Publications by authors named "Andrew Camilli"

100Publications

Identification of Spacer and Protospacer Sequence Requirements in the Vibrio cholerae Type I-E CRISPR/Cas System.

mSphere 2020 Nov 18;5(6). Epub 2020 Nov 18.

Department of Molecular Biology and Microbiology, Graduate School of Biomedical Sciences, Tufts University, School of Medicine, Boston, Massachusetts, USA

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http://dx.doi.org/10.1128/mSphere.00813-20DOI Listing
November 2020

Colistin-resistant carrying in food, water, hand rinse, and healthy human gut in Bangladesh.

Gut Pathog 2020 27;12. Epub 2020 Jan 27.

1Infectious Diseases Division (IDD), International Centre for Diarrheal Disease Research (icddr,b), 68, Shaheed Tajuddin Ahmed Sharani, Dhaka, 1212 Bangladesh.

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http://dx.doi.org/10.1186/s13099-020-0345-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6986151PMC
January 2020

NusG prevents transcriptional invasion of H-NS-silenced genes.

PLoS Genet 2019 10 7;15(10):e1008425. Epub 2019 Oct 7.

Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Sud, Université Paris-Saclay, France.

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http://dx.doi.org/10.1371/journal.pgen.1008425DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6797219PMC
October 2019

Expanding the repertoire of conservative site-specific recombination in Clostridioides difficile.

Anaerobe 2019 Dec 16;60:102073. Epub 2019 Jul 16.

Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.anaerobe.2019.102073DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6917912PMC
December 2019

High-Throughput Analysis of Gene Function in the Bacterial Predator Bdellovibrio bacteriovorus.

mBio 2019 06 11;10(3). Epub 2019 Jun 11.

Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, Massachusetts, USA

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http://dx.doi.org/10.1128/mBio.01040-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6561027PMC
June 2019

Niche adaptation limits bacteriophage predation of in a nutrient-poor aquatic environment.

Proc Natl Acad Sci U S A 2019 01 11;116(5):1627-1632. Epub 2019 Jan 11.

Department of Molecular Biology and Microbiology, Tufts University, Boston, MA 02111

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http://www.pnas.org/lookup/doi/10.1073/pnas.1810138116
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http://dx.doi.org/10.1073/pnas.1810138116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6358685PMC
January 2019

Lon Protease Has Multifaceted Biological Functions in .

J Bacteriol 2019 01 20;201(2). Epub 2018 Dec 20.

Department of Biology, Northeastern University, Boston, Massachusetts, USA

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http://jb.asm.org/lookup/doi/10.1128/JB.00536-18
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http://dx.doi.org/10.1128/JB.00536-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6304660PMC
January 2019

Transposon Sequencing of Vibrio cholerae in the Infant Rabbit Model of Cholera.

Methods Mol Biol 2018 ;1839:103-116

Tufts University School of Medicine, Boston, MA, USA.

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http://dx.doi.org/10.1007/978-1-4939-8685-9_10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7211033PMC
April 2019

cAMP Receptor Protein Controls Vibrio cholerae Gene Expression in Response to Host Colonization.

mBio 2018 07 10;9(4). Epub 2018 Jul 10.

Institute of Microbiology and Infection, School of Biosciences, University of Birmingham, Edgbaston, Birmingham, United Kingdom

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http://dx.doi.org/10.1128/mBio.00966-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6050953PMC
July 2018

Vibrio cholerae Outer Membrane Vesicles Inhibit Bacteriophage Infection.

J Bacteriol 2018 08 10;200(15). Epub 2018 Jul 10.

Department of Molecular Biology and Microbiology, Howard Hughes Medical Institute, Tufts University School of Medicine, Boston, Massachusetts, USA

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http://jb.asm.org/lookup/doi/10.1128/JB.00792-17
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http://dx.doi.org/10.1128/JB.00792-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6040182PMC
August 2018

Genome-wide detection of conservative site-specific recombination in bacteria.

PLoS Genet 2018 04 5;14(4):e1007332. Epub 2018 Apr 5.

Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, Massachusetts, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1007332DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5903667PMC
April 2018

Mechanisms of the evolutionary arms race between Vibrio cholerae and Vibriophage clinical isolates.

Int Microbiol 2017 Sep;20(3):116-120

Department of Molecular Biology and Microbiology and Howard Hughes Medical Institute, Tufts University School of Medicine, Boston, MA 02111, USA.

