Andre M Deelder

Andre M Deelder

UNVERIFIED PROFILE

Are you Andre M Deelder?   Register this Author

Register author
Andre M Deelder

Andre M Deelder

Publications by authors named "Andre M Deelder"

Are you Andre M Deelder?   Register this Author

100Publications

1723Reads

35Profile Views

Human Dendritic Cells with Th2-Polarizing Capacity: Analysis Using Label-Free Quantitative Proteomics.

Int Arch Allergy Immunol 2017 10;174(3-4):170-182. Epub 2017 Nov 10.

Department of Parasitology, Leiden University Medical Center (LUMC), Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1159/000479512DOI Listing
December 2017

CE-ESI-MS for bottom-up proteomics: Advances in separation, interfacing and applications.

Mass Spectrom Rev 2016 Mar-Apr;35(2):259-71. Epub 2014 May 23.

Center for Proteomics and Metabolomics, Leiden University Medical Center, Albinusdreef 2, 2300, RC, Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://doi.wiley.com/10.1002/mas.21432
Publisher Site
http://dx.doi.org/10.1002/mas.21432DOI Listing
October 2016

Differentiating samples and experimental protocols by direct comparison of tandem mass spectra.

Rapid Commun Mass Spectrom 2016 Mar;30(6):731-8

Center for Proteomics and Metabolomics, Leiden University Medical Center, Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/rcm.7494DOI Listing
March 2016

N-glycosylation Profiling of Colorectal Cancer Cell Lines Reveals Association of Fucosylation with Differentiation and Caudal Type Homebox 1 (CDX1)/Villin mRNA Expression.

Mol Cell Proteomics 2016 Jan 4;15(1):124-40. Epub 2015 Nov 4.

From the ‡Center for Proteomics and Metabolomics, ‖Department of Molecular Cell Biology and Immunology and **Division of BioAnalytical Chemistry, VU University Medical Center, Amsterdam, The Netherlands;

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1074/mcp.M115.051235DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4762531PMC
January 2016

Developments in FTICR-MS and Its Potential for Body Fluid Signatures.

Int J Mol Sci 2015 Nov 13;16(11):27133-44. Epub 2015 Nov 13.

Center for Proteomics and Metabolomics, Leiden University Medical Center (LUMC), PO Box 9600, 2300 RC Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3390/ijms161126012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4661870PMC
November 2015

Glycomic Analysis of Life Stages of the Human Parasite Schistosoma mansoni Reveals Developmental Expression Profiles of Functional and Antigenic Glycan Motifs.

Mol Cell Proteomics 2015 Jul 16;14(7):1750-69. Epub 2015 Apr 16.

From the ‡Department of Parasitology, Center of Infectious Diseases, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands;

View Article

Download full-text PDF

Source
http://www.mcponline.org/lookup/doi/10.1074/mcp.M115.048280
Publisher Site
http://dx.doi.org/10.1074/mcp.M115.048280DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4587318PMC
July 2015

Ethanol contamination of cerebrospinal fluid during standardized sampling and its effect on (1)H-NMR metabolomics.

Anal Bioanal Chem 2015 Jun 3;407(16):4835-9. Epub 2015 May 3.

Center for Proteomics and Metabolomics, Leiden University Medical Center, Albinusdreef 2, 2333 ZA, Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00216-015-8663-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4446525PMC
June 2015

Serum peptide signatures for pancreatic cancer based on mass spectrometry: a comparison to CA19-9 levels and routine imaging techniques.

J Cancer Res Clin Oncol 2015 Mar 21;141(3):531-41. Epub 2014 Sep 21.

Department of Surgery, Leiden University Medical Center (LUMC), Albinusdreef 2, 2333 ZA, Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00432-014-1812-2DOI Listing
March 2015

Towards imaging metabolic pathways in tissues.

Anal Bioanal Chem 2015 Mar 9;407(8):2167-76. Epub 2014 Nov 9.

Department of Medical Oncology, Leiden University Medical Center, 2333 ZA, Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00216-014-8305-7DOI Listing
March 2015

Top-down MALDI-in-source decay-FTICR mass spectrometry of isotopically resolved proteins.

Anal Chem 2015 Mar 5;87(6):3429-37. Epub 2015 Mar 5.

Center for Proteomics and Metabolomics, Leiden University Medical Center (LUMC), PO Box 9600, 2300 RC, Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/ac504708yDOI Listing
March 2015

N-glycomic profiling as a tool to separate rectal adenomas from carcinomas.

