Andrea Sboner

Andrea Sboner

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Andrea Sboner

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Clinical features of neuroendocrine prostate cancer.

Eur J Cancer 2019 Nov 13;121:7-18. Epub 2019 Sep 13.

Department of Medicine, Division of Medical Oncology, Weill Cornell Medicine, New York, NY, USA; Dana Farber Cancer Institute and Harvard Medical School, Boston, MA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ejca.2019.08.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6803064PMC
November 2019

The application of precision medicine in diagnosing familial Mediterranean fever.

Leuk Lymphoma 2019 Aug 30;60(8):2091-2093. Epub 2019 Jan 30.

a Department of Medicine , Weill Cornell Medicine , New York , NY , USA.

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https://www.tandfonline.com/doi/full/10.1080/10428194.2019.1
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http://dx.doi.org/10.1080/10428194.2019.1571204DOI Listing
August 2019

CHD1 Loss Alters AR Binding at Lineage-Specific Enhancers and Modulates Distinct Transcriptional Programs to Drive Prostate Tumorigenesis.

Cancer Cell 2019 Apr 28;35(4):603-617.e8. Epub 2019 Mar 28.

Department of Urology, Weill Cornell Medicine, New York, NY 10065, USA; Sandra and Edward Meyer Cancer Center, Weill Cornell Medicine, New York, NY 10065, USA; Caryl and Israel Englander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY 10065, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ccell.2019.03.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6467783PMC
April 2019

ZFX Mediates Non-canonical Oncogenic Functions of the Androgen Receptor Splice Variant 7 in Castrate-Resistant Prostate Cancer.

Mol Cell 2018 10 27;72(2):341-354.e6. Epub 2018 Sep 27.

Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA; Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2018.08.029DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6214474PMC
October 2018

BRCA2-Associated Prostate Cancer in a Patient With Spinal and Bulbar Muscular Atrophy.

JCO Precis Oncol 2018 29;2. Epub 2018 Jun 29.

Weill Cornell Medicine; Weill Cornell Medicine-New York Presbyterian Hospital, New York, NY.

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http://dx.doi.org/10.1200/PO.18.00115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6317373PMC
June 2018

Loss of an Androgen-Inactivating and Isoform-Specific HSD17B4 Splice Form Enables Emergence of Castration-Resistant Prostate Cancer.

Cell Rep 2018 01;22(3):809-819

Department of Cancer Biology, Lerner Research Institute, Cleveland Clinic, Cleveland, OH 44195, USA; Department of Urology, Glickman Urological and Kidney Institute, Cleveland Clinic, Cleveland, OH 44195, USA; Department of Hematology and Oncology, Taussig Cancer Institute, Cleveland Clinic, Cleveland, OH 44195, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2017.12.081DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5798464PMC
January 2018

Aberrant Activation of a Gastrointestinal Transcriptional Circuit in Prostate Cancer Mediates Castration Resistance.

Cancer Cell 2017 Dec 16;32(6):792-806.e7. Epub 2017 Nov 16.

Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA; Department of Medicine, Division of Hematology and Medical Oncology, Weill Cornell Medicine, New York, NY 10065, USA; Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ccell.2017.10.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5728174PMC
December 2017

Clonal evolution of chemotherapy-resistant urothelial carcinoma.

Nat Genet 2016 12 17;48(12):1490-1499. Epub 2016 Oct 17.

Caryl and Israel Englander Institute for Precision Medicine, New York Presbyterian Hospital-Weill Cornell Medicine, New York, New York, USA.

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http://dx.doi.org/10.1038/ng.3692DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5549141PMC
December 2016

N-Myc Induces an EZH2-Mediated Transcriptional Program Driving Neuroendocrine Prostate Cancer.

Cancer Cell 2016 10;30(4):563-577

Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY 10065, USA; Meyer Cancer Center, Weill Cornell Medicine, New York, NY 10065, USA; Englander Institute for Precision Medicine, New York-Presbyterian Hospital, Weill Cornell Medicine, New York, NY 10065, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ccell.2016.09.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5540451PMC
October 2016

A primer on precision medicine informatics.

Brief Bioinform 2016 Jan 5;17(1):145-53. Epub 2015 Jun 5.

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http://dx.doi.org/10.1093/bib/bbv032DOI Listing
January 2016

Integrative clinical genomics of advanced prostate cancer.

