Andrew D Skol

Andrew D Skol

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Andrew D Skol

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Genetic Variants of and Are Determinants of Survival in Renal Cell Carcinoma Patients Treated with Sorafenib.

Authors:
Daniel J Crona Andrew D Skol Veli-Matti Leppänen Dylan M Glubb Amy S Etheridge Eleanor Hilliard Carol E Peña Yuri K Peterson Nancy Klauber-DeMore Kari K Alitalo Federico Innocenti

Cancer Res 2019 01 1;79(1):231-241. Epub 2018 Nov 1.

Division of Pharmacotherapy and Experimental Therapeutics, Center for Pharmacogenomics and Individualized Therapy, The University of North Carolina Eshelman School of Pharmacy, Chapel Hill, North Carolina.

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http://dx.doi.org/10.1158/0008-5472.CAN-18-1089DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6541205PMC
January 2019

Integrative genetic analysis suggests that skin color modifies the genetic architecture of melanoma.

Authors:
Imge Hulur Andrew D Skol Eric R Gamazon Nancy J Cox Kenan Onel

PLoS One 2017 3;12(10):e0185730. Epub 2017 Oct 3.

Department of Pediatrics, Hofstra Northwell School of Medicine, Hempstead, New York, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0185730PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5626488PMC
October 2017

Evaluation of Genetic Predisposition for MYCN-Amplified Neuroblastoma.

Authors:
Eric A Hungate Mark A Applebaum Andrew D Skol Zalman Vaksman Maura Diamond Lee McDaniel Samuel L Volchenboum Barbara E Stranger John M Maris Sharon J Diskin Kenan Onel Susan L Cohn

J Natl Cancer Inst 2017 10;109(10)

Affiliations of authors: Section of Hematology/Oncology, Department of Pediatrics (EAH, MAA, ADS, SLV, SLC), Section of Genetic Medicine, Department of Medicine (BES), and Institute for Genomics and Systems Biology, Center for Data Intensive Science (BES), University of Chicago, Chicago, IL; Division of Oncology and Center for Childhood Cancer Research and Department of Biomedical and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, PA (ZV, MD, LM, JMM, SJD); Department of Pediatrics and Abramson Family Cancer Research Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA (JMM, SJD); Department of Pediatrics, Hofstra-Northwell School of Medicine and The Feinstein Institute for Medical Research, Manhasset, NY (KO).

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http://dx.doi.org/10.1093/jnci/djx093DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6279278PMC
October 2017

A p53-regulated apoptotic gene signature predicts treatment response and outcome in pediatric acute lymphoblastic leukemia.

Authors:
Russell O Bainer Matthew R Trendowski Cheng Cheng Deqing Pei Wenjian Yang Steven W Paugh Kathleen H Goss Andrew D Skol Paul Pavlidis Ching-Hon Pui T Conrad Gilliam William E Evans Kenan Onel

Cancer Manag Res 2017 13;9:397-410. Epub 2017 Sep 13.

Division of Human Genetics and Genomics.

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http://dx.doi.org/10.2147/CMAR.S139864DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5602435PMC
September 2017

Does MAOA increase susceptibility to prenatal stress in young children?

Authors:
Suena H Massey Amalia E Hatcher Caron A C Clark James L Burns Daniel S Pine Andrew D Skol Daniel K Mroczek Kimberly A Espy David Goldman Edwin Cook Lauren S Wakschlag

Neurotoxicol Teratol 2017 05 3;61:82-91. Epub 2017 Feb 3.

Department of Psychiatry and Behavioral Sciences, Northwestern University Feinberg School of Medicine, 676 N Saint Clair, Suite 1000, Chicago, IL, 60611, USA; Institute for Policy Research, Northwestern University, 2040 Sheridan Road, Evanston, IL 60208, USA; Institute for Innovations in Developmental Sciences, Northwestern University, 633 N Saint Clair, 19th Floor, Chicago, IL, 60611, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ntt.2017.01.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5453809PMC
May 2017

The genetics of breast cancer risk in the post-genome era: thoughts on study design to move past BRCA and towards clinical relevance.

Authors:
Andrew D Skol Mark M Sasaki Kenan Onel

Breast Cancer Res 2016 10 3;18(1):99. Epub 2016 Oct 3.

Department of Pediatrics, The University of Chicago, Chicago, IL, 60637, USA.

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http://dx.doi.org/10.1186/s13058-016-0759-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5048663PMC
October 2016

A variant at 9p21.3 functionally implicates CDKN2B in paediatric B-cell precursor acute lymphoblastic leukaemia aetiology.