Mol Cell Proteomics 2015 Feb 1;14(2):277-88. Epub 2014 Dec 1.

From the ‡Department of Surgery, Helsinki University Central Hospital, Helsinki, Finland; §Research Programs Unit, Translational Cancer Biology, University of Helsinki, Helsinki, Finland;

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1074/mcp.M114.041632DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4350025PMC
February 2015

Insight in genome-wide association of metabolite quantitative traits by exome sequence analyses.

PLoS Genet 2015 Jan 8;11(1):e1004835. Epub 2015 Jan 8.

Department of Human Genetics, Leiden University Medical Center, Leiden, the Netherlands; Department of Endocrinology, Leiden University Medical Center, Leiden, the Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pgen.1004835DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4287344PMC
January 2015

Capillary-electrophoresis mass spectrometry for the detection of carbapenemases in (multi-)drug-resistant Gram-negative bacteria.

Anal Chem 2014 Sep 4;86(18):9154-61. Epub 2014 Sep 4.

Department of Medical Microbiology, Section Experimental Microbiology, Leiden University Medical Center , 2333 ZA Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/ac502049pDOI Listing
September 2014

Comprehensive gas chromatography-electron ionisation mass spectrometric analysis of fatty acids and sterols using sequential one-pot silylation: quantification and isotopologue analysis.

Rapid Commun Mass Spectrom 2014 Jul;28(13):1507-14

Center for Proteomics and Metabolomics, Leiden University Medical Center (LUMC), Albinusdreef 2, 2300, RC, Leiden, The Netherlands; AIMMS Division of BioAnalytical Chemistry, VU University Amsterdam, De Boelelaan 1083, 1081, HV, Amsterdam, The Netherlands.

View Article

Download full-text PDF

Source
http://doi.wiley.com/10.1002/rcm.6923
Publisher Site
http://dx.doi.org/10.1002/rcm.6923DOI Listing
July 2014

PeptidePicker: a scientific workflow with web interface for selecting appropriate peptides for targeted proteomics experiments.

J Proteomics 2014 Jun 22;106:151-61. Epub 2014 Apr 22.

University of Victoria - Genome British Columbia Proteomics Centre, University of Victoria, Victoria, BC V8Z7X8, Canada; Department of Biochemistry & Microbiology, University of Victoria, Victoria, BC V8P 5C2, Canada. Electronic address:

View Article

Download full-text PDF

Source
http://ac.els-cdn.com/S1874391914001857/1-s2.0-S187439191400
Web Search
http://linkinghub.elsevier.com/retrieve/pii/S187439191400185
Publisher Site
http://dx.doi.org/10.1016/j.jprot.2014.04.018DOI Listing
June 2014

Structural analysis of an intact monoclonal antibody by online electrochemical reduction of disulfide bonds and Fourier transform ion cyclotron resonance mass spectrometry.

Anal Chem 2014 Jun 12;86(11):5376-82. Epub 2014 May 12.

Center for Proteomics and Metabolomics, Leiden University Medical Center , Albinusdreef 2, 2300 RC Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/ac500383cDOI Listing
June 2014

High-throughput profiling of protein N-glycosylation by MALDI-TOF-MS employing linkage-specific sialic acid esterification.

Anal Chem 2014 Jun 28;86(12):5784-93. Epub 2014 May 28.

Center for Proteomics and Metabolomics, Leiden University Medical Center , 2300 RC Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/ac500335tDOI Listing
June 2014

Fibronectin is a serum biomarker for Duchenne muscular dystrophy.

Proteomics Clin Appl 2014 Apr 11;8(3-4):269-78. Epub 2014 Mar 11.

Department of Human Genetics, Leiden University Medical Center (LUMC), RC, Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/prca.201300072DOI Listing
April 2014

Binding of von Willebrand factor and plasma proteins to the eggshell of Schistosoma mansoni.

Int J Parasitol 2014 Apr 18;44(5):263-8. Epub 2014 Feb 18.

Department of Medical Microbiology and Infectious Diseases, Erasmus University Medical Center, Rotterdam, The Netherlands. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ijpara.2013.12.006DOI Listing
April 2014

Identifying proteins in zebrafish embryos using spectral libraries generated from dissected adult organs and tissues.