Cell 2015 May;161(5):1215-1228

Michigan Center for Translational Pathology, University of Michigan Medical School, Ann Arbor, MI 48109, USA; Department of Pathology, University of Michigan Medical School, Ann Arbor, MI 48109, USA; Comprehensive Cancer Center, University of Michigan Medical School, Ann Arbor, MI 48109, USA; Department of Urology, University of Michigan Medical School, Ann Arbor, MI 48109, USA; Howard Hughes Medical Institute, University of Michigan, Ann Arbor, MI 48109, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2015.05.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4484602PMC
May 2015

MAGI3-AKT3 fusion in breast cancer amended.

Nature 2015 Apr;520(7547):E11-2

Department of Pathology and Laboratory Medicine, Weill Cornell Medical College, New York, New York 10065, USA.

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http://dx.doi.org/10.1038/nature14265DOI Listing
April 2015

ASEQ: fast allele-specific studies from next-generation sequencing data.

BMC Med Genomics 2015 Mar 1;8. Epub 2015 Mar 1.

Centre for Integrative Biology (CIBIO), University of Trento, Trento, Italy.

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http://dx.doi.org/10.1186/s12920-015-0084-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4363342PMC
March 2015

PRC2 is recurrently inactivated through EED or SUZ12 loss in malignant peripheral nerve sheath tumors.

Nat Genet 2014 Nov 21;46(11):1227-32. Epub 2014 Sep 21.

1] Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA. [2] Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York, USA. [3] Department of Medicine, Weill Cornell Medical College, New York, New York, USA.

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http://dx.doi.org/10.1038/ng.3095DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4249650PMC
November 2014

The oestrogen receptor alpha-regulated lncRNA NEAT1 is a critical modulator of prostate cancer.

Nat Commun 2014 Nov 21;5:5383. Epub 2014 Nov 21.

1] Department of Pathology and Laboratory Medicine, Weill Medical College of Cornell University, 413 East 69th Street, Room 1402, New York, New York 10021, USA [2] Institute for Precision Medicine, Weill Medical College of Cornell University and New York Presbyterian Hospital, New York, New York 10021, USA.

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http://dx.doi.org/10.1038/ncomms6383DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4241506PMC
November 2014

Organoid cultures derived from patients with advanced prostate cancer.

Cell 2014 Sep 4;159(1):176-187. Epub 2014 Sep 4.

Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA; Department of Medicine, Weill Cornell Medical College and New York-Presbyterian Hospital, New York, NY 10065, USA; Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2014.08.016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4237931PMC
September 2014

MTSS1 is a metastasis driver in a subset of human melanomas.

Nat Commun 2014 Mar 17;5:3465. Epub 2014 Mar 17.

1] Division of Immunology, Allergy and Infectious Diseases (DIAID), Department of Dermatology, Medical University of Vienna, 1090 Vienna, Austria [2] Center for Molecular Medicine (CeMM), Austrian Academy of Sciences, 1090 Vienna, Austria.

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http://dx.doi.org/10.1038/ncomms4465DOI Listing
March 2014

SPOP mutations in prostate cancer across demographically diverse patient cohorts.

Neoplasia 2014 Jan;16(1):14-20

Department of Pathology and Laboratory Medicine, Institute of Precision Medicine, Weill Medical College of Cornell University, New York, NY ; Department of Urology, Weill Medical College of Cornell University, New York, NY ; Institute for Precision Medicine, Weill Medical College of Cornell University, New York, NY.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3924544PMC
http://dx.doi.org/10.1593/neo.131704DOI Listing
January 2014

Identifying an ERG-positive subclass with clinical progression using expression profiling.

Eur Urol 2013 Dec 26;64(6):951-2. Epub 2013 Mar 26.

Department of Pathology and Laboratory Medicine, Weill Cornell Medical College, New York, NY, USA; Institute for Computational Biomedicine, Weill Cornell Medical College, New York, NY, USA; Institute for Precision Medicine of Weill Cornell Medical College and New York Presbyterian Hospital, New York, NY, USA.

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http://dx.doi.org/10.1016/j.eururo.2013.03.036DOI Listing
December 2013

Novel MIR143-NOTCH fusions in benign and malignant glomus tumors.

Genes Chromosomes Cancer 2013 Nov 2;52(11):1075-87. Epub 2013 Sep 2.

Department of Pathology and Laboratory Medicine, Weill Medical College of Cornell University, NY.

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http://dx.doi.org/10.1002/gcc.22102DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3889711PMC
November 2013

Identification of molecular tumor markers in renal cell carcinomas with TFE3 protein expression by RNA sequencing.

