Andrea Califano

Nat Genet 2019 Oct;51(10):1427-1428

Department of Systems Biology, Columbia University Irvin Medical Center, New York, NY, USA.

PLoS One 2019 7;14(1):e0208646. Epub 2019 Jan 7.

Department of Systems Biology, Columbia University, New York, NY, United States of America.

Cancer Discov 2019 Aug 13;9(8):1102-1123. Epub 2019 Jun 13.

Cold Spring Harbor Laboratory, Cold Spring Harbor, New York.

Immunity 2019 Aug;51(2):411-412

Institute for Systems Biology, 401 Terry Ave N, Seattle, WA 98109, USA. Electronic address:

Bioinformatics 2019 Jun;35(12):2165-2166

Department of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.

Gut 2019 06 18;68(6):1034-1043. Epub 2019 Jan 18.

Herbert Irving Comprehensive Cancer Center, Columbia University Medical Center, New York, New York, USA.

Cancer Discov 2019 May 15;9(5):605-616. Epub 2019 Mar 15.

Department of Pediatrics, Memorial Sloan Kettering Cancer Center, New York, New York.

Sci Transl Med 2019 Apr;11(488)

Department of Experimental Radiation Oncology, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.

Cancer Res 2019 Mar;79(5):1014

Nat Commun 2018 12 5;9(1):5201. Epub 2018 Dec 5.

Department of Urology, Columbia University Irving Medical Center, 160 Fort Washington Ave, New York, NY, 10032, USA.

Dis Model Mech 2018 11 16;11(11). Epub 2018 Nov 16.

Departments of Urology, Medicine, Pathology & Cell Biology, and Systems Biology, Herbert Irving Comprehensive Cancer Center, Columbia University Medical Center, New York, NY 10032, USA

Oncogene 2018 10 7;37(40):5451-5465. Epub 2018 Jun 7.

Department of Pediatrics, Columbia University Medical Center, New York, NY, 10032, USA.

Nat Commun 2018 09 19;9(1):3815. Epub 2018 Sep 19.

Department of Molecular and Medical Genetics, Oregon Health & Science University, 3181 SW Sam Jackson Park Road L103, Portland, OR, 97239, USA.

Bioinformatics 2018 08;34(16):2865-2866

Department of Systems Biology, Columbia University, New York, NY, USA.

Nat Genet 2018 07 18;50(7):979-989. Epub 2018 Jun 18.

Department of Systems Biology, Columbia University, New York, NY, USA.

Cancer Discov 2018 05 6;8(5):582-599. Epub 2018 Mar 6.

Department of Systems Biology, Columbia University, New York, New York.

Nucleic Acids Res 2018 05;46(9):4354-4369

Department of Systems Biology, Institute for Cancer Genetics, Herbert Irving Comprehensive Cancer Center, Center for Computational Biology and Bioinformatics, Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY 10032, USA.

Cell Stem Cell 2018 04;22(4):575-588.e7

Stem Cell Program, Division of Hematology/Oncology, Manton Center for Orphan Disease Research, Boston Children's Hospital and Dana-Farber Cancer Institute, Boston, MA 02115, USA; Department of Biological Chemistry and Molecular Pharmacology, Harvard Stem Cell Institute, Harvard Medical School, Boston, MA 02115, USA; Harvard Stem Cell Institute, Cambridge, MA 02138, USA. Electronic address:

Immunity 2018 04 5;48(4):812-830.e14. Epub 2018 Apr 5.

Institute for Systems Biology, 401 Terry Ave N, Seattle, WA 98109, USA. Electronic address:

Nat Commun 2018 04 16;9(1):1471. Epub 2018 Apr 16.

Department of Systems Biology, Columbia University, New York, NY, 10032, USA.

Bioinformatics 2018 02;34(3):367-371

Department of Pathology and Cell Biology.

Cell Stem Cell 2017 Dec 30;21(6):747-760.e7. Epub 2017 Nov 30.

Division of Digestive and Liver Disease, Department of Medicine, Columbia University Medical Center, New York, NY 10032, USA; Herbert Irving Comprehensive Cancer Center, Columbia University Medical Center, New York, NY 10032, USA. Electronic address:

Mol Cancer Ther 2017 10 17;16(10):2069-2082. Epub 2017 Jul 17.

Department of Pediatrics, Columbia University Medical Center, New York, New York.

PLoS Comput Biol 2017 Oct 12;13(10):e1005599. Epub 2017 Oct 12.