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http://revistes.iec.cat/index.php/IM/article/viewFile/144181
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http://dx.doi.org/10.2436/20.1501.01.292DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7114818PMC
September 2017

Colistin resistant carrying - in urban sludge samples: Dhaka, Bangladesh.

Gut Pathog 2017 20;9:77. Epub 2017 Dec 20.

International Center for Diarrhoeal Disease Research, Bangladesh (icddr,b), Mohakhali, Dhaka, 1212 Bangladesh.

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http://dx.doi.org/10.1186/s13099-017-0227-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5738163PMC
December 2017

Existence of a novel variant in quinolone resistant from aquatic habitats of Bangladesh.

Gut Pathog 2017 23;9:58. Epub 2017 Oct 23.

International Center for Diarrhoeal Disease Research, Bangladesh (icddr,b), Mohakhali, Dhaka, 1212 Bangladesh.

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http://dx.doi.org/10.1186/s13099-017-0207-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5654019PMC
October 2017

Growth arrest and a persister state enable resistance to osmotic shock and facilitate dissemination of Vibrio cholerae.

ISME J 2017 12 25;11(12):2718-2728. Epub 2017 Jul 25.

Department of Molecular Biology and Microbiology and Howard Hughes Medical Institute, Tufts University, Boston, MA, USA.

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http://dx.doi.org/10.1038/ismej.2017.121DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5702728PMC
December 2017

A cocktail of three virulent bacteriophages prevents Vibrio cholerae infection in animal models.

Nat Commun 2017 02 1;8:14187. Epub 2017 Feb 1.

Department of Molecular Biology and Microbiology, Howard Hughes Medical Institute, Tufts University School of Medicine, 136 Harrison Avenue, Boston, Massachussetts 02111, USA.

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http://dx.doi.org/10.1038/ncomms14187DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5296635PMC
February 2017

Immunity Provided by an Outer Membrane Vesicle Cholera Vaccine Is Due to O-Antigen-Specific Antibodies Inhibiting Bacterial Motility.

Infect Immun 2017 Jan 29;85(1). Epub 2016 Dec 29.

Department of Molecular Biology and Microbiology, Tufts University School of Medicine and Howard Hughes Medical Institute, Boston, Massachusetts, USA

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http://dx.doi.org/10.1128/IAI.00626-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5203661PMC
January 2017

ManLMN is a glucose transporter and central metabolic regulator in Streptococcus pneumoniae.

Mol Microbiol 2016 11 18;102(3):467-487. Epub 2016 Aug 18.

Program in Molecular Microbiology, Sackler School of Graduate Biomedical Sciences, Howard Hughes Medical Institute, and Department of Molecular Biology and Microbiology, Tufts University School of Medicine, 136 Harrison Avenue, Boston, MA, 02111, USA.

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http://dx.doi.org/10.1111/mmi.13473DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5116393PMC
November 2016

Transposon-Sequencing Analysis Unveils Novel Genes Involved in the Generation of Persister Cells in Uropathogenic Escherichia coli.

Antimicrob Agents Chemother 2016 11 21;60(11):6907-6910. Epub 2016 Oct 21.

Center for Adaptation Genetics and Drug Resistance, Tufts University School of Medicine, Boston, Massachusetts, USA

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http://dx.doi.org/10.1128/AAC.01617-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5075105PMC
November 2016

Global Tn-seq analysis of carbohydrate utilization and vertebrate infectivity of Borrelia burgdorferi.

Mol Microbiol 2016 09 15;101(6):1003-23. Epub 2016 Jul 15.

Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA.

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http://dx.doi.org/10.1111/mmi.13437DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5028225PMC
September 2016

Mapping to Support Fine Scale Epidemiological Cholera Investigations: A Case Study of Spatial Video in Haiti.

Int J Environ Res Public Health 2016 Feb 3;13(2):187. Epub 2016 Feb 3.

Emerging Pathogens Institute, University of Florida, Gainesville, FL 32611, USA.

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http://dx.doi.org/10.3390/ijerph13020187DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4772207PMC
February 2016

A globally distributed mobile genetic element inhibits natural transformation of Vibrio cholerae.

Proc Natl Acad Sci U S A 2015 Aug 3;112(33):10485-90. Epub 2015 Aug 3.

