Publications by authors named "Andre E R Soares"

13 Publications

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Dense sampling of bird diversity increases power of comparative genomics.

Authors:
Shaohong Feng Josefin Stiller Yuan Deng Joel Armstrong Qi Fang Andrew Hart Reeve Duo Xie Guangji Chen Chunxue Guo Brant C Faircloth Bent Petersen Zongji Wang Qi Zhou Mark Diekhans Wanjun Chen Sergio Andreu-Sánchez Ashot Margaryan Jason Travis Howard Carole Parent George Pacheco Mikkel-Holger S Sinding Lara Puetz Emily Cavill Ângela M Ribeiro Leopold Eckhart Jon Fjeldså Peter A Hosner Robb T Brumfield Les Christidis Mads F Bertelsen Thomas Sicheritz-Ponten Dieter Thomas Tietze Bruce C Robertson Gang Song Gerald Borgia Santiago Claramunt Irby J Lovette Saul J Cowen Peter Njoroge John Philip Dumbacher Oliver A Ryder Jérôme Fuchs Michael Bunce David W Burt Joel Cracraft Guanliang Meng Shannon J Hackett Peter G Ryan Knud Andreas Jønsson Ian G Jamieson Rute R da Fonseca Edward L Braun Peter Houde Siavash Mirarab Alexander Suh Bengt Hansson Suvi Ponnikas Hanna Sigeman Martin Stervander Paul B Frandsen Henriette van der Zwan Rencia van der Sluis Carina Visser Christopher N Balakrishnan Andrew G Clark John W Fitzpatrick Reed Bowman Nancy Chen Alison Cloutier Timothy B Sackton Scott V Edwards Dustin J Foote Subir B Shakya Frederick H Sheldon Alain Vignal André E R Soares Beth Shapiro Jacob González-Solís Joan Ferrer-Obiol Julio Rozas Marta Riutort Anna Tigano Vicki Friesen Love Dalén Araxi O Urrutia Tamás Székely Yang Liu Michael G Campana André Corvelo Robert C Fleischer Kim M Rutherford Neil J Gemmell Nicolas Dussex Henrik Mouritsen Nadine Thiele Kira Delmore Miriam Liedvogel Andre Franke Marc P Hoeppner Oliver Krone Adam M Fudickar Borja Milá Ellen D Ketterson Andrew Eric Fidler Guillermo Friis Ángela M Parody-Merino Phil F Battley Murray P Cox Nicholas Costa Barroso Lima Francisco Prosdocimi Thomas Lee Parchman Barney A Schlinger Bette A Loiselle John G Blake Haw Chuan Lim Lainy B Day Matthew J Fuxjager Maude W Baldwin Michael J Braun Morgan Wirthlin Rebecca B Dikow T Brandt Ryder Glauco Camenisch Lukas F Keller Jeffrey M DaCosta Mark E Hauber Matthew I M Louder Christopher C Witt Jimmy A McGuire Joann Mudge Libby C Megna Matthew D Carling Biao Wang Scott A Taylor Glaucia Del-Rio Alexandre Aleixo Ana Tereza Ribeiro Vasconcelos Claudio V Mello Jason T Weir David Haussler Qiye Li Huanming Yang Jian Wang Fumin Lei Carsten Rahbek M Thomas P Gilbert Gary R Graves Erich D Jarvis Benedict Paten Guojie Zhang

Nature 2020 11 11;587(7833):252-257. Epub 2020 Nov 11.

China National GeneBank, BGI-Shenzhen, Shenzhen, China.

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November 2020

Hybridization Capture of Ancient DNA Using RNA Baits.

Methods Mol Biol 2019 ;1963:121-128

Laboratório Nacional de Computação Científica, Petrópolis, RJ, Brazil.

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September 2019

Fossil and genomic evidence constrains the timing of bison arrival in North America.

Proc Natl Acad Sci U S A 2017 03 13;114(13):3457-3462. Epub 2017 Mar 13.

Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA 95064;

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March 2017

Complete mitochondrial genomes of living and extinct pigeons revise the timing of the columbiform radiation.

BMC Evol Biol 2016 10 26;16(1):230. Epub 2016 Oct 26.

Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, 1156 High Street, Santa Cruz, CA, 95064, USA.

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October 2016

Inferring species divergence times using pairwise sequential Markovian coalescent modelling and low-coverage genomic data.

Philos Trans R Soc Lond B Biol Sci 2016 07;371(1699)

Department of Ecology and Evolutionary Biology, University of California Santa Cruz, 1156 High Street, Santa Cruz, CA 95060, USA

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July 2016

Bison phylogeography constrains dispersal and viability of the Ice Free Corridor in western Canada.

Proc Natl Acad Sci U S A 2016 07 6;113(29):8057-63. Epub 2016 Jun 6.

Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA 95064; University of California Santa Cruz Genomics Institute, University of California, Santa Cruz, CA 95064

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July 2016

The influence of taxon sampling on Bayesian divergence time inference under scenarios of rate heterogeneity among lineages.

J Theor Biol 2015 Jan 11;364:31-9. Epub 2014 Sep 11.

Department of Genetics, Federal University of Rio de Janeiro, Rio de Janeiro 21941-590, Brazil. Electronic address:

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January 2015

The influence of taxon sampling and tree shape on molecular dating: an empirical example from Mammalian mitochondrial genomes.

Bioinform Biol Insights 2012 31;6:129-43. Epub 2012 May 31.

Department of Genetics, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil.

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August 2012

Positive selection on HIV accessory proteins and the analysis of molecular adaptation after interspecies transmission.

J Mol Evol 2008 Jun 9;66(6):598-604. Epub 2008 May 9.

Departamento de Genética, Universidade Federal do Rio de Janeiro, Ilha do Fundao, Rio de Janeiro, RJ CEP 21.941-590, Brazil.

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June 2008