Andreas Ruepp

Andreas Ruepp

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Andreas Ruepp

Andreas Ruepp

Publications by authors named "Andreas Ruepp"

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CORUM: the comprehensive resource of mammalian protein complexes-2019.

Nucleic Acids Res 2019 Jan;47(D1):D559-D563

Institute for Bioinformatics and Systems Biology (IBIS), Helmholtz Zentrum München-German Research Center for Environmental Health (GmbH), Ingolstädter Landstraße 1, D-85764 Neuherberg, Germany.

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http://dx.doi.org/10.1093/nar/gky973DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323970PMC
January 2019

PhenoDis: a comprehensive database for phenotypic characterization of rare cardiac diseases.

Orphanet J Rare Dis 2018 01 25;13(1):22. Epub 2018 Jan 25.

Institute for Bioinformatics and Systems Biology (IBIS), Helmholtz Zentrum München, German Research Center for Environmental Health (GmbH), D-85764, Neuherberg, Germany.

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http://dx.doi.org/10.1186/s13023-018-0765-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5785853PMC
January 2018

Systematic Identification of Pharmacological Targets from Small-Molecule Phenotypic Screens.

Cell Chem Biol 2016 Oct 22;23(10):1302-1313. Epub 2016 Sep 22.

Institute of Bioinformatics and Systems Biology, Helmholtz Center Munich, 85764 Neuherberg, Germany; German Center for Diabetes Research, Helmholtz Center Munich, 85764 Neuherberg, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.chembiol.2016.08.011DOI Listing
October 2016

Prediction and classification of protein functions.

Drug Discov Today Technol 2006 ;3(2):145-51

Technische Universität München, Chair of Genome Oriented Bioinformatics, Center of Life and Food Science, D-85350 Freising-Weihenstephan, Germany. Electronic

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http://dx.doi.org/10.1016/j.ddtec.2006.06.011DOI Listing
July 2014

HSC-explorer: a curated database for hematopoietic stem cells.

PLoS One 2013 30;8(7):e70348. Epub 2013 Jul 30.

Institute for Bioinformatics and Systems Biology (IBIS), Helmholtz Zentrum München - German Research Center for Environmental Health (GmbH), Neuherberg, Germany.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0070348PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3728102PMC
April 2014

HoPaCI-DB: host-Pseudomonas and Coxiella interaction database.

Nucleic Acids Res 2014 Jan 16;42(Database issue):D671-6. Epub 2013 Oct 16.

CNRS/Aix-Marseille University, Laboratoire d'Ingénierie des Systèmes Macromoléculaires (UMR7255), Institut de Microbiologie de la Méditerranée (IMM), 31 Chemin Joseph Aiguier, 13402 Marseille cedex 20, France, Institute for Bioinformatics and Systems Biology (MIPS), Helmholtz Zentrum München - German Research Center for Environmental Health (GmbH), Ingolstädter Landstr. 1, D-85764 Neuherberg, Germany, Department of Genome-Oriented Bioinformatics, Center of Life and Food Science Weihenstephan, Technische Universität München, Freising, Germany and Bundeswehr Institute of Microbiology, Neuherbergstrasse 11, 80937 Munich, Germany.

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http://dx.doi.org/10.1093/nar/gkt925DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965080PMC
January 2014

Negatome 2.0: a database of non-interacting proteins derived by literature mining, manual annotation and protein structure analysis.

Nucleic Acids Res 2014 Jan 8;42(Database issue):D396-400. Epub 2013 Nov 8.

Institute for Bioinformatics and Systems Biology/MIPS, HMGU - German Research Center for Environmental Health, Ingolstaedter Landstrasse 1, 85764 Neuherberg, Germany, Clueda AG, Elsenheimerstraße 59, 80687 Munich, Germany and Department of Genome Oriented Bioinformatics, Technische Universitaet Muenchen Wissenschaftszentrum Weihenstephan, 85350 Freising, Germany.

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http://dx.doi.org/10.1093/nar/gkt1079DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965096PMC
January 2014

PhenomiR: microRNAs in human diseases and biological processes.