Department of Molecular Biology & Microbiology, Tufts University School of Medicine, Boston, MA 02111; Howard Hughes Medical Institute, Tufts University School of Medicine, Boston, MA 02111;

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http://dx.doi.org/10.1073/pnas.1509097112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4547284PMC
August 2015

Vibrio cholerae phosphatases required for the utilization of nucleotides and extracellular DNA as phosphate sources.

Mol Microbiol 2016 Feb 16;99(3):453-69. Epub 2015 Aug 16.

Howard Hughes Medical Institute and Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA, 02111, USA.

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http://dx.doi.org/10.1111/mmi.13128DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4714964PMC
February 2016

Peptidoglycan Branched Stem Peptides Contribute to Streptococcus pneumoniae Virulence by Inhibiting Pneumolysin Release.

PLoS Pathog 2015 Jun 26;11(6):e1004996. Epub 2015 Jun 26.

Graduate Program in Molecular Microbiology, Sackler School of Graduate Biomedical Sciences, Howard Hughes Medical Institute, and Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, Massachusetts, United States of America.

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http://dx.doi.org/10.1371/journal.ppat.1004996DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4483231PMC
June 2015

Carbon catabolite repression by seryl phosphorylated HPr is essential to Streptococcus pneumoniae in carbohydrate-rich environments.

Mol Microbiol 2015 Jul 15;97(2):360-80. Epub 2015 May 15.

Howard Hughes Medical Institute and Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA, 02111, USA.

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http://dx.doi.org/10.1111/mmi.13033DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4836947PMC
July 2015

The VieB auxiliary protein negatively regulates the VieSA signal transduction system in Vibrio cholerae.

BMC Microbiol 2015 Mar 4;15:59. Epub 2015 Mar 4.

Howard Hughes Medical Institute and the Department of Molecular Biology and Microbiology, Tufts University, School of Medicine, Boston, USA.

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http://www.biomedcentral.com/1471-2180/15/59
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http://dx.doi.org/10.1186/s12866-015-0387-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4352251PMC
March 2015

Genetic basis of persister tolerance to aminoglycosides in Escherichia coli.

mBio 2015 Apr 7;6(2). Epub 2015 Apr 7.

Antimicrobial Discovery Center and Department of Biology, Northeastern University, Boston, Massachusetts, USA

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http://mbio.asm.org/content/6/2/e00078-15.full.pdf
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http://mbio.asm.org/lookup/doi/10.1128/mBio.00078-15
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http://dx.doi.org/10.1128/mBio.00078-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4453570PMC
April 2015

Mutations in pneumococcal cpsE generated via in vitro serial passaging reveal a potential mechanism of reduced encapsulation utilized by a conjunctival isolate.

J Bacteriol 2015 May 16;197(10):1781-91. Epub 2015 Mar 16.

Howard Hughes Medical Institute and Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, Massachusetts, USA

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http://dx.doi.org/10.1128/JB.02602-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4402401PMC
May 2015

Genome-Wide Fitness and Genetic Interactions Determined by Tn-seq, a High-Throughput Massively Parallel Sequencing Method for Microorganisms.

Curr Protoc Microbiol 2015 Feb 2;36:1E.3.1-1E.3.24. Epub 2015 Feb 2.

Department of Molecular Biology and Microbiology, School of Medicine, Tufts University, and Howard Hughes Medical Institute, Boston, Massachusetts.

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http://dx.doi.org/10.1002/9780471729259.mc01e03s36DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4696536PMC
February 2015

Evolutionary consequences of intra-patient phage predation on microbial populations.

Elife 2014 Aug 26;3:e03497. Epub 2014 Aug 26.

Department of Molecular Biology and Microbiology, Howard Hughes Medical Institute, Tufts University School of Medicine, Boston, United States

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4141277PMC
http://dx.doi.org/10.7554/eLife.03497DOI Listing
August 2014

Multiplex genome editing by natural transformation.

Proc Natl Acad Sci U S A 2014 Jun 2;111(24):8937-42. Epub 2014 Jun 2.

Department of Molecular Biology and Microbiology andHoward Hughes Medical Institute, Tufts University School of Medicine, Boston, MA 02111

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http://dx.doi.org/10.1073/pnas.1406478111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4066482PMC
June 2014

Genome-Wide Fitness and Genetic Interactions Determined by Tn-seq, a High-Throughput Massively Parallel Sequencing Method for Microorganisms.

