Andrea Zuccolo

Andrea Zuccolo

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Andrea Zuccolo

Andrea Zuccolo

Publications by authors named "Andrea Zuccolo"

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Genomic skimming for identification of medium/highly abundant transposable elements in Arundo donax and Arundo plinii.

Mol Genet Genomics 2017 Feb 24;292(1):157-171. Epub 2016 Oct 24.

Institute of Life Sciences, Scuola Superiore Sant'Anna, Piazza Martiri della Libertà, 33, 56127, Pisa, Italy.

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http://dx.doi.org/10.1007/s00438-016-1263-3DOI Listing
February 2017

Identification and characterization of abundant repetitive sequences in Eragrostis tef cv. Enatite genome.

BMC Plant Biol 2016 Feb 1;16:39. Epub 2016 Feb 1.

Institute of Life Sciences, Scuola Superiore Sant'Anna, Piazza Martiri della Libertà, 33-56127, Pisa, Italy.

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http://dx.doi.org/10.1186/s12870-016-0725-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4736629PMC
February 2016

The Ty1-copia LTR retroelement family PARTC is highly conserved in conifers over 200 MY of evolution.

Gene 2015 Aug 14;568(1):89-99. Epub 2015 May 14.

Istituto di Genomica Applicata, Via J. Linussio 51, 33100 Udine, Italy; Università degli Studi di Udine, Via delle Scienze 208, 33100 Udine, Italy.

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http://dx.doi.org/10.1016/j.gene.2015.05.028DOI Listing
August 2015

Targeting environmental adaptation in the monocot model Brachypodium distachyon: a multi-faceted approach.

BMC Genomics 2014 Sep 18;15:801. Epub 2014 Sep 18.

Institute of Life Sciences, Scuola Superiore Sant'Anna, Pisa, Italy.

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http://dx.doi.org/10.1186/1471-2164-15-801DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4177692PMC
September 2014

Evolution of gene structure in the conifer Picea glauca: a comparative analysis of the impact of intron size.

BMC Plant Biol 2014 Apr 16;14:95. Epub 2014 Apr 16.

Center for Forest Research and Institute for Systems and Integrative Biology, 1030 rue de la Médecine, Université Laval, Québec, QC G1V 0A6, Canada.

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http://dx.doi.org/10.1186/1471-2229-14-95DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4108047PMC
April 2014

Re-sequencing of a virulent strain of Campylobacter jejuni NCTC11168 reveals potential virulence factors.

Res Microbiol 2013 Jan 6;164(1):6-11. Epub 2012 Oct 6.

Department of Veterinary Science and Microbiology, University of Arizona, Tucson, AZ 85721, USA.

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http://dx.doi.org/10.1016/j.resmic.2012.10.002DOI Listing
January 2013

Complete genome sequence of Campylobacter jejuni strain S3.

J Bacteriol 2011 Mar 7;193(6):1491-2. Epub 2011 Jan 7.

Department of Veterinary Science and Microbiology, University of Arizona, 1117 E. Lowell St., Tucson, AZ 85721, USA.

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http://dx.doi.org/10.1128/JB.01475-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3067632PMC
March 2011

Analysis of transposons and repeat composition of the sunflower (Helianthus annuus L.) genome.

Theor Appl Genet 2010 Feb 14;120(3):491-508. Epub 2009 Oct 14.

Genetics Section, Department of Crop Plant Biology, University of Pisa, Pisa, Italy.

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http://dx.doi.org/10.1007/s00122-009-1170-7DOI Listing
February 2010

The B73 maize genome: complexity, diversity, and dynamics.

