 2020 Jul 6.

Scripps Institution of Oceanography, Integrative Oceanography Division, University of California, San Diego, La Jolla, CA 92037, USA.

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July 2020

Sierra Nevada mountain lake microbial communities are structured by temperature, resources and geographic location.

Authors:
Marika A Schulhof Andrew E Allen Eric E Allen Natalie Mladenov John P McCrow Natalie T Jones Jessica Blanton Hamanda B Cavalheri Drishti Kaul Celia C Symons Jonathan B Shurin

Mol Ecol 2020 06 24;29(11):2080-2093. Epub 2020 Jun 24.

Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA.

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June 2020

Mitochondrial fatty acid β-oxidation is required for storage-lipid catabolism in a marine diatom.

Authors:
Denis Jallet Denghui Xing Alexander Hughes Mark Moosburner Mark P Simmons Andrew E Allen Graham Peers

New Phytol 2020 Nov 21;228(3):946-958. Epub 2020 Jul 21.

Department of Biology, Colorado State University, 1878 Campus Delivery, 200 West Lake Street, Fort Collins, CO, 80523, USA.

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November 2020

Comparative transcriptomics of toxin synthesis genes between the non-toxin producing dinoflagellate Cochlodinium polykrikoides and toxigenic Alexandrium pacificum.

Authors:
Hui Wang Ruoyu Guo Weol-Ae Lim Andrew E Allen Jang-Seu Ki

Harmful Algae 2020 03 10;93:101777. Epub 2020 Mar 10.

Department of Biotechnology, Sangmyung University, Seoul 03016, South Korea. Electronic address:

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March 2020

Publisher Correction: Genetic tool development in marine protists: emerging model organisms for experimental cell biology.

Authors:
Drahomíra Faktorová R Ellen R Nisbet José A Fernández Robledo Elena Casacuberta Lisa Sudek Andrew E Allen Manuel Ares Cristina Aresté Cecilia Balestreri Adrian C Barbrook Patrick Beardslee Sara Bender David S Booth François-Yves Bouget Chris Bowler Susana A Breglia Colin Brownlee Gertraud Burger Heriberto Cerutti Rachele Cesaroni Miguel A Chiurillo Thomas Clemente Duncan B Coles Jackie L Collier Elizabeth C Cooney Kathryn Coyne Roberto Docampo Christopher L Dupont Virginia Edgcomb Elin Einarsson Pía A Elustondo Fernan Federici Veronica Freire-Beneitez Nastasia J Freyria Kodai Fukuda Paulo A García Peter R Girguis Fatma Gomaa Sebastian G Gornik Jian Guo Vladimír Hampl Yutaka Hanawa Esteban R Haro-Contreras Elisabeth Hehenberger Andrea Highfield Yoshihisa Hirakawa Amanda Hopes Christopher J Howe Ian Hu Jorge Ibañez Nicholas A T Irwin Yuu Ishii Natalia Ewa Janowicz Adam C Jones Ambar Kachale Konomi Fujimura-Kamada Binnypreet Kaur Jonathan Z Kaye Eleanna Kazana Patrick J Keeling Nicole King Lawrence A Klobutcher Noelia Lander Imen Lassadi Zhuhong Li Senjie Lin Jean-Claude Lozano Fulei Luan Shinichiro Maruyama Tamara Matute Cristina Miceli Jun Minagawa Mark Moosburner Sebastián R Najle Deepak Nanjappa Isabel C Nimmo Luke Noble Anna M G Novák Vanclová Mariusz Nowacki Isaac Nuñez Arnab Pain Angela Piersanti Sandra Pucciarelli Jan Pyrih Joshua S Rest Mariana Rius Deborah Robertson Albane Ruaud Iñaki Ruiz-Trillo Monika A Sigg Pamela A Silver Claudio H Slamovits G Jason Smith Brittany N Sprecher Rowena Stern Estienne C Swart Anastasios D Tsaousis Lev Tsypin Aaron Turkewitz Jernej Turnšek Matus Valach Valérie Vergé Peter von Dassow Tobias von der Haar Ross F Waller Lu Wang Xiaoxue Wen Glen Wheeler April Woods Huan Zhang Thomas Mock Alexandra Z Worden Julius Lukeš

Nat Methods 2020 05;17(5):551

Institute of Parasitology, Biology Centre, Czech Academy of Sciences and Faculty of Sciences, University of South Bohemia, České Budějovice, Czech Republic.