Curr Protoc Mol Biol 2014 Apr 14;106:7.16.1-24. Epub 2014 Apr 14.

Department of Biology, Boston College, Chestnut Hill, Massachusetts.

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http://dx.doi.org/10.1002/0471142727.mb0716s106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4568079PMC
April 2014

Vibrio cholerae-induced inflammation in the neonatal mouse cholera model.

Infect Immun 2014 Jun 31;82(6):2434-47. Epub 2014 Mar 31.

Department of Molecular Biology and Microbiology, Tufts University School of Medicine and Howard Hughes Medical Institute, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1128/IAI.00054-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4019157PMC
June 2014

Identification of in vivo regulators of the Vibrio cholerae xds gene using a high-throughput genetic selection.

Mol Microbiol 2014 Apr 14;92(2):302-15. Epub 2014 Mar 14.

Howard Hughes Medical Institute and Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA, 02111, USA.

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http://dx.doi.org/10.1111/mmi.12557DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4005888PMC
April 2014

The core promoter of the capsule operon of Streptococcus pneumoniae is necessary for colonization and invasive disease.

Infect Immun 2014 Feb 25;82(2):694-705. Epub 2013 Nov 25.

Department of Molecular Biology and Microbiology, Tufts University School of Medicine and Howard Hughes Medical Institute, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1128/IAI.01289-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3911406PMC
February 2014

Gene fitness landscapes of Vibrio cholerae at important stages of its life cycle.

PLoS Pathog 2013 26;9(12):e1003800. Epub 2013 Dec 26.

Howard Hughes Medical Institute and Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, Massachusetts, United States of America.

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http://dx.doi.org/10.1371/journal.ppat.1003800DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3873450PMC
September 2014

Transposon insertion sequencing: a new tool for systems-level analysis of microorganisms.

Nat Rev Microbiol 2013 07 28;11(7):435-42. Epub 2013 May 28.

Biology Department, Boston College, 140 Commonwealth Avenue, 420 Higgins Hall, Chestnut Hill, Massachusetts 02467, USA.

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http://dx.doi.org/10.1038/nrmicro3033DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3842022PMC
July 2013

Characterization of undermethylated sites in Vibrio cholerae.

J Bacteriol 2013 May 15;195(10):2389-99. Epub 2013 Mar 15.

Howard Hughes Medical Institute and Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, Massachusetts, USA.

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http://jb.asm.org/content/195/10/2389.full.pdf
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http://jb.asm.org/content/early/2013/03/12/JB.02112-12.full.
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http://jb.asm.org/cgi/doi/10.1128/JB.02112-12
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http://dx.doi.org/10.1128/JB.02112-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3650525PMC
May 2013

A bacteriophage encodes its own CRISPR/Cas adaptive response to evade host innate immunity.

Nature 2013 Feb;494(7438):489-91

Howard Hughes Medical Institute and Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, Massachusetts 02111, USA.

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http://dx.doi.org/10.1038/nature11927DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3587790PMC
February 2013

Genotyping 1000 yeast strains by next-generation sequencing.

BMC Genomics 2013 Feb 9;14:90. Epub 2013 Feb 9.

Genome Biology Unit, European Molecular Biology Laboratory, Meyerhofstr. 1, 69117, Heidelberg, Germany.

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http://dx.doi.org/10.1186/1471-2164-14-90DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3575377PMC
February 2013

Homopolymer tail-mediated ligation PCR: a streamlined and highly efficient method for DNA cloning and library construction.

Biotechniques 2013 Jan;54(1):25-34

Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA 02111, USA.

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http://dx.doi.org/10.2144/000113981DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3605734PMC
January 2013

Toll-like receptor (TLR) 2 mediates inflammatory responses to oligomerized RrgA pneumococcal pilus type 1 protein.

J Biol Chem 2013 Jan 11;288(4):2665-75. Epub 2012 Dec 11.

Division of Infectious Diseases, Department of Medicine, Boston Children's Hospital, Boston, Massachusetts 02115, USA.

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http://dx.doi.org/10.1074/jbc.M112.398875DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3554933PMC
January 2013

Identification of essential genes of the periodontal pathogen Porphyromonas gingivalis.

BMC Genomics 2012 Oct 31;13:578. Epub 2012 Oct 31.

Department of Molecular Biology and Microbiology, Tufts University Sackler School of Biomedical Sciences, Boston, MA 02111, USA.