Authors:
Patrick S Schnable Doreen Ware Robert S Fulton Joshua C Stein Fusheng Wei Shiran Pasternak Chengzhi Liang Jianwei Zhang Lucinda Fulton Tina A Graves Patrick Minx Amy Denise Reily Laura Courtney Scott S Kruchowski Chad Tomlinson Cindy Strong Kim Delehaunty Catrina Fronick Bill Courtney Susan M Rock Eddie Belter Feiyu Du Kyung Kim Rachel M Abbott Marc Cotton Andy Levy Pamela Marchetto Kerri Ochoa Stephanie M Jackson Barbara Gillam Weizu Chen Le Yan Jamey Higginbotham Marco Cardenas Jason Waligorski Elizabeth Applebaum Lindsey Phelps Jason Falcone Krishna Kanchi Thynn Thane Adam Scimone Nay Thane Jessica Henke Tom Wang Jessica Ruppert Neha Shah Kelsi Rotter Jennifer Hodges Elizabeth Ingenthron Matt Cordes Sara Kohlberg Jennifer Sgro Brandon Delgado Kelly Mead Asif Chinwalla Shawn Leonard Kevin Crouse Kristi Collura Dave Kudrna Jennifer Currie Ruifeng He Angelina Angelova Shanmugam Rajasekar Teri Mueller Rene Lomeli Gabriel Scara Ara Ko Krista Delaney Marina Wissotski Georgina Lopez David Campos Michele Braidotti Elizabeth Ashley Wolfgang Golser HyeRan Kim Seunghee Lee Jinke Lin Zeljko Dujmic Woojin Kim Jayson Talag Andrea Zuccolo Chuanzhu Fan Aswathy Sebastian Melissa Kramer Lori Spiegel Lidia Nascimento Theresa Zutavern Beth Miller Claude Ambroise Stephanie Muller Will Spooner Apurva Narechania Liya Ren Sharon Wei Sunita Kumari Ben Faga Michael J Levy Linda McMahan Peter Van Buren Matthew W Vaughn Kai Ying Cheng-Ting Yeh Scott J Emrich Yi Jia Ananth Kalyanaraman An-Ping Hsia W Brad Barbazuk Regina S Baucom Thomas P Brutnell Nicholas C Carpita Cristian Chaparro Jer-Ming Chia Jean-Marc Deragon James C Estill Yan Fu Jeffrey A Jeddeloh Yujun Han Hyeran Lee Pinghua Li Damon R Lisch Sanzhen Liu Zhijie Liu Dawn Holligan Nagel Maureen C McCann Phillip SanMiguel Alan M Myers Dan Nettleton John Nguyen Bryan W Penning Lalit Ponnala Kevin L Schneider David C Schwartz Anupma Sharma Carol Soderlund Nathan M Springer Qi Sun Hao Wang Michael Waterman Richard Westerman Thomas K Wolfgruber Lixing Yang Yeisoo Yu Lifang Zhang Shiguo Zhou Qihui Zhu Jeffrey L Bennetzen R Kelly Dawe Jiming Jiang Ning Jiang Gernot G Presting Susan R Wessler Srinivas Aluru Robert A Martienssen Sandra W Clifton W Richard McCombie Rod A Wing Richard K Wilson

Science 2009 Nov;326(5956):1112-5

Center for Plant Genomics, Iowa State University, Ames, IA 50011, USA.

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http://www.dawelab.org/wp-content/uploads/2011/03/schnable-2
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http://www.sciencemag.org/cgi/doi/10.1126/science.1178534
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http://dx.doi.org/10.1126/science.1178534DOI Listing
November 2009

Human gut microbiota in obesity and after gastric bypass.

Proc Natl Acad Sci U S A 2009 Feb 21;106(7):2365-70. Epub 2009 Jan 21.

Center for Environmental Biotechnology, Biodesign Institute, Arizona State University, Tempe, AZ 85287, USA.

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http://dx.doi.org/10.1073/pnas.0812600106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2629490PMC
February 2009

The Rice Annotation Project Database (RAP-DB): 2008 update.

Nucleic Acids Res 2008 Jan 17;36(Database issue):D1028-33. Epub 2007 Dec 17.

National Institute of Agrobiological Sciences, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1093/nar/gkm978DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238920PMC
January 2008

Transposable element distribution, abundance and role in genome size variation in the genus Oryza.

BMC Evol Biol 2007 Aug 29;7:152. Epub 2007 Aug 29.

Arizona Genomics Institute, Department of Plant Sciences, BIO5 Institute, University of Arizona, Tucson, AZ 85721, USA.

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http://dx.doi.org/10.1186/1471-2148-7-152DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2041954PMC
August 2007

RetrOryza: a database of the rice LTR-retrotransposons.

Nucleic Acids Res 2007 Jan 28;35(Database issue):D66-70. Epub 2006 Oct 28.

Laboratoire Génome et Développement des Plantes, UMR 5096 CNRS-IRD-Université de Perpignan, 52 Avenue Paul Alduy, 66860 Perpignan, France.

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http://dx.doi.org/10.1093/nar/gkl780DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1635335PMC
January 2007

Structured motifs search.

J Comput Biol 2005 Oct;12(8):1065-82

Department of Crop Sciences and Agricultural Engineering, via delle Scienze 206, 33100 Udine, Italy.

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http://dx.doi.org/10.1089/cmb.2005.12.1065DOI Listing
October 2005

Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize.

Nat Genet 2005 Sep 31;37(9):997-1002. Epub 2005 Jul 31.

Dipartimento di Scienze Agrarie ed Ambientali, Universita' di Udine, Via delle Scienze 208, 33100 Udine, Italy.

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http://dx.doi.org/10.1038/ng1615DOI Listing
September 2005