Authors:
Eric A Hungate Sapana R Vora Eric R Gamazon Takaya Moriyama Timothy Best Imge Hulur Younghee Lee Tiffany-Jane Evans Eva Ellinghaus Martin Stanulla Jéremie Rudant Laurent Orsi Jacqueline Clavel Elizabeth Milne Rodney J Scott Ching-Hon Pui Nancy J Cox Mignon L Loh Jun J Yang Andrew D Skol Kenan Onel

Nat Commun 2016 Feb 12;7:10635. Epub 2016 Feb 12.

Department of Pediatrics, University of Chicago, 900 East 57th Street, Room 5140, MC 4060, Chicago, Illinois 60637, USA.

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http://dx.doi.org/10.1038/ncomms10635DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4754340PMC
February 2016

Whole-exome Sequence Analysis Implicates Rare Il17REL Variants in Familial and Sporadic Inflammatory Bowel Disease.

Authors:
Mark M Sasaki Andrew D Skol Eric A Hungate Riyue Bao Lei Huang Stacy A Kahn James M Allan Steven R Brant Dermot P B McGovern Inga Peter Mark S Silverberg Judy H Cho Barbara S Kirschner Kenan Onel

Inflamm Bowel Dis 2016 Jan;22(1):20-7

*Department of Pediatrics and †Center for Research Informatics, The University of Chicago, Chicago, Illinois; ‡Northern Institute for Cancer Research, Newcastle University, Newcastle-upon-Tyne, United Kingdom; §Meyerhoff Inflammatory Bowel Disease Center, Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland; ‖Department of Epidemiology, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland; ¶F. Widjaja Family Foundation Inflammatory Bowel and Immunobiology Research Institute, Cedars-Sinai Medical Center, Los Angeles, California; **Department of Genetics and Genomic Sciences and ††Zane Cohen Centre for Digestive Diseases, Department of Medicine, Mount Sinai Hospital, The University of Toronto, Toronto, Ontario, Canada; and ‡‡Department of Medicine, The Icahn School of Medicine at Mount Sinai, New York, New York.

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http://dx.doi.org/10.1097/MIB.0000000000000610DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4679526PMC
January 2016

Integrated genomic analysis suggests MLL3 is a novel candidate susceptibility gene for familial nasopharyngeal carcinoma.

Authors:
Mark M Sasaki Andrew D Skol Riyue Bao Lindsay V Rhodes Rachelle Chambers Everett E Vokes Ezra E W Cohen Kenan Onel

Cancer Epidemiol Biomarkers Prev 2015 Aug 26;24(8):1222-8. Epub 2015 May 26.

Department of Pediatrics, The University of Chicago, Chicago, Illinois. The University of Chicago Comprehensive Cancer Center, The University of Chicago, Chicago, Illinois.

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http://dx.doi.org/10.1158/1055-9965.EPI-15-0275DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4526396PMC
August 2015

Establishing a translational genomics infrastructure in pediatric cancer: the GREAT KIDS experience.

Authors:
Navin Pinto Samuel L Volchenboum Andrew D Skol Lindsay Rhodes Andrew Doan Carolyn Fein-Levy Jeffrey M Lipton John M Cunningham Kenan Onel

Per Med 2015 Jun;12(3):221-229

Department of Pediatrics, The University of Chicago, 5801 S Ellis Ave, Chicago, IL 60637, USA.

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http://dx.doi.org/10.2217/pme.14.90DOI Listing
June 2015

Enrichment of inflammatory bowel disease and colorectal cancer risk variants in colon expression quantitative trait loci.

Authors:
Imge Hulur Eric R Gamazon Andrew D Skol Rosa M Xicola Xavier Llor Kenan Onel Nathan A Ellis Sonia S Kupfer

BMC Genomics 2015 Feb 27;16:138. Epub 2015 Feb 27.

Department of Medicine, 900 East 57th Street, MB#9, Chicago, IL, 60637, USA.

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http://dx.doi.org/10.1186/s12864-015-1292-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4351699PMC
February 2015

Radiation-induced apoptosis varies among individuals and is modified by sex and age.

Authors:
Mark A Applebaum Andrew D Skol Elisabeth E Bond Michael Overholtzer Gareth L Bond Kenan Onel

Int J Radiat Biol 2014 Oct 25;90(10):903-8. Epub 2014 Jun 25.