J Proteome Res 2014 Mar 5;13(3):1537-44. Epub 2014 Feb 5.

Center for Proteomics and Metabolomics, Leiden University Medical Center , Albinusdreef 2, Leiden 2300 RC, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/pr4010585DOI Listing
March 2014

Total plasma N-glycome changes during pregnancy.

J Proteome Res 2014 Mar 25;13(3):1657-68. Epub 2014 Feb 25.

Center for Proteomics and Metabolomics, Leiden University Medical Center , Leiden 2333 ZA, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/pr401128jDOI Listing
March 2014

IgG Fc N-glycosylation in Guillain-Barré syndrome treated with immunoglobulins.

J Proteome Res 2014 Mar 17;13(3):1722-30. Epub 2014 Feb 17.

Department of Immunology, ‡Department of Neurology, and §Department of Epidemiology, Erasmus MC, University Medical Center Rotterdam , Dr. Molewaterplein 50, 3000 CA Rotterdam, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/pr401213zDOI Listing
March 2014

Site-specific N-glycosylation analysis of human immunoglobulin e.

J Proteome Res 2014 Feb 13;13(2):536-46. Epub 2013 Dec 13.

Center for Proteomics and Metabolomics, ‡Department of Rheumatology, Leiden University Medical Center , 2300 RC Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/pr400714wDOI Listing
February 2014

An automated RP-SCX solid-phase extraction procedure for urinary peptidomics biomarker discovery studies.

Methods Mol Biol 2013 ;1023:169-80

Department of Parasitology, Leiden University Medical Center, RC Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://link.springer.com/10.1007/978-1-4614-7209-4_11
Publisher Site
http://dx.doi.org/10.1007/978-1-4614-7209-4_11DOI Listing
January 2014

1H-NMR metabolic profiling of cerebrospinal fluid in patients with complex regional pain syndrome-related dystonia.

Pain 2014 Jan 11;155(1):190-6. Epub 2013 Oct 11.

Center for Proteomics and Metabolomics, Leiden University Medical Center, PO Box 9600, 2300 RC Leiden, The Netherlands. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.pain.2013.10.005DOI Listing
January 2014

On-line electrochemical reduction of disulfide bonds: improved FTICR-CID and -ETD coverage of oxytocin and hepcidin.

J Am Soc Mass Spectrom 2013 Dec 10;24(12):1980-7. Epub 2013 Sep 10.

Leiden University Medical Center (LUMC), Center for Proteomics and Metabolomics, 2300 RC, Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s13361-013-0725-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3837188PMC
December 2013

Evaluation of interspecimen trypsin digestion efficiency prior to multiple reaction monitoring-based absolute protein quantification with native protein calibrators.

J Proteome Res 2013 Dec 13;12(12):5760-74. Epub 2013 Nov 13.

Department of Clinical Chemistry and Laboratory Medicine, Leiden University Medical Center (LUMC) , Albinusdreef 2, 2333 ZA, Leiden, the Netherlands.

View Article

Download full-text PDF

Source
http://pubs.acs.org/doi/10.1021/pr400763d
Publisher Site
http://dx.doi.org/10.1021/pr400763dDOI Listing
December 2013

Authentication of fish products by large-scale comparison of tandem mass spectra.

J Proteome Res 2013 Nov 15;12(11):5253-9. Epub 2013 Oct 15.

National Food Institute, Technical University of Denmark , Mørkhøj Bygade 19, Soborg 2860, Denmark.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/pr4006525DOI Listing
November 2013

Association between galactosylation of immunoglobulin G and improvement of rheumatoid arthritis during pregnancy is independent of sialylation.

J Proteome Res 2013 Oct 24;12(10):4522-31. Epub 2013 Sep 24.

Department of Rheumatology, Erasmus University Medical Center , 3000 CA Rotterdam, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/pr400589mDOI Listing
October 2013

Parallel deep transcriptome and proteome analysis of zebrafish larvae.

BMC Res Notes 2013 Oct 24;6:428. Epub 2013 Oct 24.

Center for Proteomics and Metabolomics, Leiden University Medical Center, Zone L04-Q, P,O, Box 9600, 2300 RC, Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1756-0500-6-428DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4016144PMC
October 2013

Nano-HPLC-MS of glycopeptides obtained after nonspecific proteolysis.

