Andreas Untergasser

Tracy: basecalling, alignment, assembly and deconvolution of sanger chromatogram trace files.

Authors:

Tobias Rausch Markus Hsi-Yang Fritz Andreas Untergasser Vladimir Benes

BMC Genomics 2020 Mar 14;21(1):230. Epub 2020 Mar 14.

European Molecular Biology Laboratory (EMBL), Genomics Core Facility, Heidelberg, 69117, Germany.

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March 2020

Next-generation sequencing-based detection of germline L1-mediated transductions.

Authors:

Jelena Tica Eunjung Lee Andreas Untergasser Sascha Meiers David A Garfield Omer Gokcumen Eileen E M Furlong Peter J Park Adrian M Stütz Jan O Korbel

BMC Genomics 2016 05 10;17:342. Epub 2016 May 10.

European Molecular Biology Laboratory, Genome Biology Unit, 69117, Heidelberg, Germany.

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May 2016

Removal of between-run variation in a multi-plate qPCR experiment.

Authors:

Jan M Ruijter Adrián Ruiz Villalba Jan Hellemans Andreas Untergasser Maurice J B van den Hoff

Biomol Detect Quantif 2015 Sep 30;5:10-4. Epub 2015 Jul 30.

Department of Anatomy, Embryology and Physiology, Academic Medical Centre, University of Amsterdam, Amsterdam, The Netherlands.

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September 2015

An integrated map of structural variation in 2,504 human genomes.

Authors:

Peter H Sudmant Tobias Rausch Eugene J Gardner Robert E Handsaker Alexej Abyzov John Huddleston Yan Zhang Kai Ye Goo Jun Markus Hsi-Yang Fritz Miriam K Konkel Ankit Malhotra Adrian M Stütz Xinghua Shi Francesco Paolo Casale Jieming Chen Fereydoun Hormozdiari Gargi Dayama Ken Chen Maika Malig Mark J P Chaisson Klaudia Walter Sascha Meiers Seva Kashin Erik Garrison Adam Auton Hugo Y K Lam Xinmeng Jasmine Mu Can Alkan Danny Antaki Taejeong Bae Eliza Cerveira Peter Chines Zechen Chong Laura Clarke Elif Dal Li Ding Sarah Emery Xian Fan Madhusudan Gujral Fatma Kahveci Jeffrey M Kidd Yu Kong Eric-Wubbo Lameijer Shane McCarthy Paul Flicek Richard A Gibbs Gabor Marth Christopher E Mason Androniki Menelaou Donna M Muzny Bradley J Nelson Amina Noor Nicholas F Parrish Matthew Pendleton Andrew Quitadamo Benjamin Raeder Eric E Schadt Mallory Romanovitch Andreas Schlattl Robert Sebra Andrey A Shabalin Andreas Untergasser Jerilyn A Walker Min Wang Fuli Yu Chengsheng Zhang Jing Zhang Xiangqun Zheng-Bradley Wanding Zhou Thomas Zichner Jonathan Sebat Mark A Batzer Steven A McCarroll Ryan E Mills Mark B Gerstein Ali Bashir Oliver Stegle Scott E Devine Charles Lee Evan E Eichler Jan O Korbel

Nature 2015 Oct;526(7571):75-81

European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Meyerhofstr. 1, 69117 Heidelberg, Germany.

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October 2015

RDML-Ninja and RDMLdb for standardized exchange of qPCR data.

Authors:

Jan M Ruijter Steve Lefever Jasper Anckaert Jan Hellemans Michael W Pfaffl Vladimir Benes Stephen A Bustin Jo Vandesompele Andreas Untergasser

BMC Bioinformatics 2015 Jun 20;16:197. Epub 2015 Jun 20.

Genomics Core Facility, European Molecular Biology Laboratory, Heidelberg, 69117, Germany.

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June 2015

One-step Agrobacterium mediated transformation of eight genes essential for rhizobium symbiotic signaling using the novel binary vector system pHUGE.

Authors:

Andreas Untergasser Gerben J M Bijl Wei Liu Ton Bisseling Jan G Schaart René Geurts

PLoS One 2012 24;7(10):e47885. Epub 2012 Oct 24.

Laboratory of Molecular Biology, Department of Plant Science, Wageningen University, Wageningen, The Netherlands.

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April 2013

Primer3--new capabilities and interfaces.

Authors:

Andreas Untergasser Ioana Cutcutache Triinu Koressaar Jian Ye Brant C Faircloth Maido Remm Steven G Rozen

Nucleic Acids Res 2012 Aug 22;40(15):e115. Epub 2012 Jun 22.

Zentrum für Molekulare Biologie der Universität Heidelberg, DKFZ-ZMBH Alliance, Heidelberg 69120, Germany.

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August 2012

Meeting Report from the Second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop.

Stand Genomic Sci 2010 Dec 25;3(3):259-66. Epub 2010 Dec 25.

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December 2010

LysM-type mycorrhizal receptor recruited for rhizobium symbiosis in nonlegume Parasponia.

