Publications by authors named "Anason Halees"

17Publications

Drug-resistance profiling and transmission dynamics of multidrug-resistant in Saudi Arabia revealed by whole genome sequencing.

Infect Drug Resist 2018 12;11:2219-2229. Epub 2018 Nov 12.

Mycobacteriology Research Section, Department of Infection and Immunity, King Faisal Specialist Hospital and Research Center, Riyadh 11211, Saudi Arabia,

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http://dx.doi.org/10.2147/IDR.S181124DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6237142PMC
November 2018

Revisiting disease genes based on whole-exome sequencing in consanguineous populations.

Hum Genet 2015 Sep 4;134(9):1029-34. Epub 2015 Jul 4.

Developmental Genetics Unit, Department of Genetics, King Faisal Specialist Hospital and Research Center, MBC-03, PO BOX 3354, Riyadh, 11211, Saudi Arabia.

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http://dx.doi.org/10.1007/s00439-015-1580-3DOI Listing
September 2015

Autozygome sequencing expands the horizon of human knockout research and provides novel insights into human phenotypic variation.

PLoS Genet 2013 19;9(12):e1004030. Epub 2013 Dec 19.

Department of Genetics, King Faisal Specialist Hospital and Research Center, Riyadh, Saudi Arabia ; Department of Anatomy and Cell Biology, College of Medicine, Alfaisal University, Riyadh, Saudi Arabia.

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http://dx.doi.org/10.1371/journal.pgen.1004030DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3868571PMC
August 2014

Global assessment of GU-rich regulatory content and function in the human transcriptome.

RNA Biol 2011 Jul-Aug;8(4):681-91. Epub 2011 Jul 1.

The BioMolecular Research Program at King Faisal Specialist Hospital and Research Center, Riyadh, Saudi Arabia.

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http://dx.doi.org/10.4161/rna.8.4.16283DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3225982PMC
April 2012

AU-rich elements regulate Drosophila gene expression.

Mol Cell Biol 2009 May 9;29(10):2636-43. Epub 2009 Mar 9.

CBD, UMR 5547, CNRS-UPS, 31062 Toulouse Cedex 4, France.

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http://dx.doi.org/10.1128/MCB.01506-08DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2682044PMC
May 2009

ARED Organism: expansion of ARED reveals AU-rich element cluster variations between human and mouse.

Nucleic Acids Res 2008 Jan 4;36(Database issue):D137-40. Epub 2007 Nov 4.

The Biomolecular Research Program, King Faisal Specialist Hospital and Research Center, Riyadh 11211, Saudi Arabia.

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http://dx.doi.org/10.1093/nar/gkm959DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238997PMC
January 2008