Methods Mol Biol 2012 ;822:249-60

Institute for Bioinformatics and Systems Biology (MIPS), Helmholtz Zentrum München, German Research Center for Environmental Health, Neuherberg, Germany.

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http://dx.doi.org/10.1007/978-1-61779-427-8_17DOI Listing
April 2012

MicroRNAs coordinately regulate protein complexes.

BMC Syst Biol 2011 Aug 25;5:136. Epub 2011 Aug 25.

MIPS, Institute for Bioinformatics and System Biology, Helmholtz Center Munich, German Research Center for Environmental Health, Ingolstädter Landstraße 1, D-85764 Neuherberg, Germany.

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http://dx.doi.org/10.1186/1752-0509-5-136DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3170341PMC
August 2011

MIPS: curated databases and comprehensive secondary data resources in 2010.

Nucleic Acids Res 2011 Jan 24;39(Database issue):D220-4. Epub 2010 Nov 24.

Institute for Bioinformatics and Systems Biology, MIPS, Helmholtz Center F Health and Environment, Ingolstädter Landstr 1, D-85764 Neuherberg, Germany.

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http://dx.doi.org/10.1093/nar/gkq1157DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013725PMC
January 2011

Tissue-specific target analysis of disease-associated microRNAs in human signaling pathways.

PLoS One 2010 Jun 30;5(6):e11154. Epub 2010 Jun 30.

Institute for Bioinformatics and Systems Biology, Helmholtz Zentrum München, Neuherberg, Germany.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0011154PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2894853PMC
June 2010

CORUM: the comprehensive resource of mammalian protein complexes--2009.

Nucleic Acids Res 2010 Jan 1;38(Database issue):D497-501. Epub 2009 Nov 1.

Institute for Bioinformatics and Systems Biology, Helmholtz Zentrum München-German Research Center for Environmental Health, Ingolstädter Landstrasse 1, D-85764 Neuherberg, Germany.

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http://dx.doi.org/10.1093/nar/gkp914DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808912PMC
January 2010

The Negatome database: a reference set of non-interacting protein pairs.

Nucleic Acids Res 2010 Jan 17;38(Database issue):D540-4. Epub 2009 Nov 17.

Institute for Bioinformatics and Systems Biology/MIPS, HMGU-German Research Center for Environmental Health Ingolstaedter Landstrasse 1, 85764 Neuherberg, Germany.

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http://dx.doi.org/10.1093/nar/gkp1026DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808923PMC
January 2010

PhenomiR: a knowledgebase for microRNA expression in diseases and biological processes.

Genome Biol 2010 Jan 20;11(1):R6. Epub 2010 Jan 20.

Institute for Bioinformatics and Systems Biology (MIPS), Helmholtz Center Munich - German Research Center for Environmental Health (GmbH), Ingolstädter Landstrasse 1, D-85764 Neuherberg, Germany.

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http://dx.doi.org/10.1186/gb-2010-11-1-r6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2847718PMC
January 2010

CRONOS: the cross-reference navigation server.

Bioinformatics 2009 Jan 13;25(1):141-3. Epub 2008 Nov 13.

Institute for Bioinformatics and Systems Biology (MIPS), Helmholtz Zentrum München - German Research Center for Environmental Health (GmbH), Ingolstädter Landstrasse 1, D-85764 Neuherberg, Germany.

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http://dx.doi.org/10.1093/bioinformatics/btn590DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2638938PMC
January 2009

An evolutionary and structural characterization of mammalian protein complex organization.

BMC Genomics 2008 Dec 23;9:629. Epub 2008 Dec 23.

Helmholtz Center Munich-German Research Center for Environmental Health (GmbH), Institute of Bioinformatics and Systems Biology, Ingolstädter Landstrasse 1, Neuherberg, Germany.

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http://dx.doi.org/10.1186/1471-2164-9-629DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2645396PMC
December 2008

OREST: the online resource for EST analysis.

Nucleic Acids Res 2008 Jul 7;36(Web Server issue):W140-4. Epub 2008 May 7.