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May 2020

Genetic tool development in marine protists: emerging model organisms for experimental cell biology.

Authors:
Drahomíra Faktorová R Ellen R Nisbet José A Fernández Robledo Elena Casacuberta Lisa Sudek Andrew E Allen Manuel Ares Cristina Aresté Cecilia Balestreri Adrian C Barbrook Patrick Beardslee Sara Bender David S Booth François-Yves Bouget Chris Bowler Susana A Breglia Colin Brownlee Gertraud Burger Heriberto Cerutti Rachele Cesaroni Miguel A Chiurillo Thomas Clemente Duncan B Coles Jackie L Collier Elizabeth C Cooney Kathryn Coyne Roberto Docampo Christopher L Dupont Virginia Edgcomb Elin Einarsson Pía A Elustondo Fernan Federici Veronica Freire-Beneitez Nastasia J Freyria Kodai Fukuda Paulo A García Peter R Girguis Fatma Gomaa Sebastian G Gornik Jian Guo Vladimír Hampl Yutaka Hanawa Esteban R Haro-Contreras Elisabeth Hehenberger Andrea Highfield Yoshihisa Hirakawa Amanda Hopes Christopher J Howe Ian Hu Jorge Ibañez Nicholas A T Irwin Yuu Ishii Natalia Ewa Janowicz Adam C Jones Ambar Kachale Konomi Fujimura-Kamada Binnypreet Kaur Jonathan Z Kaye Eleanna Kazana Patrick J Keeling Nicole King Lawrence A Klobutcher Noelia Lander Imen Lassadi Zhuhong Li Senjie Lin Jean-Claude Lozano Fulei Luan Shinichiro Maruyama Tamara Matute Cristina Miceli Jun Minagawa Mark Moosburner Sebastián R Najle Deepak Nanjappa Isabel C Nimmo Luke Noble Anna M G Novák Vanclová Mariusz Nowacki Isaac Nuñez Arnab Pain Angela Piersanti Sandra Pucciarelli Jan Pyrih Joshua S Rest Mariana Rius Deborah Robertson Albane Ruaud Iñaki Ruiz-Trillo Monika A Sigg Pamela A Silver Claudio H Slamovits G Jason Smith Brittany N Sprecher Rowena Stern Estienne C Swart Anastasios D Tsaousis Lev Tsypin Aaron Turkewitz Jernej Turnšek Matus Valach Valérie Vergé Peter von Dassow Tobias von der Haar Ross F Waller Lu Wang Xiaoxue Wen Glen Wheeler April Woods Huan Zhang Thomas Mock Alexandra Z Worden Julius Lukeš

Nat Methods 2020 05 6;17(5):481-494. Epub 2020 Apr 6.

Institute of Parasitology, Biology Centre, Czech Academy of Sciences and Faculty of Sciences, University of South Bohemia, České Budějovice, Czech Republic.

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May 2020

Multiplexed Knockouts in the Model Diatom by Episomal Delivery of a Selectable Cas9.

Authors:
Mark Andrew Moosburner Pardis Gholami James K McCarthy Maxine Tan Vincent A Bielinski Andrew E Allen

Front Microbiol 2020 28;11. Epub 2020 Jan 28.

Integrative Oceanography Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, United States.

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January 2020

Reduction-dependent siderophore assimilation in a model pennate diatom.

Authors:
Tyler H Coale Mark Moosburner Aleš Horák Miroslav Oborník Katherine A Barbeau Andrew E Allen

Proc Natl Acad Sci U S A 2019 11 4;116(47):23609-23617. Epub 2019 Nov 4.

Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA 92093;

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November 2019

Evolution and regulation of nitrogen flux through compartmentalized metabolic networks in a marine diatom.

Authors:
Sarah R Smith Chris L Dupont James K McCarthy Jared T Broddrick Miroslav Oborník Aleš Horák Zoltán Füssy Jaromír Cihlář Sabrina Kleessen Hong Zheng John P McCrow Kim K Hixson Wagner L Araújo Adriano Nunes-Nesi Alisdair Fernie Zoran Nikoloski Bernhard O Palsson Andrew E Allen

Nat Commun 2019 10 7;10(1):4552. Epub 2019 Oct 7.

