Andrei V Pisliakov

Andrei V Pisliakov

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Andrei V Pisliakov

Andrei V Pisliakov

Publications by authors named "Andrei V Pisliakov"

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17Publications

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Mechanism of allosteric activation of human mRNA cap methyltransferase (RNMT) by RAM: insights from accelerated molecular dynamics simulations.

Nucleic Acids Res 2019 09;47(16):8675-8692

Computational Biology, School of Life Sciences, University of Dundee, Dundee, DD1 5EH, UK.

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http://dx.doi.org/10.1093/nar/gkz613DOI Listing
September 2019

Lysyl-tRNA synthetase as a drug target in malaria and cryptosporidiosis.

Proc Natl Acad Sci U S A 2019 04 20;116(14):7015-7020. Epub 2019 Mar 20.

Wellcome Centre for Anti-Infectives Research, Drug Discovery Unit, Division of Biological Chemistry and Drug Discovery, University of Dundee, DD1 5EH Dundee, United Kingdom;

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http://www.pnas.org/lookup/doi/10.1073/pnas.1814685116
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http://dx.doi.org/10.1073/pnas.1814685116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6452685PMC
April 2019

Intracellular Transfer of Na in an Active-State G-Protein-Coupled Receptor.

Structure 2018 01 14;26(1):171-180.e2. Epub 2017 Dec 14.

School of Life Sciences, University of Dundee, Dundee DD1 5EH, UK; School of Science and Engineering, University of Dundee, Dundee DD1 4NH, UK. Electronic address:

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http://dx.doi.org/10.1016/j.str.2017.11.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5805466PMC
January 2018

On the role of subunit M in cytochrome cbb oxidase.

Biochem Biophys Res Commun 2017 09 8;491(1):47-52. Epub 2017 Jul 8.

Computational Biology, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, United Kingdom; Physics, School of Science and Engineering, University of Dundee, Nethergate, Dundee, DD1 4HN, United Kingdom. Electronic address:

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http://dx.doi.org/10.1016/j.bbrc.2017.07.031DOI Listing
September 2017

Insights into proton translocation in cbb oxidase from MD simulations.

Biochim Biophys Acta Bioenerg 2017 May 1;1858(5):396-406. Epub 2017 Mar 1.

Computational Biology, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, United Kingdom; Physics, School of Sciences and Engineering, University of Dundee, Nethergate, Dundee, DD1 4HN, United Kingdom. Electronic address:

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http://dx.doi.org/10.1016/j.bbabio.2017.02.013DOI Listing
May 2017

Molecular basis of RNA guanine-7 methyltransferase (RNMT) activation by RAM.

Nucleic Acids Res 2016 Dec 15;44(21):10423-10436. Epub 2016 Jul 15.

Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, UK

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http://dx.doi.org/10.1093/nar/gkw637DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5137418PMC
December 2016

Molecular dynamics simulations reveal proton transfer pathways in cytochrome C-dependent nitric oxide reductase.

PLoS Comput Biol 2012 30;8(8):e1002674. Epub 2012 Aug 30.

Theoretical Molecular Science Laboratory, RIKEN Advanced Science Institute, Wako-shi, Saitama, Japan.

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http://dx.doi.org/10.1371/journal.pcbi.1002674DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3431322PMC
December 2012

Structural insights into electron transfer in caa3-type cytochrome oxidase.

Nature 2012 Jul;487(7408):514-8

Department of Chemical and Environmental Sciences, University of Limerick, Limerick, Ireland.

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http://dx.doi.org/10.1038/nature11182DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3428721PMC
July 2012

Crystal structure of quinol-dependent nitric oxide reductase from Geobacillus stearothermophilus.

Nat Struct Mol Biol 2012 Jan 22;19(2):238-45. Epub 2012 Jan 22.

Biometal Science Laboratory, RIKEN SPring-8 Center, Sayo, Hyogo, Japan.

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http://dx.doi.org/10.1038/nsmb.2213DOI Listing
January 2012

Enzyme millisecond conformational dynamics do not catalyze the chemical step.

Proc Natl Acad Sci U S A 2009 Oct 25;106(41):17359-64. Epub 2009 Sep 25.

Department of Chemistry SGM 418, University of Southern California, 3620 McClintock Avenue, Los Angeles, CA 90089, USA.

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http://dx.doi.org/10.1073/pnas.0909150106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2762662PMC
October 2009

Electrostatic basis for the unidirectionality of the primary proton transfer in cytochrome c oxidase.

Proc Natl Acad Sci U S A 2008 Jun 28;105(22):7726-31. Epub 2008 May 28.

Department of Chemistry, University of Southern California, 418 SGM Building, 3620 McClintock Avenue, Los Angeles, CA 90089-1062, USA.

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http://dx.doi.org/10.1073/pnas.0800580105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2409407PMC
June 2008

The energetics of the primary proton transfer in bacteriorhodopsin revisited: it is a sequential light-induced charge separation after all.

Biochim Biophys Acta 2008 May 14;1777(5):441-52. Epub 2008 Mar 14.

Department of Chemistry, University of Southern California, 418 SGM Building, 3620 McClintock Avenue, Los Angeles, CA 90089-1062, USA.

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http://dx.doi.org/10.1016/j.bbabio.2008.03.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2443747PMC
May 2008

Polarizable Force Fields:  History, Test Cases, and Prospects.

J Chem Theory Comput 2007 Nov;3(6):2034-45

University of Southern California, 418 SGM Building, 3620 McClintock Avenue, Los Angeles, California 90089-1062.

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http://dx.doi.org/10.1021/ct700127wDOI Listing
November 2007

The barrier for proton transport in aquaporins as a challenge for electrostatic models: the role of protein relaxation in mutational calculations.

Proteins 2006 Sep;64(4):829-44

Department of Chemistry, University of Southern California, Los Angeles, California 90089-1062, USA.

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http://dx.doi.org/10.1002/prot.21012DOI Listing
September 2006

Two-dimensional optical three-pulse photon echo spectroscopy. I. Nonperturbative approach to the calculation of spectra.

J Chem Phys 2006 Jun;124(23):234504

Department of Chemistry, University of California-Berkeley, Berkeley, CA 94720, USA.

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http://dx.doi.org/10.1063/1.2200704DOI Listing
June 2006

Two-dimensional optical three-pulse photon echo spectroscopy. II. Signatures of coherent electronic motion and exciton population transfer in dimer two-dimensional spectra.

J Chem Phys 2006 Jun;124(23):234505

Department of Chemistry, University of California-Berkeley, Berkeley, CA 94720, USA.

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http://dx.doi.org/10.1063/1.2200705DOI Listing
June 2006

Transient phenomena in time- and frequency-gated spontaneous emission.

J Phys Chem A 2005 Apr;109(16):3587-97

Department of Chemistry, Technical University of Munich D-85747 Garching, Germany.

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http://dx.doi.org/10.1021/jp044463tDOI Listing
April 2005