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http://dx.doi.org/10.1186/1471-2164-13-578DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3547785PMC
October 2012

Phase variable O antigen biosynthetic genes control expression of the major protective antigen and bacteriophage receptor in Vibrio cholerae O1.

PLoS Pathog 2012 Sep 13;8(9):e1002917. Epub 2012 Sep 13.

Howard Hughes Medical Institute and Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, Massachusetts, USA.

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http://mekalanoslab.med.harvard.edu/pdfs/54.pdf
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http://dx.plos.org/10.1371/journal.ppat.1002917
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http://dx.doi.org/10.1371/journal.ppat.1002917DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3441752PMC
September 2012

A fine scale phenotype-genotype virulence map of a bacterial pathogen.

Genome Res 2012 Dec 23;22(12):2541-51. Epub 2012 Jul 23.

Howard Hughes Medical Institute and Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, Massachusetts 02111, USA.

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http://dx.doi.org/10.1101/gr.137430.112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3514683PMC
December 2012

Control of virulence by small RNAs in Streptococcus pneumoniae.

PLoS Pathog 2012 12;8(7):e1002788. Epub 2012 Jul 12.

Department of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee, United States of America.

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https://dx.plos.org/10.1371/journal.ppat.1002788
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http://dx.doi.org/10.1371/journal.ppat.1002788DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3395615PMC
January 2013

Mlp24 (McpX) of Vibrio cholerae implicated in pathogenicity functions as a chemoreceptor for multiple amino acids.

Infect Immun 2012 Sep 2;80(9):3170-8. Epub 2012 Jul 2.

Department of Frontier Bioscience, Faculty of Bioscience and Applied Chemistry, Hosei University, Tokyo, Japan.

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http://dx.doi.org/10.1128/IAI.00039-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3418727PMC
September 2012

Export requirements of pneumolysin in Streptococcus pneumoniae.

J Bacteriol 2012 Jul 4;194(14):3651-60. Epub 2012 May 4.

Tufts University School of Medicine and Howard Hughes Medical Institute, Department of Molecular Biology and Microbiology, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1128/JB.00114-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3393478PMC
July 2012

Immunization of mice with vibrio cholerae outer-membrane vesicles protects against hyperinfectious challenge and blocks transmission.

J Infect Dis 2012 Feb 5;205(3):412-21. Epub 2011 Dec 5.

Department of Molecular Biology and Microbiology, Tufts University School of Medicine and Howard Hughes Medical Institute, Boston, Massachusetts 02111, USA.

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http://dx.doi.org/10.1093/infdis/jir756DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3256948PMC
February 2012

Extracellular nucleases and extracellular DNA play important roles in Vibrio cholerae biofilm formation.

Mol Microbiol 2011 Nov 27;82(4):1015-37. Epub 2011 Oct 27.

Institut fuer Molekulare Biowissenschaften, Karl-Franzens-Universitaet Graz, Humboldtstrasse 50, 8010 Graz, Austria.

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http://dx.doi.org/10.1111/j.1365-2958.2011.07867.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3212620PMC
November 2011

A genome-wide approach to discovery of small RNAs involved in regulation of virulence in Vibrio cholerae.

PLoS Pathog 2011 Jul 14;7(7):e1002126. Epub 2011 Jul 14.

Howard Hughes Medical Institute and the Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, Massachusetts, United States of America.

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http://dx.doi.org/10.1371/journal.ppat.1002126DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3136459PMC
July 2011

Streptococcus pneumoniae is desiccation tolerant and infectious upon rehydration.

mBio 2011 24;2(3):e00092-11. Epub 2011 May 24.

Graduate Program in Molecular Microbiology, Sackler School of Graduate Biomedical Science, Howard Hughes Medical Institute and Department of Molecular Biology and Microbiology, School of Medicine, Tufts University, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1128/mBio.00092-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3101785PMC
October 2011

Discovery of bacterial sRNAs by high-throughput sequencing.

Methods Mol Biol 2011 ;733:63-79

Howard Hughes Medical Institute and Tufts University School of Medicine, Boston, MA, USA.

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http://dx.doi.org/10.1007/978-1-61779-089-8_5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3564964PMC
July 2011

Evidence of a dominant lineage of Vibrio cholerae-specific lytic bacteriophages shed by cholera patients over a 10-year period in Dhaka, Bangladesh.

mBio 2011 8;2(1):e00334-10. Epub 2011 Feb 8.