Neoplasia 2013 Nov;15(11):1231-40

Institute of Surgical Pathology, University Hospital Zurich, Zurich, Switzerland ; Life Science Zurich PhD Program on Molecular and Translational Biomedicine, Zurich, Switzerland ; Competence Center for Systems Physiology and Metabolic Diseases, Zurich, Switzerland.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3859447PMC
http://dx.doi.org/10.1593/neo.131544DOI Listing
November 2013

Re: Stoehr et al. Lack of evidence for frequent MED12 p.L1224F mutation in prostate tumours from Caucasian patients. J Pathol 2013; 230: 453-456.

J Pathol 2013 Oct;231(2):271

Department of Urology, Weill Cornell Medical College, New York, NY, 10065, USA; Department of Pathology and Laboratory Medicine, Weill Cornell Medical College, New York, NY, 10065, USA.

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http://dx.doi.org/10.1002/path.4216DOI Listing
October 2013

Recurrent NCOA2 gene rearrangements in congenital/infantile spindle cell rhabdomyosarcoma.

Genes Chromosomes Cancer 2013 Jun 5;52(6):538-50. Epub 2013 Mar 5.

Department of Pathology and Laboratory Medicine, Weill Medical College of Cornell University, New York Presbyterian Hospital, New York, NY 10065, USA.

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https://rubinlab.med.cornell.edu/profiler_images/articles/NC
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http://doi.wiley.com/10.1002/gcc.22050
Publisher Site
http://dx.doi.org/10.1002/gcc.22050DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3734530PMC
June 2013

Epigenomic alterations in localized and advanced prostate cancer.

Neoplasia 2013 Apr;15(4):373-83

Department of Pathology and Laboratory Medicine, Weill Cornell Medical College, New York, NY 10065, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3612910PMC
http://dx.doi.org/10.1593/neo.122146DOI Listing
April 2013

IQSeq: integrated isoform quantification analysis based on next-generation sequencing.

PLoS One 2012 6;7(1):e29175. Epub 2012 Jan 6.

Department of Computer Science, Yale University, New Haven, Connecticut, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0029175PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3253133PMC
May 2012

Genomics and privacy: implications of the new reality of closed data for the field.

PLoS Comput Biol 2011 Dec 1;7(12):e1002278. Epub 2011 Dec 1.

Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut, USA.

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http://dx.doi.org/10.1371/journal.pcbi.1002278DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3228779PMC
December 2011

The real cost of sequencing: higher than you think!

Genome Biol 2011 Aug 25;12(8):125. Epub 2011 Aug 25.

Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1186/gb-2011-12-8-125DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245608PMC
August 2011

RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries.

Bioinformatics 2011 Jan 5;27(2):281-3. Epub 2010 Dec 5.

Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA.

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http://dx.doi.org/10.1093/bioinformatics/btq643DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3018817PMC
January 2011

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.

Authors:
Mark B Gerstein Zhi John Lu Eric L Van Nostrand Chao Cheng Bradley I Arshinoff Tao Liu Kevin Y Yip Rebecca Robilotto Andreas Rechtsteiner Kohta Ikegami Pedro Alves Aurelien Chateigner Marc Perry Mitzi Morris Raymond K Auerbach Xin Feng Jing Leng Anne Vielle Wei Niu Kahn Rhrissorrakrai Ashish Agarwal Roger P Alexander Galt Barber Cathleen M Brdlik Jennifer Brennan Jeremy Jean Brouillet Adrian Carr Ming-Sin Cheung Hiram Clawson Sergio Contrino Luke O Dannenberg Abby F Dernburg Arshad Desai Lindsay Dick Andréa C Dosé Jiang Du Thea Egelhofer Sevinc Ercan Ghia Euskirchen Brent Ewing Elise A Feingold Reto Gassmann Peter J Good Phil Green Francois Gullier Michelle Gutwein Mark S Guyer Lukas Habegger Ting Han Jorja G Henikoff Stefan R Henz Angie Hinrichs Heather Holster Tony Hyman A Leo Iniguez Judith Janette Morten Jensen Masaomi Kato W James Kent Ellen Kephart Vishal Khivansara Ekta Khurana John K Kim Paulina Kolasinska-Zwierz Eric C Lai Isabel Latorre Amber Leahey Suzanna Lewis Paul Lloyd Lucas Lochovsky Rebecca F Lowdon Yaniv Lubling Rachel Lyne Michael MacCoss Sebastian D Mackowiak Marco Mangone Sheldon McKay Desirea Mecenas Gennifer Merrihew David M Miller Andrew Muroyama John I Murray Siew-Loon Ooi Hoang Pham Taryn Phippen Elicia A Preston Nikolaus Rajewsky Gunnar Rätsch Heidi Rosenbaum Joel Rozowsky Kim Rutherford Peter Ruzanov Mihail Sarov Rajkumar Sasidharan Andrea Sboner Paul Scheid Eran Segal Hyunjin Shin Chong Shou Frank J Slack Cindie Slightam Richard Smith William C Spencer E O Stinson Scott Taing Teruaki Takasaki Dionne Vafeados Ksenia Voronina Guilin Wang Nicole L Washington Christina M Whittle Beijing Wu Koon-Kiu Yan Georg Zeller Zheng Zha Mei Zhong Xingliang Zhou Julie Ahringer Susan Strome Kristin C Gunsalus Gos Micklem X Shirley Liu Valerie Reinke Stuart K Kim LaDeana W Hillier Steven Henikoff Fabio Piano Michael Snyder Lincoln Stein Jason D Lieb Robert H Waterston