Department of Systems Biology, Columbia University, New York, New York, United States of America.

BMC Syst Biol 2017 Sep 21;11(Suppl 4):83. Epub 2017 Sep 21.

Department of Systems Biology, 1130 St Nicholas Street, New York, 10032, NY, USA.

Mol Cancer Res 2017 08 16;15(8):998-1011. Epub 2017 May 16.

Department of Neurosurgery, Medical Center, University of Freiburg, Freiburg, Germany.

Cell Rep 2017 08;20(7):1623-1640

Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA; Department of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA; Brain Tumor Center, Memorial Sloan Kettering Cancer Center, New York, NY, USA; Cellular and Developmental Biology, Weill Cornell Medical College, New York, NY, USA; Immunogenomics and Precision Oncology Platform, Memorial Sloan Kettering Cancer Center, New York, NY, USA. Electronic address:

Cancer Discov 2017 07 14;7(7):736-749. Epub 2017 Apr 14.

Departments of Urology, Medicine, Systems Biology, and Pathology and Cell Biology, Institute of Cancer Genetics, Herbert Irving Comprehensive Cancer Center, Columbia University Medical Center, New York, New York.

Nat Commun 2017 07 24;8(1):105. Epub 2017 Jul 24.

Department of Systems Biology, Columbia University Medical Center, New York, NY, 10032, USA.

Mol Cell Proteomics 2017 05 22;16(5):891-910. Epub 2017 Mar 22.

From the ‡Thoracic and Gastrointestinal Oncology Branch, Center for Cancer Research, NCI, NIH, Bethesda, Maryland, 20892;

BMC Genomics 2017 05 30;18(1):418. Epub 2017 May 30.

Columbia Department of Systems Biology, Center for Computational Biology and Bioinformatics, Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY, 10032, USA.

Breast Cancer Res 2017 04 19;19(1):49. Epub 2017 Apr 19.

Department of Pathology, Icahn School of Medicine at Mount Sinai, New York, NY, 10029-6574, USA.

Nat Commun 2017 04 21;8:14662. Epub 2017 Apr 21.

Department of Medicine, Herbert Irving Comprehensive Cancer Center, Columbia University Medical Center, New York, New York 10032, USA.

Cancer Res 2017 03 8;77(5):1063-1074. Epub 2016 Dec 8.

Vanderbilt University School of Medicine, Nashville, Tennessee.

Nat Rev Cancer 2017 02 15;17(2):116-130. Epub 2016 Dec 15.

DarwinHealth, Inc., 3960 Broadway, Suite 540, New York, New York 10032, USA.

Proc Natl Acad Sci U S A 2017 02 7;114(8):2006-2011. Epub 2017 Feb 7.

Institute for Cancer Genetics, Columbia University, New York, NY 10032;

Database (Oxford) 2017 01;2017

Chemical Biology and Therapeutics Science Program, Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA.

Nat Med 2016 10 12;22(10):1180-1186. Epub 2016 Sep 12.

Institute for Cancer Genetics, College of Physicians and Surgeons, Columbia University, New York, New York, USA.

Genome Med 2016 10 31;8(1):116. Epub 2016 Oct 31.

Department of Pediatrics, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.

PLoS One 2016;11(9):e0163402. Epub 2016 Sep 15.

Nat Genet 2016 08 20;48(8):838-47. Epub 2016 Jun 20.

Department of Systems Biology, Columbia University, New York, New York, USA.

Cell 2016 Aug;166(4):1055

Bioinformatics 2016 07 23;32(14):2233-5. Epub 2016 Apr 23.

Department of Systems Biology, Columbia University, New York, NY, USA.

Bioinformatics 2016 07 28;32(13):1959-65. Epub 2016 Feb 28.

Department of Biomedical Informatics (DBMI) Department of Systems Biology Center for Computational Biology and Bioinformatics (C2B2), Columbia University, New York, NY, USA Department of Biochemistry and Molecular Biophysics Institute for Cancer Genetics Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY, USA.

Oncoimmunology 2016 22;5(11):e1213931. Epub 2016 Jul 22.

Clinical Cooperation Unit "Applied Tumor Immunity", National Center for Tumor Diseases (NCT) and German Cancer Research Center (DKFZ), Heidelberg, Germany; Department of Medical Oncology, National Center for Tumor Diseases (NCT) and University Hospital Heidelberg, Heidelberg, Germany.