Howard Hughes Medical Institute and Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1128/mBio.00334-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3037004PMC
August 2011

Vibrio cholerae: lessons for mucosal vaccine design.

Expert Rev Vaccines 2011 Jan;10(1):79-94

Department of Molecular Biology and Microbiology, Tufts University School of Medicine and Howard Hughes Medical Institute, Boston, MA 02111, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3036168PMC
January 2011

Mucosal immunization with Vibrio cholerae outer membrane vesicles provides maternal protection mediated by antilipopolysaccharide antibodies that inhibit bacterial motility.

Infect Immun 2010 Oct 2;78(10):4402-20. Epub 2010 Aug 2.

Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA 02111, USA.

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http://dx.doi.org/10.1128/IAI.00398-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2950341PMC
October 2010

PhoB regulates both environmental and virulence gene expression in Vibrio cholerae.

Mol Microbiol 2010 Sep 16;77(6):1595-605. Epub 2010 Aug 16.

Howard Hughes Medical Institute and Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA 02111, USA.

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http://doi.wiley.com/10.1111/j.1365-2958.2010.07310.x
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2981138PMC
September 2010

Growth in a biofilm induces a hyperinfectious phenotype in Vibrio cholerae.

Infect Immun 2010 Aug 1;78(8):3560-9. Epub 2010 Jun 1.

Department of Microbiology and Immunology, University of North Carolina at Chapel Hill School of Medicine, 804 Manning Dr., CB 7290, Chapel Hill, NC 27599, USA.

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http://dx.doi.org/10.1128/IAI.00048-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2916270PMC
August 2010

A broadening world of bacterial small RNAs.

Curr Opin Microbiol 2010 Feb 21;13(1):18-23. Epub 2009 Dec 21.

Howard Hughes Medical Institute, Tufts University School of Medicine, Boston, MA 02111, USA.

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http://dx.doi.org/10.1016/j.mib.2009.11.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2822007PMC
February 2010

Tn-seq: high-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms.

Nat Methods 2009 Oct 20;6(10):767-72. Epub 2009 Sep 20.

Howard Hughes Medical Institute, and Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1038/nmeth.1377DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2957483PMC
October 2009

A novel regulatory protein involved in motility of Vibrio cholerae.

J Bacteriol 2009 Nov 18;191(22):7027-38. Epub 2009 Sep 18.

Institut für Molekulare Biowissenschaften, Karl-Franzens-Universitaet Graz, Humboldtstrasse 50, 8010 Graz, Austria.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2772493PMC
November 2009

Cholera transmission: the host, pathogen and bacteriophage dynamic.

Nat Rev Microbiol 2009 Oct;7(10):693-702

Howard Hughes Medical Institute, Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, Massachusetts 02111, USA.

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http://dx.doi.org/10.1038/nrmicro2204DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3842031PMC
October 2009

PhoB regulates motility, biofilms, and cyclic di-GMP in Vibrio cholerae.

J Bacteriol 2009 Nov 4;191(21):6632-42. Epub 2009 Sep 4.

Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA 02111, USA.

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http://dx.doi.org/10.1128/JB.00708-09DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2795287PMC
November 2009

High prevalence of spirochetosis in cholera patients, Bangladesh.

Emerg Infect Dis 2009 Apr;15(4):571-3

Howard Hughes Medical Institute-Tufts University School of Medicine, Boston, Massachusetts, USA.

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http://dx.doi.org/10.3201/eid1504.081214DOI Listing
April 2009

Glycogen contributes to the environmental persistence and transmission of Vibrio cholerae.

Mol Microbiol 2009 Apr 17;72(1):124-38. Epub 2009 Feb 17.

Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA 02111, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2704980PMC
April 2009

Experimental discovery of sRNAs in Vibrio cholerae by direct cloning, 5S/tRNA depletion and parallel sequencing.

Nucleic Acids Res 2009 Apr 17;37(6):e46. Epub 2009 Feb 17.

HHMI, Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA 02111, USA.

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http://dx.doi.org/10.1093/nar/gkp080DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2665243PMC
April 2009

An alternative polyamine biosynthetic pathway is widespread in bacteria and essential for biofilm formation in Vibrio cholerae.

J Biol Chem 2009 Apr 5;284(15):9899-907. Epub 2009 Feb 5.