Authors:

Rik Op den Camp Arend Streng Stéphane De Mita Qingqin Cao Elisa Polone Wei Liu Jetty S S Ammiraju Dave Kudrna Rod Wing Andreas Untergasser Ton Bisseling René Geurts

Science 2011 Feb 23;331(6019):909-12. Epub 2010 Dec 23.

Department of Plant Sciences, Wageningen University, Wageningen, Netherlands.

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February 2011

RDML: structured language and reporting guidelines for real-time quantitative PCR data.

Authors:

Steve Lefever Jan Hellemans Filip Pattyn Daniel R Przybylski Chris Taylor René Geurts Andreas Untergasser Jo Vandesompele

Nucleic Acids Res 2009 Apr 17;37(7):2065-9. Epub 2009 Feb 17.

Center for Medical Genetics, Ghent University Hospital, Ghent, Belgium.

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April 2009

Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project.

Authors:

Chris F Taylor Dawn Field Susanna-Assunta Sansone Jan Aerts Rolf Apweiler Michael Ashburner Catherine A Ball Pierre-Alain Binz Molly Bogue Tim Booth Alvis Brazma Ryan R Brinkman Adam Michael Clark Eric W Deutsch Oliver Fiehn Jennifer Fostel Peter Ghazal Frank Gibson Tanya Gray Graeme Grimes John M Hancock Nigel W Hardy Henning Hermjakob Randall K Julian Matthew Kane Carsten Kettner Christopher Kinsinger Eugene Kolker Martin Kuiper Nicolas Le Novère Jim Leebens-Mack Suzanna E Lewis Phillip Lord Ann-Marie Mallon Nishanth Marthandan Hiroshi Masuya Ruth McNally Alexander Mehrle Norman Morrison Sandra Orchard John Quackenbush James M Reecy Donald G Robertson Philippe Rocca-Serra Henry Rodriguez Heiko Rosenfelder Javier Santoyo-Lopez Richard H Scheuermann Daniel Schober Barry Smith Jason Snape Christian J Stoeckert Keith Tipton Peter Sterk Andreas Untergasser Jo Vandesompele Stefan Wiemann

Nat Biotechnol 2008 Aug;26(8):889-96

European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK.

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August 2008

Primer3Plus, an enhanced web interface to Primer3.

Authors:

Andreas Untergasser Harm Nijveen Xiangyu Rao Ton Bisseling René Geurts Jack A M Leunissen

Nucleic Acids Res 2007 Jul 7;35(Web Server issue):W71-4. Epub 2007 May 7.

Laboratory of Molecular Biology, Department of Plant Science, Wageningen University, Dreijenlaan 3, 6703HA, Wageningen, The Netherlands.

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July 2007

Preclinical differentiation between apparently safe and potentially hepatotoxic applications of TRAIL either alone or in combination with chemotherapeutic drugs.

Authors:

Tom M Ganten Ronald Koschny Jaromir Sykora Henning Schulze-Bergkamen Peter Büchler Tobias L Haas Manuela B Schader Andreas Untergasser Wolfgang Stremmel Henning Walczak

Clin Cancer Res 2006 Apr;12(8):2640-6

Divison of Apoptosis Regulation, D040, German Cancer Research Center (DKFZ), Heidelberg, Germany.

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April 2006

Dendritic cells take up viral antigens but do not support the early steps of hepatitis B virus infection.

Authors:

Andreas Untergasser Uta Zedler Anja Langenkamp Marianna Hösel Maria Quasdorff Knud Esser Hans-Peter Dienes Barbara Tappertzhofen Waldemar Kolanus Ulrike Protzer

Hepatology 2006 Mar;43(3):539-47

Molecular Infectiology at the Center for Molecular Medicine, University of Cologne, Germany.

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March 2006

Liver-directed gamma interferon gene delivery in chronic hepatitis C.

Authors:

Eui-Cheol Shin Ulrike Protzer Andreas Untergasser Stephen M Feinstone Charles M Rice Dana Hasselschwert Barbara Rehermann

J Virol 2005 Nov;79(21):13412-20

Liver Diseases Branch, NIDDK, National Institutes of Health, DHHS, 10 Center Drive, Room 9B16, Bethesda, MD 20892, USA.

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November 2005

Hepatitis B virus-based vectors allow the elimination of viral gene expression and the insertion of foreign promoters.

Authors:

Andreas Untergasser Ulrike Protzer

Hum Gene Ther 2004 Feb;15(2):203-10

Department of Virology, University of Heidelberg, D-69120 Heidelberg, Germany.

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February 2004

Primary human hepatocytes--a valuable tool for investigation of apoptosis and hepatitis B virus infection.

Authors:

Henning Schulze-Bergkamen Andreas Untergasser Andreas Dax Heiko Vogel Peter Büchler Ernst Klar Thomas Lehnert Helmut Friess Markus W Büchler Michael Kirschfink Wolfgang Stremmel Peter H Krammer Martina Müller Ulrike Protzer

J Hepatol 2003 Jun;38(6):736-44

Department of Internal Medicine IV, University of Heidelberg, Heidelberg, Germany.

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June 2003

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