Science 2016 Jun;352(6293):1576-80

Departments of Urology, Medicine, Systems Biology, and Pathology and Cell Biology, Institute of Cancer Genetics, Herbert Irving Comprehensive Cancer Center, Columbia University Medical Center, New York, NY 10032, USA.

PLoS One 2015 25;10(6):e0131038. Epub 2015 Jun 25.

Department of Systems Biology, Columbia University, New York, New York, United States of America; Department of Biomedical Informatics, Columbia University, New York, New York, United States of America.

Stem Cell Reports 2016 05 28;6(5):772-783. Epub 2016 Apr 28.

Cell Biology Program, Memorial Sloan-Kettering Cancer Center, New York, NY 10065, USA; Department of Medicine, Memorial Sloan-Kettering Cancer Center, New York, NY 10065, USA. Electronic address:

Cell Stem Cell 2016 Apr;18(4):441-55

Department of Digestive and Liver Diseases, Columbia University Medical Center, New York, NY 10032, USA; Herbert Irving Comprehensive Cancer Center, Columbia University Medical Center, New York, NY 10032, USA. Electronic address:

BMC Genomics 2015 26;16 Suppl 5:S4. Epub 2015 May 26.

PLoS One 2015 17;10(3):e0120352. Epub 2015 Mar 17.

Taub Institute for Research on Alzheimer's Disease & the Aging Brain and the Department of Pathology & Cell Biology, Columbia University, New York, NY, 10032, United States of America.

Cancer Res 2016 Feb 20;76(3):664-74. Epub 2015 Nov 20.

Department of Systems Biology, Columbia University, New York, New York.

Mod Pathol 2016 Feb 15;29(2):182-93. Epub 2016 Jan 15.

Department of Pathology and Cell Biology, Columbia University, New York, NY, USA.

Bioinformatics 2016 Jan 28;32(2):260-7. Epub 2015 Sep 28.

Department of Biomedical Informatics, Department of Systems Biology, Center for Computational Biology and Bioinformatics, Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY 10032, USA and.

Nature 2016 Jan 6;529(7585):172-7. Epub 2016 Jan 6.

Institute for Cancer Genetics, Columbia University Medical Center, New York 10032, USA.

Bioinformatics 2015 Dec 2;31(24):4032-4. Epub 2015 Sep 2.

Department of Systems Biology and.

Breast Cancer Res 2015 Dec 8;17(1):149. Epub 2015 Dec 8.

Department of Pathology, Icahn School of Medicine at Mount Sinai, New York, NY, 10029-6574, USA.

Nat Neurosci 2015 Sep 27;18(9):1325-33. Epub 2015 Jul 27.

Laboratory of Molecular and Cellular Neuroscience, The Rockefeller University, New York, New York, USA.

Cell Rep 2015 Sep 17;12(12):2060-71. Epub 2015 Sep 17.

Department of Systems Biology, Herbert Irving Comprehensive Cancer Center, Columbia University Medical Center, New York, NY 10032, USA; Department of Biochemistry and Molecular Biophysics, Herbert Irving Comprehensive Cancer Center, Columbia University Medical Center, New York, NY 10032, USA; Institute of Cancer Genetics, Herbert Irving Comprehensive Cancer Center, Columbia University Medical Center, New York, NY 10032, USA. Electronic address:

Genes Dev 2015 Aug 30;29(15):1631-48. Epub 2015 Jul 30.

Department of Pathology, Icahn School of Medicine at Mount Sinai, New York, New York 10029, USA;

Nat Med 2015 Aug;21(8):846-53

Inserm, UMR-1162, Génomique fonctionnelle des tumeurs solides, Institut Universitaire d'Hématologie (IUH), Paris, France.

Cell Rep 2015 Jul 2;12(2):335-45. Epub 2015 Jul 2.

Program in Neurobiology and Behavior, Columbia University, New York, NY 10032, USA; Center for Motor Neuron Biology and Disease, Columbia Stem Cell Initiative and Columbia Translational Neuroscience Initiative, Columbia University, New York, NY 10032, USA; Department of Pathology and Cell Biology, Columbia University, New York, NY 10032, USA; Program in Pathobiology and Molecular Medicine, Columbia University, New York, NY 10032, USA; Department of Neurology, Columbia University, New York, NY 10032, USA. Electronic address:

Cell 2015 Jul;162(2):441-451

Department of Biomedical Informatics (DBMI), Columbia University, New York, NY 10032, USA; Department of Systems Biology, Columbia University, New York, NY 10032, USA; Center for Computational Biology and Bioinformatics (C2B2), Columbia University, New York, NY 10032, USA; Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA; Institute for Cancer Genetics, Columbia University, New York, NY 10032, USA; Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY 10032, USA. Electronic address:

PLoS One 2014 14;9(10):e109569. Epub 2014 Oct 14.