Department of Pediatrics, The University of Chicago , Chicago, Illinois , USA.

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http://dx.doi.org/10.3109/09553002.2014.925603DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4222525PMC
October 2014

Shared and independent colorectal cancer risk alleles in TGFβ-related genes in African and European Americans.

Authors:
Sonia S Kupfer Andrew D Skol Ellie Hong Anton Ludvik Rick A Kittles Temitope O Keku Robert S Sandler Nathan A Ellis

Carcinogenesis 2014 Sep 21;35(9):2025-30. Epub 2014 Apr 21.

Department of Cellular and Molecular Medicine, University of Arizona, 1515 N. Campbell Avenue, Tucson, AZ 85724, USA.

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http://carcin.oxfordjournals.org/content/early/2014/05/14/ca
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http://www.carcin.oxfordjournals.org/lookup/doi/10.1093/carc
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http://dx.doi.org/10.1093/carcin/bgu088DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4146413PMC
September 2014

Discovery and functional assessment of gene variants in the vascular endothelial growth factor pathway.

Authors:
Laia Paré-Brunet Dylan Glubb Patrick Evans Antoni Berenguer-Llergo Amy S Etheridge Andrew D Skol Anna Di Rienzo Shiwei Duan Eric R Gamazon Federico Innocenti

Hum Mutat 2014 Feb 27;35(2):227-35. Epub 2013 Nov 27.

Department of Genetics, Hospital de la Santa Creu i Sant Pau, Barcelona, Spain.

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http://dx.doi.org/10.1002/humu.22475DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3935516PMC
February 2014

Improved minimum cost and maximum power two stage genome-wide association study designs.

Authors:
Stephen A Stanhope Andrew D Skol

PLoS One 2012 6;7(9):e42367. Epub 2012 Sep 6.

Department of Human Genetics, The University of Chicago, Chicago, Illinois, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0042367PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3435377PMC
May 2013

Gene-expression-guided selection of candidate loci and molecular phenotype analyses enhance genetic discovery in systemic lupus erythematosus.

Authors:
Yelena Koldobskaya Kichul Ko Akaash A Kumar Sandra Agik Jasmine Arrington Silvia N Kariuki Beverly S Franek Marissa Kumabe Tammy O Utset Meenakshi Jolly Andrew D Skol Timothy B Niewold

Clin Dev Immunol 2012 25;2012:682018. Epub 2012 Jul 25.

Section of Rheumatology and Gwen Knapp Center for Lupus and Immunology Research, University of Chicago, Chicago, IL 60637, USA.

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http://dx.doi.org/10.1155/2012/682018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3439981PMC
January 2013

The limits of genome-wide methods for pharmacogenomic testing.

Authors:
Eric R Gamazon Andrew D Skol Minoli A Perera

Pharmacogenet Genomics 2012 Apr;22(4):261-72

Department of Medicine, Section of Genetic Medicine, University of Chicago, Chicago, Illinois, USA.

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http://dx.doi.org/10.1097/FPC.0b013e328350ca5fDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3655533PMC
April 2012

A genome-wide meta-analysis of nodular sclerosing Hodgkin lymphoma identifies risk loci at 6p21.32.

Authors:
Wendy Cozen Dalin Li Timothy Best David J Van Den Berg Pierre-Antoine Gourraud Victoria K Cortessis Andrew D Skol Thomas M Mack Sally L Glaser Lawrence M Weiss Bharat N Nathwani Smita Bhatia Fredrick R Schumacher Christopher K Edlund Amie E Hwang Susan L Slager Zachary S Fredericksen Louise C Strong Thomas M Habermann Brian K Link James R Cerhan Leslie L Robison David V Conti Kenan Onel

Blood 2012 Jan 15;119(2):469-75. Epub 2011 Nov 15.

Department of Preventive Medicine, University of Southern California Keck School of Medicine, Los Angeles, CA, USA.

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http://dx.doi.org/10.1182/blood-2011-03-343921DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3257012PMC
January 2012

Fine-mapping alleles for body weight in LG/J × SM/J F₂ and F(34) advanced intercross lines.

Authors:
Clarissa C Parker Riyan Cheng Greta Sokoloff Jackie E Lim Andrew D Skol Mark Abney Abraham A Palmer

Mamm Genome 2011 Oct 15;22(9-10):563-71. Epub 2011 Jul 15.

Department of Human Genetics, University of Chicago, 920 E 58th St., CLSC-507D, Chicago, IL 60637, USA.