Institute for Bioinformatics and Systems Biology (MIPS), Helmholtz Zentrum München - German Research Center for Environmental Health (GmbH), Ingolstädter Landstrasse 1, D-85764 Neuherberg, Germany.

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http://dx.doi.org/10.1093/nar/gkn253DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447738PMC
July 2008

CORUM: the comprehensive resource of mammalian protein complexes.

Nucleic Acids Res 2008 Jan 26;36(Database issue):D646-50. Epub 2007 Oct 26.

Institute for Bioinformatics (MIPS), German Research Center for Environmental Health, Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany.

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http://dx.doi.org/10.1093/nar/gkm936DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238909PMC
January 2008

Cellulose as an extracellular matrix component present in Enterobacter sakazakii biofilms.

J Food Prot 2008 Jan;71(1):13-8

Institute for Food Safety and Hygiene, Vetsuisse Faculty, University of Zurich, CH-8057 Zurich, Switzerland.

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January 2008

Molecular characterization of the alpha-glucosidase activity in Enterobacter sakazakii reveals the presence of a putative gene cluster for palatinose metabolism.

Syst Appl Microbiol 2006 Dec 24;29(8):609-25. Epub 2006 Mar 24.

Institute for Food Safety and Hygiene, Vetsuisse Faculty, University of Zurich, Winterthurerstr 272, Zurich, Switzerland.

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http://dx.doi.org/10.1016/j.syapm.2006.02.002DOI Listing
December 2006

Cloning and characterization of Enterobacter sakazakii pigment genes and in situ spectroscopic analysis of the pigment.

FEMS Microbiol Lett 2006 Dec 27;265(2):244-8. Epub 2006 Oct 27.

Institute for Food Safety and Hygiene, Vetsuisse Faculty, University of Zurich, Zurich, Switzerland.

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https://academic.oup.com/femsle/article-lookup/doi/10.1111/j
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http://dx.doi.org/10.1111/j.1574-6968.2006.00500.xDOI Listing
December 2006

Resources and tools for investigating biomolecular networks in mammals.

Curr Pharm Des 2006 ;12(29):3723-34

Institute for Bioinformatics, GSF--National Research Center for Health and Environment, Ingolstadter Landstrasse 1, 85764 Neuherberg, Germany.

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http://dx.doi.org/10.2174/138161206778559722DOI Listing
November 2006

MPact: the MIPS protein interaction resource on yeast.

Nucleic Acids Res 2006 Jan;34(Database issue):D436-41

Institute for Bioinformatics, GSF National Research Center for Environment and Health, Ingolstädter Landstrasse 1, D-85764 Neuherberg, Germany.

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http://dx.doi.org/10.1093/nar/gkj003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347366PMC
January 2006

MIPS bacterial genomes functional annotation benchmark dataset.

Bioinformatics 2005 May 15;21(10):2520-1. Epub 2005 Mar 15.

Institute for Bioinformatics (MIPS), GSF National Research Center for Environment and Health, Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany.

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http://dx.doi.org/10.1093/bioinformatics/bti380DOI Listing
May 2005

Super paramagnetic clustering of protein sequences.

BMC Bioinformatics 2005 Apr 1;6:82. Epub 2005 Apr 1.

GSF National Research Center for Environment and Health, Institute for Bioinformatics, Ingolstädter Landstrasse 1, D-85764 Neuherberg, Germany.

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http://dx.doi.org/10.1186/1471-2105-6-82DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1084344PMC
April 2005

The MIPS mammalian protein-protein interaction database.

Bioinformatics 2005 Mar 5;21(6):832-4. Epub 2004 Nov 5.

Institute for Bioinformatics/MIPS, GSF-National Research Center for Environment and Health, Ingolstädter Landstrasse 1, 85764 Neuherberg, Germany.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/bti115DOI Listing
March 2005

The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes.

Nucleic Acids Res 2004 14;32(18):5539-45. Epub 2004 Oct 14.

Institute for Bioinformatics (MIPS), GSF National Research Center for Environment and Health, Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
Publisher Site
http://dx.doi.org/10.1093/nar/gkh894DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC524302PMC
February 2005