Department of Systems Biology, Columbia University, New York, New York, United States of America; Center for Computational Biology and Bioinformatics, Columbia University, New York, New York, United States of America.

Bioinformatics 2015 May 18;31(9):1499-501. Epub 2014 Dec 18.

Systems Biology Lab, Institut Pasteur, 75724 Paris Cedex 15, France and Department of Systems Biology, Columbia University, New York, NY 10032, USA.

J Comput Biol 2015 Apr;22(4):251-2

Stem Cells 2015 Feb;33(2):367-77

Cell Biology Program, Memorial Sloan-Kettering Cancer Center, New York, New York, USA.

Genome Res 2015 Feb 5;25(2):257-67. Epub 2014 Nov 5.

Texas Children's Cancer Center, Baylor College of Medicine, Houston, Texas 77030, USA;

Genome Biol 2015 Feb 2;16:68. Epub 2015 Feb 2.

Molecular and Integrative Neuroscience Department, The Scripps Research Institute, La Jolla, CA, USA.

Neurotherapeutics 2015 Jan;12(1):126-31

Department of Pathology and Cell Biology, Columbia University, New York, NY, 10032, USA,

Nat Genet 2014 Dec;46(12):1252-3

Department of Systems Biology, the Department of Biochemistry and Molecular Biophysics, and the Department of Biomedical Informatics at Columbia University, New York, New York, USA.

Nat Biotechnol 2014 Dec 17;32(12):1213-22. Epub 2014 Nov 17.

1] Department of Systems Biology, Columbia University, New York, New York, USA. [2] Center for Computational Biology and Bioinformatics, Columbia University, New York, New York, USA. [3] Department of Biomedical Informatics, Columbia University, New York, New York, USA. [4] Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York, USA. [5] Institute for Cancer Genetics, Columbia University, New York, New York, USA. [6] Herbert Irving Comprehensive Cancer Center, Columbia University, New York, New York, USA.

Cell 2014 Oct;159(2):402-14

Department of Systems Biology, Columbia University, 1130 Saint Nicholas Avenue, New York, NY 10032, USA; Center for Computational Biology and Bioinformatics, Columbia University, 1130 Saint Nicholas Avenue, New York, NY 10032, USA; Department of Biomedical Informatics, Biochemistry & Molecular Biophysics, and Institute for Cancer Genetics, Columbia University, 1130 Saint Nicholas Avenue, New York, NY 10032, USA; Herbert Irving Comprehensive Cancer Center, Columbia University, 1130 Saint Nicholas Avenue, New York, NY 10032, USA. Electronic address:

Neuro Oncol 2014 Sep 16;16(9):1210-9. Epub 2014 Mar 16.

Gabriele Bartoli Brain Tumor Laboratory, Department of Neurosurgery, Irving Research Cancer Center, Columbia University Medical Center, New York, New York (A.M.S., A.S.C., B.A., R.L., J.Y., C.S., R.R., J.O, P.C., J.N.B.); Department of Systems Biology, Columbia University, New York, New York (M.B., A.C.); Center for Computational Biology and Bioinformatics, Columbia University, New York, New York (M.B., A.C.); Department of Pathology and Cell Biology, Irving Research Cancer Center, Columbia University Medical Center, New York, New York (L.L.); High Throughput Screening Center, Columbia University Medical Center Judith P. Sulzberger Genome Center, New York, New York (R.R., H.L., C.K.); Department of Biochemistry and Molecular Biophysics, Columbia University Medical Center, New York, New York (A.C.); Department of Biomedical Informatics, Columbia University, New York, New York (A.C.); Institute for Cancer Genetics, Columbia University, New York, New York (A.C.); Herbert Irving Comprehensive Cancer Center, Columbia University, New York, New York (A.C.).

Genome Biol 2014 Sep 17;15(9):462. Epub 2014 Sep 17.

Mol Neurodegener 2014 Jul 1;9:26. Epub 2014 Jul 1.

Molecular and Cellular Neuroscience Department, La Jolla, CA 92037, USA.

J Comput Biol 2014 May;21(5):371-2

1 Departments of Systems Biology, Biochemistry & Molecular Biophysics, Biomedical Informatics, Herbert Irving Comprehensive Cancer Center, Columbia University Medical Center , New York, New York.