Methods Mol Biol 2013 ;951:113-27

Department of Parasitology, Leiden University Medical Center, Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/978-1-62703-146-2_9DOI Listing
June 2013

Use of expressed sequence tags as an alternative approach for the identification of Taenia solium metacestode excretion/secretion proteins.

BMC Res Notes 2013 Jun 6;6:224. Epub 2013 Jun 6.

Veterinary Helminthology Unit, Department of Biomedical Sciences, Institute of Tropical Medicine, Antwerp, Belgium.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1756-0500-6-224DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3686625PMC
June 2013

Evaluation of different column chemistries for fast urinary metabolic profiling.

J Chromatogr B Analyt Technol Biomed Life Sci 2013 May 26;927:90-6. Epub 2013 Feb 26.

Leiden University Medical Center (LUMC), Center for Proteomics and Metabolomics, Albinusdreef 2, 2300RC Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jchromb.2013.02.017DOI Listing
May 2013

Identification of new apolipoprotein-CIII glycoforms with ultrahigh resolution MALDI-FTICR mass spectrometry of human sera.

J Proteome Res 2013 May 5;12(5):2260-8. Epub 2013 Apr 5.

Center for Proteomics and Metabolomics, Leiden University Medical Center (LUMC), Albinusdreef 2, 2300 RC, Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://pubs.acs.org/doi/10.1021/pr400136p
Publisher Site
http://dx.doi.org/10.1021/pr400136pDOI Listing
May 2013

Glycoproteomic analysis of antibodies.

Mol Cell Proteomics 2013 Apr 16;12(4):856-65. Epub 2013 Jan 16.

Biomolecular Mass Spectrometry Unit, Postbus 9600, 2300RC Leiden University Medical Center, Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1074/mcp.R112.026005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3617332PMC
April 2013

Imaging mass spectrometry-based molecular histology differentiates microscopically identical and heterogeneous tumors.

J Proteome Res 2013 Apr 25;12(4):1847-55. Epub 2013 Mar 25.

Biomolecular Mass Spectrometry Unit, Department of Parasitology, Leiden University Medical Center , Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/pr301190gDOI Listing
April 2013

Mapping O-glycosylation of apolipoprotein C-III in MALDI-FT-ICR protein profiles.

Proteomics 2013 Mar 19;13(6):992-1001. Epub 2013 Feb 19.

Center for Proteomics and Metabolomics, Leiden University Medical Center (LUMC), Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://doi.wiley.com/10.1002/pmic.201200293
Publisher Site
http://dx.doi.org/10.1002/pmic.201200293DOI Listing
March 2013

Identification of genetic variants influencing the human plasma proteome.

Proc Natl Acad Sci U S A 2013 Mar 4;110(12):4673-8. Epub 2013 Mar 4.

Department of Immunology, Genetics, and Pathology, Rudbeck Laboratory, SciLifeLab, Uppsala University, 75185 Uppsala, Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.1217238110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3606982PMC
March 2013

Comparison of the Fc glycosylation of fetal and maternal immunoglobulin G.

Glycoconj J 2013 Feb 10;30(2):147-57. Epub 2012 May 10.

Department of Experimental Immunohematology, Sanquin Research, and Landsteiner Laboratory, Academic Medical Center, University of Amsterdam, Amsterdam, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s10719-012-9381-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3552368PMC
February 2013

Coupling porous sheathless interface MS with transient-ITP in neutral capillaries for improved sensitivity in glycopeptide analysis.

Electrophoresis 2013 Feb 3;34(3):383-7. Epub 2013 Jan 3.

Biomolecular Mass Spectrometry Unit, Department of Parasitology, Leiden University Medical Center, Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://doi.wiley.com/10.1002/elps.201200357
Publisher Site
http://dx.doi.org/10.1002/elps.201200357DOI Listing
February 2013

High-throughput IgG Fc N-glycosylation profiling by mass spectrometry of glycopeptides.

J Proteome Res 2013 Feb 18;12(2):821-31. Epub 2013 Jan 18.

Laboratory of Glycobiology, Genos Ltd., Planinska 1, 10000 Zagreb, Croatia.

View Article

Download full-text PDF

Source
http://pubs.acs.org/doi/10.1021/pr300887z
Publisher Site
http://dx.doi.org/10.1021/pr300887zDOI Listing
February 2013

High-throughput work flow for IgG Fc-glycosylation analysis of biotechnological samples.

Anal Biochem 2013 Jan 28;432(2):82-9. Epub 2012 Sep 28.