Departments of Pharmacology, Microbiology, and Biochemistry, University of Texas Southwestern Medical Center at Dallas, Dallas, Texas 75390, USA.

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http://www.jbc.org/lookup/doi/10.1074/jbc.M900110200
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2665113PMC
April 2009

Pneumolysin localizes to the cell wall of Streptococcus pneumoniae.

J Bacteriol 2009 Apr 23;191(7):2163-8. Epub 2009 Jan 23.

Howard Hughes Medical Institute and Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, Massachusetts 02111, USA.

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http://dx.doi.org/10.1128/JB.01489-08DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2655535PMC
April 2009

Characterization of Vibrio cholerae outer membrane vesicles as a candidate vaccine for cholera.

Infect Immun 2009 Jan 10;77(1):472-84. Epub 2008 Nov 10.

Howard Hughes Medical Institute and Department of Molecular Biology and Microbiology, Tufts University School of Medicine, 136 Harrison Avenue, Boston, MA 02111, USA.

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http://dx.doi.org/10.1128/IAI.01139-08DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2612262PMC
January 2009

Isolation of Streptococcus pneumoniae biofilm mutants and their characterization during nasopharyngeal colonization.

Infect Immun 2008 Nov 15;76(11):5049-61. Epub 2008 Sep 15.

Howard Hughes Medical Institute and Department of Molecular Biology and Microbiology, Tufts University, Boston, MA 02115, USA.

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http://iai.asm.org/cgi/doi/10.1128/IAI.00425-08
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2573321PMC
November 2008

Immunization with Vibrio cholerae outer membrane vesicles induces protective immunity in mice.

Infect Immun 2008 Oct 4;76(10):4554-63. Epub 2008 Aug 4.

Department of Molecular Biology and Microbiology, Howard Hughes Medical Institute, Tufts University School of Medicine, Boston, Massachusetts 02111, USA.

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http://dx.doi.org/10.1128/IAI.00532-08DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2546833PMC
October 2008

The vibrio cholerae hybrid sensor kinase VieS contributes to motility and biofilm regulation by altering the cyclic diguanylate level.

J Bacteriol 2008 Oct 1;190(19):6439-47. Epub 2008 Aug 1.

Howard Hughes Medical Institute and the Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, Massachusetts 02111, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2565995PMC
October 2008

Roles of the sortases of Streptococcus pneumoniae in assembly of the RlrA pilus.

J Bacteriol 2008 Sep 7;190(17):6002-13. Epub 2008 Jul 7.

Howard Hughes Medical Institute and Department of Molecular Biology and Microbiology, Tufts University School of Medicine, 136 Harrison Avenue, Boston, MA 02111, USA.

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September 2008

Role of cyclic Di-GMP during el tor biotype Vibrio cholerae infection: characterization of the in vivo-induced cyclic Di-GMP phosphodiesterase CdpA.

Infect Immun 2008 Apr 28;76(4):1617-27. Epub 2008 Jan 28.

Howard Hughes Medical Institute and the Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA 02111, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2292854PMC
April 2008

The structural basis of cyclic diguanylate signal transduction by PilZ domains.

EMBO J 2007 Dec 22;26(24):5153-66. Epub 2007 Nov 22.

Department of Biological Sciences, Northeast Structural Genomics Consortium, Columbia University, New York, NY 10027, USA.

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http://dx.doi.org/10.1038/sj.emboj.7601918DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2140105PMC
December 2007

Complexity of rice-water stool from patients with Vibrio cholerae plays a role in the transmission of infectious diarrhea.

Proc Natl Acad Sci U S A 2007 Nov 16;104(48):19091-6. Epub 2007 Nov 16.

Howard Hughes Medical Institute and Department of Molecular Biology and Microbiology, Tufts University School of Medicine, 136 Harrison Avenue, Boston, MA 02111, USA.

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http://www.pnas.org/cgi/doi/10.1073/pnas.0706352104
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http://dx.doi.org/10.1073/pnas.0706352104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2141913PMC
November 2007

Genes induced late in infection increase fitness of Vibrio cholerae after release into the environment.

Cell Host Microbe 2007 Oct;2(4):264-77

Howard Hughes Medical Institute and the Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA 02111, USA.

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http://dx.doi.org/10.1016/j.chom.2007.09.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2169296PMC
October 2007