Cancer Cell 2014 May;25(5):638-651

Department of Urology, Columbia University Medical Center, New York, NY 10032.

Genes Dev 2014 Apr 17;28(7):765-82. Epub 2014 Mar 17.

Institute for Cancer Genetics, Department of Pathology, Columbia University, New York, New York 10032, USA;

PLoS Comput Biol 2013 9;9(5):e1003047. Epub 2013 May 9.

IBM TJ Watson Research, Yorktown Heights, New York, USA.

Cancer Res 2014 Mar 3;74(5):1440-1451. Epub 2014 Jan 3.

Gabriele Bartoli Brain Tumor Laboratory, Department of Neurosurgery, Irving Research Cancer Center, Columbia University Medical Center, New York, NY.

Nature 2014 Mar;507(7493):462-70

Cell Rep 2014 Jan 16;6(2):313-24. Epub 2014 Jan 16.

Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA; Department of Neurology, Memorial Sloan-Kettering Cancer Center, New York, NY 10065, USA; Human Oncology and Pathogenesis Program, Memorial Sloan-Kettering Cancer Center, New York, NY 10065, USA; Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02115, USA.

Nat Commun 2013 ;4:1955

Molecular and Integrative Neuroscience Department, The Scripps Research Institute, La Jolla, California 92037, USA.

Cancer Cell 2013 Dec 27;24(6):766-76. Epub 2013 Nov 27.

Institute for Cancer Genetics, Columbia University, New York, NY, 10032, USA.

Nat Immunol 2013 Oct 25;14(10):1084-92. Epub 2013 Aug 25.

Institute for Cancer Genetics, Columbia University, New York, New York, USA.

Proc Natl Acad Sci U S A 2013 Sep 5;110(37):E3506-15. Epub 2013 Aug 5.

Department of Urology and Department of Pathology and Cell Biology, Herbert Irving Comprehensive Cancer Center, Department of Systems Biology, and Department of Medicine and Department of Genetics and Development, Columbia University Medical Center, New York, NY 10032.

Sci Transl Med 2013 Sep;5(202):202ra122

Department of Urology, Columbia University Medical Center, New York, NY 10029, USA.

Interface Focus 2013 Aug;3(4):20130011

Department of Systems Biology, Biochemistry and Molecular Biophysics, Biomedical Informatics, and Herbert Irving Comprehensive Cancer Center , Columbia University Medical Center , New York, NY 10032 , USA.

Methods Mol Biol 2013 ;980:371-84

Department of Biomedical Informatics, Columbia University, New York, NY, USA.

J Comput Biol 2013 May;20(5):373-4

Genes Dev 2013 Apr;27(8):916-27

Institute for Cancer Genetics, Columbia University, New York, New York 10032, USA.

Nat Cell Biol 2013 Mar 24;15(3):274-83. Epub 2013 Feb 24.

Department of Medicine, Columbia University College of Physicians and Surgeons, New York, New York 10032, USA.

Proc Natl Acad Sci U S A 2013 Jan 7;110(4):1404-9. Epub 2013 Jan 7.

Institute for Cancer Genetics and Herbert Irving Comprehensive Cancer Center, Department of Genetics and Development, Columbia University, New York, NY 10032, USA.

Nature 2012 Oct 30;490(7421):556-60. Epub 2012 Sep 30.

Howard Hughes Medical Institute, Columbia University, New York, New York 10032, USA.

Cancer Res 2012 Sep 19;72(17):4483-93. Epub 2012 Jul 19.

Department of Urology and Pathology and Cell Biology, Columbia University Medical Center, New York, NY 10031, USA.

Cancer Res 2012 Sep 25;72(18):4765-76. Epub 2012 Jul 25.

Department of Urology and Pathology and Cell Biology, Columbia University Medical Center, New York, New York 10031, USA.

Nat Genet 2012 Jul 27;44(8):841-7. Epub 2012 Jul 27.

Columbia Initiative in Systems Biology, Columbia University, New York, New York, USA.

Proc Natl Acad Sci U S A 2012 Feb 30;109(7):2672-7. Epub 2012 Jan 30.

Joint Center for Systems Biology, Columbia University, New York, NY 10032, USA.

Nat Med 2012 Feb 26;18(3):436-40. Epub 2012 Feb 26.

Institute for Cancer Genetics, Columbia University, New York, New York, USA.