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http://home.uchicago.edu/~abney/abney_web/Publications_files
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http://link.springer.com/10.1007/s00335-011-9349-z
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http://dx.doi.org/10.1007/s00335-011-9349-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3308133PMC
October 2011

Variants at 6q21 implicate PRDM1 in the etiology of therapy-induced second malignancies after Hodgkin's lymphoma.

Authors:
Timothy Best Dalin Li Andrew D Skol Tomas Kirchhoff Sarah A Jackson Yutaka Yasui Smita Bhatia Louise C Strong Susan M Domchek Katherine L Nathanson Olufunmilayo I Olopade R Stephanie Huang Thomas M Mack David V Conti Kenneth Offit Wendy Cozen Leslie L Robison Kenan Onel

Nat Med 2011 Jul 24;17(8):941-3. Epub 2011 Jul 24.

Committee on Cancer Biology, University of Chicago, Chicago, Illinois, USA.

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http://dx.doi.org/10.1038/nm.2407DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3229923PMC
July 2011

QTLRel: an R package for genome-wide association studies in which relatedness is a concern.

Authors:
Riyan Cheng Mark Abney Abraham A Palmer Andrew D Skol

BMC Genet 2011 Jul 27;12:66. Epub 2011 Jul 27.

Department of Human Genetics, The University of Chicago, IL 60637, USA.

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http://dx.doi.org/10.1186/1471-2156-12-66DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3160955PMC
July 2011

Trait-stratified genome-wide association study identifies novel and diverse genetic associations with serologic and cytokine phenotypes in systemic lupus erythematosus.

Authors:
Silvia N Kariuki Beverly S Franek Akaash A Kumar Jasmine Arrington Rachel A Mikolaitis Tammy O Utset Meenakshi Jolly Mary K Crow Andrew D Skol Timothy B Niewold

Arthritis Res Ther 2010 26;12(4):R151. Epub 2010 Jul 26.

University of Chicago Pritzker School of Medicine, Chicago, IL 60637, USA.

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http://dx.doi.org/10.1186/ar3101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2945049PMC
January 2011

Promoter variant of PIK3C3 is associated with autoimmunity against Ro and Sm epitopes in African-American lupus patients.

Authors:
Silvia N Kariuki Beverly S Franek Rachel A Mikolaitis Tammy O Utset Meenakshi Jolly Andrew D Skol Timothy B Niewold

J Biomed Biotechnol 2010 4;2010:826434. Epub 2010 Jul 4.

Section of Rheumatology and Gwen Knapp Center for Lupus and Immunology Research, University of Chicago, 5841 S. Maryland Ave. MC 0930, Chicago, IL 60637, USA.

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http://www.hindawi.com/journals/bmri/2010/826434/
Publisher Site
http://dx.doi.org/10.1155/2010/826434DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2910508PMC
January 2011

Genome-wide association studies and the problem of relatedness among advanced intercross lines and other highly recombinant populations.

Authors:
Riyan Cheng Jackie E Lim Kaitlin E Samocha Greta Sokoloff Mark Abney Andrew D Skol Abraham A Palmer

Genetics 2010 Jul 3;185(3):1033-44. Epub 2010 May 3.

Department of Human Genetics, University of Chicago, Chicago, Illinois 60637, USA.

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http://www.genetics.org/cgi/doi/10.1534/genetics.110.116863
Publisher Site
http://dx.doi.org/10.1534/genetics.110.116863DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2907190PMC
July 2010

Novel single nucleotide polymorphism associations with colorectal cancer on chromosome 8q24 in African and European Americans.

Authors:
Sonia S Kupfer Jada Benn Torres Stanley Hooker Jeffrey R Anderson Andrew D Skol Nathan A Ellis Rick A Kittles

Carcinogenesis 2009 Aug 11;30(8):1353-7. Epub 2009 Jun 11.

Sections of Gastroenterology and Genetic Medicine, Department of Medicine, University of Chicago Medical Center, Chicago, IL 60637, USA.

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https://academic.oup.com/carcin/article-lookup/doi/10.1093/c
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http://dx.doi.org/10.1093/carcin/bgp123DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2718071PMC
August 2009

Genome-wide association study to identify novel loci associated with therapy-related myeloid leukemia susceptibility.

Authors:
Jeffrey A Knight Andrew D Skol Abhijit Shinde Darcie Hastings Richard A Walgren Jin Shao Thelma R Tennant Mekhala Banerjee James M Allan Michelle M Le Beau Richard A Larson Timothy A Graubert Nancy J Cox Kenan Onel

Blood 2009 May 18;113(22):5575-82. Epub 2009 Mar 18.