Pharma Biotech Development Penzberg, Roche Diagnostics GmbH, 82377 Penzberg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ab.2012.09.032DOI Listing
January 2013

Improved classification of breast cancer peptide and protein profiles by combining two serum workup procedures.

J Cancer Res Clin Oncol 2012 Dec 5;138(12):1983-92. Epub 2012 Jul 5.

Department of Surgery, Leiden University Medical Center (LUMC), Albinusdreef 2, 2333 ZA, Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00432-012-1273-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3491194PMC
December 2012

Standardized and automated solid-phase extraction procedures for high-throughput proteomics of body fluids.

J Proteomics 2012 Dec 26;77:144-53. Epub 2012 Jul 26.

Leiden University Medical Center (LUMC), Department of Parasitology, Biomolecular Mass Spectrometry Unit, Albinusdreef 2, 2300 RC, Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jprot.2012.07.023DOI Listing
December 2012

Glycoproteomic analysis of human fibrinogen reveals novel regions of O-glycosylation.

J Proteome Res 2012 Dec 29;11(12):5804-14. Epub 2012 Oct 29.

Department of Parasitology, Biomolecular Mass Spectrometry Unit, Leiden University Medical Center, Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/pr3005937DOI Listing
December 2012

Metabolic profiling of mouse cerebrospinal fluid by sheathless CE-MS.

Anal Bioanal Chem 2012 Dec 7;404(10):2895-900. Epub 2012 Oct 7.

Biomolecular Mass Spectrometry Unit, Leiden University Medical Center, Albinusdreef 2, 2333 ZA Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00216-012-6431-7DOI Listing
December 2012

(1)H NMR-based metabolic profiling of urinary tract infection: combining multiple statistical models and clinical data.

Metabolomics 2012 Dec 29;8(6):1227-1235. Epub 2012 Feb 29.

Biomolecular Mass Spectrometry Unit, Department of Parasitology, Leiden University Medical Center, Albinusdreef 2, 2333ZA Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s11306-012-0411-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3483096PMC
December 2012

Lipid and lipid mediator profiling of human synovial fluid in rheumatoid arthritis patients by means of LC-MS/MS.

Biochim Biophys Acta 2012 Nov 24;1821(11):1415-24. Epub 2012 Jul 24.

Biomolecular Mass Spectrometry Unit, Department of Parasitology, Leiden University Medical Center, Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.bbalip.2012.07.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3433634PMC
November 2012

Cloud parallel processing of tandem mass spectrometry based proteomics data.

J Proteome Res 2012 Oct 5;11(10):5101-8. Epub 2012 Sep 5.

Biomolecular Mass Spectrometry Unit, Department of Parasitology, Leiden University Medical Center, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/pr300561qDOI Listing
October 2012

Robust and high-throughput sample preparation for (semi-)quantitative analysis of N-glycosylation profiles from plasma samples.

Methods Mol Biol 2012 ;893:371-85

Department of Parasitology, Biomolecular Mass Spectrometry Unit, Leiden University Medical Center, Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://link.springer.com/10.1007/978-1-61779-885-6_23
Publisher Site
http://dx.doi.org/10.1007/978-1-61779-885-6_23DOI Listing
September 2012

Identification of human serum peptides in fourier transform ion cyclotron resonance precision profiles.

Int J Proteomics 2012 22;2012:804036. Epub 2012 May 22.

Department of Parasitology, Biomolecular Mass Spectrometry Unit, Leiden University Medical Center (LUMC), Albinusdreef 2, 2300 RC Leiden, The Netherlands.

View Article

Download full-text PDF

Source
https://www.hindawi.com/archive/2012/804036/
Publisher Site
http://dx.doi.org/10.1155/2012/804036DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3364581PMC
August 2012

Imaging mass spectrometry statistical analysis.

J Proteomics 2012 Aug 26;75(16):4962-4989. Epub 2012 Jun 26.

Biomolecular Mass Spectrometry Unit, Department of Parasitology, Leiden University Medical Center, Leiden, The Netherlands. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jprot.2012.06.014DOI Listing
August 2012

Temperature-dependent instability of the cTnI subunit in NIST SRM2921 characterized by tryptic peptide mapping.

J Chromatogr B Analyt Technol Biomed Life Sci 2012 Aug 26;902:147-50. Epub 2012 Jun 26.