Science 2010 Dec 22;330(6012):1775-87. Epub 2010 Dec 22.

Program in Computational Biology and Bioinformatics, Yale University, Bass 432, 266 Whitney Avenue, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1126/science.1196914DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3142569PMC
December 2010

Optimizing copy number variation analysis using genome-wide short sequence oligonucleotide arrays.

Nucleic Acids Res 2010 Jun 15;38(10):3275-86. Epub 2010 Feb 15.

Department of Pathology and Laboratory Medicine, Weill Cornell Medical College, NY 10065, USA.

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http://dx.doi.org/10.1093/nar/gkq073DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2879534PMC
June 2010

Robust-linear-model normalization to reduce technical variability in functional protein microarrays.

J Proteome Res 2009 Dec;8(12):5451-64

Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06520, USA.

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http://dx.doi.org/10.1021/pr900412kDOI Listing
December 2009

The role of disorder in interaction networks: a structural analysis.

Mol Syst Biol 2008 25;4:179. Epub 2008 Mar 25.

Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA.

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http://dx.doi.org/10.1038/msb.2008.16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2290937PMC
April 2008

UbcH10 is overexpressed in malignant breast carcinomas.

Eur J Cancer 2007 Dec 22;43(18):2729-35. Epub 2007 Oct 22.

Dipartimento di Biologia e Patologia Cellulare e Molecolare c/o Istituto di Endocrinologia ed Oncologia Sperimentale del CNR, Facoltà di Medicina e Chirurgia di Napoli, Università degli Studi di Napoli Federico II, via S.Pansini 5, 80131 Naples, Italy.

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http://dx.doi.org/10.1016/j.ejca.2007.09.003DOI Listing
December 2007

Integrative microarray analysis of pathways dysregulated in metastatic prostate cancer.

Cancer Res 2007 Nov;67(21):10296-303

Department of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1158/0008-5472.CAN-07-2173DOI Listing
November 2007

Comparing classical pathways and modern networks: towards the development of an edge ontology.

Trends Biochem Sci 2007 Jul 20;32(7):320-31. Epub 2007 Jun 20.

Department of Molecular Biophysics and Biochemistry, Yale University, 266 Whitney Avenue, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1016/j.tibs.2007.06.003DOI Listing
July 2007

Modeling clinical judgment and implicit guideline compliance in the diagnosis of melanomas using machine learning.

AMIA Annu Symp Proc 2005 :664-8

ITC-irst and University of Trento, University of Trento, Italy.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1560780PMC
February 2007

TMABoost: an integrated system for comprehensive management of tissue microarray data.

IEEE Trans Inf Technol Biomed 2006 Jan;10(1):19-27

Bioinformatics Group, Automated Reasoning Systems Division, Centre for Scientific and Technological Research, Italy.

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http://dx.doi.org/10.1109/titb.2005.855540DOI Listing
January 2006

An automated procedure to properly handle digital images in large scale tissue microarray experiments.

Comput Methods Programs Biomed 2005 Sep;79(3):197-208

ITC-irst, SRA Division, Bioinformatics Group, Via Sommarive 18, 38050 Povo, Trento, Italy.

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http://dx.doi.org/10.1016/j.cmpb.2005.04.004DOI Listing
September 2005

Clinical validation of an automated system for supporting the early diagnosis of melanoma.

Skin Res Technol 2004 Aug;10(3):184-92

ITC-irst, Centre for Scientific and Technological Research, Povo, Trento, Italy.

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http://dx.doi.org/10.1111/j.1600-0846.2004.00066.xDOI Listing
August 2004

A multiple classifier system for early melanoma diagnosis.

Artif Intell Med 2003 Jan;27(1):29-44

ITC-irst, Centre for Scientific and Technological Research, Via Sommarive 18, Povo, Trento 38050, Italy.

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http://dx.doi.org/10.1016/s0933-3657(02)00087-8DOI Listing
January 2003