Committee on Cancer Biology, University of Chicago, IL 60637, USA.

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http://dx.doi.org/10.1182/blood-2008-10-183244DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2689055PMC
May 2009

Optimal designs for two-stage genome-wide association studies.

Authors:
Andrew D Skol Laura J Scott Gonçalo R Abecasis Michael Boehnke

Genet Epidemiol 2007 Nov;31(7):776-88

Department of Biostatistics and Center for Statistical Genetics, University of Michigan, Ann Arbor, MI, USA.

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http://doi.wiley.com/10.1002/gepi.20240
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http://dx.doi.org/10.1002/gepi.20240DOI Listing
November 2007

Joint analysis is more efficient than replication-based analysis for two-stage genome-wide association studies.

Authors:
Andrew D Skol Laura J Scott Gonçalo R Abecasis Michael Boehnke

Nat Genet 2006 Feb 15;38(2):209-13. Epub 2006 Jan 15.

Department of Biostatistics and Center for Statistical Genetics, University of Michigan, 1420 Washington Heights, Ann Arbor, Michigan 48109-2029, USA.

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http://www.nature.com/articles/ng1706
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http://dx.doi.org/10.1038/ng1706DOI Listing
February 2006

An algorithm to construct genetically similar subsets of families with the use of self-reported ethnicity information.

Authors:
Andrew D Skol Rui Xiao Michael Boehnke

Am J Hum Genet 2005 Sep 14;77(3):346-54. Epub 2005 Jul 14.

Department of Biostatistics, University of Michigan, Ann Arbor, MI 48109-2029, USA.

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http://dx.doi.org/10.1086/432961DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1226201PMC
September 2005

Evaluation of SLC2A10 (GLUT10) as a candidate gene for type 2 diabetes and related traits in Finns.

Authors:
Karen L Mohlke Andrew D Skol Laura J Scott Timo T Valle Richard N Bergman Jaakko Tuomilehto Michael Boehnke Francis S Collins

Mol Genet Metab 2005 Aug;85(4):323-7

Genome Technology Branch, National Human Genome Research Institute, Bethesda, MD, USA.

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http://dx.doi.org/10.1016/j.ymgme.2005.04.011DOI Listing
August 2005

Genetic variation near the hepatocyte nuclear factor-4 alpha gene predicts susceptibility to type 2 diabetes.

Authors:
Kaisa Silander Karen L Mohlke Laura J Scott Erin C Peck Pablo Hollstein Andrew D Skol Anne U Jackson Panagiotis Deloukas Sarah Hunt George Stavrides Peter S Chines Michael R Erdos Narisu Narisu Karen N Conneely Chun Li Tasha E Fingerlin Sharanjeet K Dhanjal Timo T Valle Richard N Bergman Jaakko Tuomilehto Richard M Watanabe Michael Boehnke Francis S Collins

Diabetes 2004 Apr;53(4):1141-9

Genome Technology Branch, National Human Genome Research Institute, Bethesda, Maryland, USA.

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http://dx.doi.org/10.2337/diabetes.53.4.1141DOI Listing
April 2004

Linkage of chromosome 13q32 to schizophrenia in a large veterans affairs cooperative study sample.

Authors:
Stephen V Faraone Andrew D Skol Debby W Tsuang Stephen Bingham Keith A Young Sarita Prabhudesai Susan L Haverstock Felicitas Mena Aerath Sri Kumar Menon Darren Bisset John Pepple Fred Sautter Charlene Baldwin David Weiss Joseph Collins Tim Keith Michael Boehnke Ming T Tsuang G D Schellenberg

Am J Med Genet 2002 Aug;114(6):598-604

Brockton/West Roxbury Veterans Affairs Medical Center, Brockton, Massachusetts, USA.

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http://dx.doi.org/10.1002/ajmg.10601DOI Listing
August 2002

Probability of detection of genotyping errors and mutations as inheritance inconsistencies in nuclear-family data.

Authors:
Julie A Douglas Andrew D Skol Michael Boehnke

Am J Hum Genet 2002 Feb 8;70(2):487-95. Epub 2002 Jan 8.

Department of Human Genetics and Center for Statistical Genetics, University of Michigan, Ann Arbor, MI 48109-0618, USA.

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http://dx.doi.org/10.1086/338919DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC419989PMC
February 2002