Leiden University Medical Center (LUMC), Department of Parasitology, Biomolecular Mass Spectrometry Unit, Albinusdreef 2, 2300 RC, Leiden, The Netherlands. Y.E.M.van der

View Article

Download full-text PDF

Source
http://linkinghub.elsevier.com/retrieve/pii/S157002321200365
Publisher Site
http://dx.doi.org/10.1016/j.jchromb.2012.06.020DOI Listing
August 2012

Imaging mass spectrometry to visualize biomolecule distributions in mouse brain tissue following hemispheric cortical spreading depression.

J Proteomics 2012 Aug 6;75(16):5027-5035. Epub 2012 Jul 6.

Biomolecular Mass Spectrometry Unit, Department of Parasitology, Leiden University Medical Center, Leiden, the Netherlands. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jprot.2012.06.025DOI Listing
August 2012

Protein O-glycosylation analysis.

Biol Chem 2012 Aug;393(8):687-708

Biomolecular Mass Spectrometry Unit, Department of Parasitology, Leiden University Medical Center, P.O. Box 9600, NL-2300 RC Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1515/hsz-2012-0144DOI Listing
August 2012

Scientific workflow management in proteomics.

Mol Cell Proteomics 2012 Jul 12;11(7):M111.010595. Epub 2012 Mar 12.

Section for Medical Expert and Knowledge-Based Systems, Center for Medical Statistics, Informatics, and Intelligent Systems, Medical University of Vienna, Spitalgasse 23, A-1090 Vienna, Austria.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1074/mcp.M111.010595DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3394934PMC
July 2012

Glycotope sharing between snail hemolymph and larval schistosomes: larval transformation products alter shared glycan patterns of plasma proteins.

PLoS Negl Trop Dis 2012 20;6(3):e1569. Epub 2012 Mar 20.

Department of Pathobiological Sciences, University of Wisconsin School of Veterinary Medicine, Madison, Wisconsin, USA.

View Article

Download full-text PDF

Source
https://dx.plos.org/10.1371/journal.pntd.0001569
Publisher Site
http://dx.doi.org/10.1371/journal.pntd.0001569DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3308936PMC
July 2012

Rac1 acts in conjunction with Nedd4 and dishevelled-1 to promote maturation of cell-cell contacts.

J Cell Sci 2012 Jul 30;125(Pt 14):3430-42. Epub 2012 Mar 30.

Department of Molecular Cell Biology, Sanquin Research and Landsteiner Laboratory, Academic Medical Center, University of Amsterdam, Amsterdam, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1242/jcs.100925DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3516380PMC
July 2012

CE-MS for proteomics: Advances in interface development and application.

J Proteomics 2012 Jul 17;75(13):3814-28. Epub 2012 May 17.

Biomolecular Mass Spectrometry Unit, Department of Parasitology, Leiden University Medical Center, Albinusdreef 2, 2300 RC, Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://linkinghub.elsevier.com/retrieve/pii/S187439191200302
Publisher Site
http://dx.doi.org/10.1016/j.jprot.2012.04.050DOI Listing
July 2012

Analysis of urinary oligosaccharides in lysosomal storage disorders by capillary high-performance anion-exchange chromatography-mass spectrometry.

Anal Bioanal Chem 2012 Jun 20;403(6):1671-83. Epub 2012 Apr 20.

Biomolecular Mass Spectrometry Unit, Department of Parasitology, Leiden University Medical Center, P.O. Box 9600, 2300 RC Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://link.springer.com/10.1007/s00216-012-5968-9
Publisher Site
http://dx.doi.org/10.1007/s00216-012-5968-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3354319PMC
June 2012

Proteomic analysis of Taenia solium metacestode excretion-secretion proteins.

Proteomics 2012 Jun;12(11):1860-9

Veterinary Helminthology Unit, Department of Biomedical Sciences, Institute of Tropical Medicine, Antwerp, Belgium.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/pmic.201100496DOI Listing
June 2012

Ultra-low flow electrospray ionization-mass spectrometry for improved ionization efficiency in phosphoproteomics.

Anal Chem 2012 May 26;84(10):4552-9. Epub 2012 Apr 26.

Department of Parasitology, Leiden University Medical Center, Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/ac300641xDOI Listing
May 2012

The human lactoferrin-derived peptide hLF1-11 exerts immunomodulatory effects by specific inhibition of myeloperoxidase activity.

J Immunol 2012 May 20;188(10):5012-9. Epub 2012 Apr 20.