Microbial and Environmental Genomics, J. Craig Venter Institute, La Jolla, CA, 92037, USA.

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October 2019

Manganese and iron deficiency in Southern Ocean Phaeocystis antarctica populations revealed through taxon-specific protein indicators.

Authors:
Miao Wu J Scott P McCain Elden Rowland Rob Middag Mats Sandgren Andrew E Allen Erin M Bertrand

Nat Commun 2019 08 8;10(1):3582. Epub 2019 Aug 8.

Department of Biology, Dalhousie University, 1355 Oxford Street PO Box 15000, Halifax, B3H 4R2, NS, Canada.

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August 2019

Silicon limitation facilitates virus infection and mortality of marine diatoms.

Authors:
Chana F Kranzler Jeffrey W Krause Mark A Brzezinski Bethanie R Edwards William P Biggs Michael Maniscalco John P McCrow Benjamin A S Van Mooy Kay D Bidle Andrew E Allen Kimberlee Thamatrakoln

Nat Microbiol 2019 11 15;4(11):1790-1797. Epub 2019 Jul 15.

Department of Marine and Coastal Sciences, Rutgers University, New Brunswick, NJ, USA.

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November 2019

Cross-compartment metabolic coupling enables flexible photoprotective mechanisms in the diatom Phaeodactylum tricornutum.

Authors:
Jared T Broddrick Niu Du Sarah R Smith Yoshinori Tsuji Denis Jallet Maxwell A Ware Graham Peers Yusuke Matsuda Chris L Dupont B Greg Mitchell Bernhard O Palsson Andrew E Allen

New Phytol 2019 05 14;222(3):1364-1379. Epub 2019 Feb 14.

Scripps Institution of Oceanography, UC San Diego, La Jolla, CA, 92093, USA.

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May 2019

Pervasive iron limitation at subsurface chlorophyll maxima of the California Current.

Authors:
Shane L Hogle Christopher L Dupont Brian M Hopkinson Andrew L King Kristen N Buck Kelly L Roe Rhona K Stuart Andrew E Allen Elizabeth L Mann Zackary I Johnson Katherine A Barbeau

Proc Natl Acad Sci U S A 2018 12 10;115(52):13300-13305. Epub 2018 Dec 10.

Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA 92093;

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December 2018

Biosynthesis of the neurotoxin domoic acid in a bloom-forming diatom.

Authors:
John K Brunson Shaun M K McKinnie Jonathan R Chekan John P McCrow Zachary D Miles Erin M Bertrand Vincent A Bielinski Hanna Luhavaya Miroslav Oborník G Jason Smith David A Hutchins Andrew E Allen Bradley S Moore

Science 2018 09;361(6409):1356-1358

Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA 92093, USA.

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September 2018

Downregulation of mitochondrial alternative oxidase affects chloroplast function, redox status and stress response in a marine diatom.

Authors:
Omer Murik Leila Tirichine Judit Prihoda Yann Thomas Wagner L Araújo Andrew E Allen Alisdair R Fernie Chris Bowler

New Phytol 2019 02 22;221(3):1303-1316. Epub 2018 Nov 22.

Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Ecole normale supérieure, CNRS, INSERM, Université PSL, 75005, Paris, France.

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February 2019

Simultaneous quantum yield measurements of carbon uptake and oxygen evolution in microalgal cultures.

Authors:
Niu Du Pardis Gholami David I Kline Christopher L DuPont Andrew G Dickson Dominick Mendola Todd Martz Andrew E Allen B Greg Mitchell

PLoS One 2018 19;13(6):e0199125. Epub 2018 Jun 19.

Scripps Institution of Oceanography, University of California San Diego, La Jolla, California, United States of America.

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December 2018

Carbonate-sensitive phytotransferrin controls high-affinity iron uptake in diatoms.

Authors:
Jeffrey B McQuaid Adam B Kustka Miroslav Oborník Aleš Horák John P McCrow Bogumil J Karas Hong Zheng Theodor Kindeberg Andreas J Andersson Katherine A Barbeau Andrew E Allen

Nature 2018 03 14;555(7697):534-537. Epub 2018 Mar 14.

J. Craig Venter Institute, Microbial and Environmental Genomics, La Jolla, California 92037, USA.

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March 2018