Department of Infectious Diseases, Leiden University Medical Center, Leiden, 2333 ZA, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.4049/jimmunol.1102777DOI Listing
May 2012

Metabolomic investigations of human infections.

Bioanalysis 2012 May;4(8):919-25

LUMC, Biomolecular Mass Spectrometry Unit, Leiden University Medical Centre, L4-Q, PO Box 9600, 2300RC Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://www.future-science.com/doi/10.4155/bio.12.61
Publisher Site
http://dx.doi.org/10.4155/bio.12.61DOI Listing
May 2012

MALDI-TOF-MS analysis of sialylated glycans and glycopeptides using 4-chloro-α-cyanocinnamic acid matrix.

Proteomics 2012 May;12(9):1337-48

Biomolecular Mass Spectrometry Unit, Department of Parasitology, Leiden University Medical Center, Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/pmic.201100498DOI Listing
May 2012

Changes in antigen-specific IgG1 Fc N-glycosylation upon influenza and tetanus vaccination.

Mol Cell Proteomics 2012 Apr 19;11(4):M111.014563. Epub 2011 Dec 19.

Department of Parasitology, Leiden University Medical Center, Leiden, the Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1074/mcp.M111.014563DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3322571PMC
April 2012

High speed data processing for imaging MS-based molecular histology using graphical processing units.

J Am Soc Mass Spectrom 2012 Apr 4;23(4):745-52. Epub 2012 Feb 4.

Biomolecular Mass Spectrometry Unit, Department of Parasitology, Leiden University Medical Center, Albinusdreef 2, 2333ZA, Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s13361-011-0327-1DOI Listing
April 2012

Molecular phylogenetics by direct comparison of tandem mass spectra.

Rapid Commun Mass Spectrom 2012 Apr;26(7):728-32

Biomolecular Mass Spectrometry Unit, Department of Parasitology, Leiden University Medical Center, P.O. Box 9600, 2300, RC, Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/rcm.6162DOI Listing
April 2012

A novel peptidomics approach to detect markers of Alzheimer's disease in cerebrospinal fluid.

Methods 2012 Apr 24;56(4):500-7. Epub 2012 Mar 24.

Biomolecular Mass Spectrometry Unit, Department of Parasitology, Leiden University Medical Center, Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ymeth.2012.03.018DOI Listing
April 2012

Human in vivo longevity is reflected in vitro by differential metabolism as measured by (1)H-NMR profiling of cell culture supernatants.

Mol Biosyst 2012 Mar 4;8(3):783-9. Epub 2012 Jan 4.

Department of Gerontology and Geriatrics, Leiden University Medical Center, RC Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1039/c2mb05237gDOI Listing
March 2012

Top-down FTICR MS for the identification of fluorescent labeling efficiency and specificity of the Cu-protein azurin.

Anal Chem 2012 Mar 23;84(5):2512-20. Epub 2012 Feb 23.

Biomolecular Mass Spectrometry Unit, Leiden University Medical Center, P.O. Box 9600, 2300 RC Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/ac203370fDOI Listing
March 2012

Partially sequenced organisms, decoy searches and false discovery rates.

J Proteome Res 2012 Mar 16;11(3):1991-5. Epub 2012 Feb 16.

Veterinary Helminthology Unit, Department of Biomedical Sciences, Institute of Tropical Medicine (ITM) , Antwerp, Belgium.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/pr201035rDOI Listing
March 2012

Hexapeptide library as a universal tool for sample preparation in protein glycosylation analysis.

J Proteomics 2012 Feb 2;75(5):1515-28. Epub 2011 Dec 2.

Forschungszentrum Jülich, Central Division of Analytical Chemistry, Jülich, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jprot.2011.11.028DOI Listing
February 2012

Enhancing the coverage of the urinary metabolome by sheathless capillary electrophoresis-mass spectrometry.

Anal Chem 2012 Jan 30;84(2):885-92. Epub 2011 Dec 30.

Biomolecular Mass Spectrometry Unit, Department of Parasitology, Leiden University Medical Center, Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/ac202407vDOI Listing
January 2012

Recent advances in hydrophilic interaction liquid chromatography (HILIC) for structural glycomics.

Electrophoresis 2011 Dec;32(24):3456-66

Department of Parasitology, Leiden University Medical Center, Leiden, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/elps.201100247DOI Listing
December 2011