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

Authors:
Ewan Birney John A Stamatoyannopoulos Anindya Dutta Roderic Guigó Thomas R Gingeras Elliott H Margulies Zhiping Weng Michael Snyder Emmanouil T Dermitzakis Robert E Thurman Michael S Kuehn Christopher M Taylor Shane Neph Christoph M Koch Saurabh Asthana Ankit Malhotra Ivan Adzhubei Jason A Greenbaum Robert M Andrews Paul Flicek Patrick J Boyle Hua Cao Nigel P Carter Gayle K Clelland Sean Davis Nathan Day Pawandeep Dhami Shane C Dillon Michael O Dorschner Heike Fiegler Paul G Giresi Jeff Goldy Michael Hawrylycz Andrew Haydock Richard Humbert Keith D James Brett E Johnson Ericka M Johnson Tristan T Frum Elizabeth R Rosenzweig Neerja Karnani Kirsten Lee Gregory C Lefebvre Patrick A Navas Fidencio Neri Stephen C J Parker Peter J Sabo Richard Sandstrom Anthony Shafer David Vetrie Molly Weaver Sarah Wilcox Man Yu Francis S Collins Job Dekker Jason D Lieb Thomas D Tullius Gregory E Crawford Shamil Sunyaev William S Noble Ian Dunham France Denoeud Alexandre Reymond Philipp Kapranov Joel Rozowsky Deyou Zheng Robert Castelo Adam Frankish Jennifer Harrow Srinka Ghosh Albin Sandelin Ivo L Hofacker Robert Baertsch Damian Keefe Sujit Dike Jill Cheng Heather A Hirsch Edward A Sekinger Julien Lagarde Josep F Abril Atif Shahab Christoph Flamm Claudia Fried Jörg Hackermüller Jana Hertel Manja Lindemeyer Kristin Missal Andrea Tanzer Stefan Washietl Jan Korbel Olof Emanuelsson Jakob S Pedersen Nancy Holroyd Ruth Taylor David Swarbreck Nicholas Matthews Mark C Dickson Daryl J Thomas Matthew T Weirauch James Gilbert Jorg Drenkow Ian Bell XiaoDong Zhao K G Srinivasan Wing-Kin Sung Hong Sain Ooi Kuo Ping Chiu Sylvain Foissac Tyler Alioto Michael Brent Lior Pachter Michael L Tress Alfonso Valencia Siew Woh Choo Chiou Yu Choo Catherine Ucla Caroline Manzano Carine Wyss Evelyn Cheung Taane G Clark James B Brown Madhavan Ganesh Sandeep Patel Hari Tammana Jacqueline Chrast Charlotte N Henrichsen Chikatoshi Kai Jun Kawai Ugrappa Nagalakshmi Jiaqian Wu Zheng Lian Jin Lian Peter Newburger Xueqing Zhang Peter Bickel John S Mattick Piero Carninci Yoshihide Hayashizaki Sherman Weissman Tim Hubbard Richard M Myers Jane Rogers Peter F Stadler Todd M Lowe Chia-Lin Wei Yijun Ruan Kevin Struhl Mark Gerstein Stylianos E Antonarakis Yutao Fu Eric D Green Ulaş Karaöz Adam Siepel James Taylor Laura A Liefer Kris A Wetterstrand Peter J Good Elise A Feingold Mark S Guyer Gregory M Cooper George Asimenos Colin N Dewey Minmei Hou Sergey Nikolaev Juan I Montoya-Burgos Ari Löytynoja Simon Whelan Fabio Pardi Tim Massingham Haiyan Huang Nancy R Zhang Ian Holmes James C Mullikin Abel Ureta-Vidal Benedict Paten Michael Seringhaus Deanna Church Kate Rosenbloom W James Kent Eric A Stone Serafim Batzoglou Nick Goldman Ross C Hardison David Haussler Webb Miller Arend Sidow Nathan D Trinklein Zhengdong D Zhang Leah Barrera Rhona Stuart David C King Adam Ameur Stefan Enroth Mark C Bieda Jonghwan Kim Akshay A Bhinge Nan Jiang Jun Liu Fei Yao Vinsensius B Vega Charlie W H Lee Patrick Ng Atif Shahab Annie Yang Zarmik Moqtaderi Zhou Zhu Xiaoqin Xu Sharon Squazzo Matthew J Oberley David Inman Michael A Singer Todd A Richmond Kyle J Munn Alvaro Rada-Iglesias Ola Wallerman Jan Komorowski Joanna C Fowler Phillippe Couttet Alexander W Bruce Oliver M Dovey Peter D Ellis Cordelia F Langford David A Nix Ghia Euskirchen Stephen Hartman Alexander E Urban Peter Kraus Sara Van Calcar Nate Heintzman Tae Hoon Kim Kun Wang Chunxu Qu Gary Hon Rosa Luna Christopher K Glass M Geoff Rosenfeld Shelley Force Aldred Sara J Cooper Anason Halees Jane M Lin Hennady P Shulha Xiaoling Zhang Mousheng Xu Jaafar N S Haidar Yong Yu Yijun Ruan Vishwanath R Iyer Roland D Green Claes Wadelius Peggy J Farnham Bing Ren Rachel A Harte Angie S Hinrichs Heather Trumbower Hiram Clawson Jennifer Hillman-Jackson Ann S Zweig Kayla Smith Archana Thakkapallayil Galt Barber Robert M Kuhn Donna Karolchik Lluis Armengol Christine P Bird Paul I W de Bakker Andrew D Kern Nuria Lopez-Bigas Joel D Martin Barbara E Stranger Abigail Woodroffe Eugene Davydov Antigone Dimas Eduardo Eyras Ingileif B Hallgrímsdóttir Julian Huppert Michael C Zody Gonçalo R Abecasis Xavier Estivill Gerard G Bouffard Xiaobin Guan Nancy F Hansen Jacquelyn R Idol Valerie V B Maduro Baishali Maskeri Jennifer C McDowell Morgan Park Pamela J Thomas Alice C Young Robert W Blakesley Donna M Muzny Erica Sodergren David A Wheeler Kim C Worley Huaiyang Jiang George M Weinstock Richard A Gibbs Tina Graves Robert Fulton Elaine R Mardis Richard K Wilson Michele Clamp James Cuff Sante Gnerre David B Jaffe Jean L Chang Kerstin Lindblad-Toh Eric S Lander Maxim Koriabine Mikhail Nefedov Kazutoyo Osoegawa Yuko Yoshinaga Baoli Zhu Pieter J de Jong
June 2007

Analysis of overrepresented motifs in human core promoters reveals dual regulatory roles of YY1.

Genome Res 2007 Jun;17(6):798-806

Bioinformatics Program, Boston University, Boston, Massachusetts 02215, USA.

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http://dx.doi.org/10.1101/gr.5754707DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1891339PMC
June 2007

SeqVISTA: a new module of integrated computational tools for studying transcriptional regulation.

Nucleic Acids Res 2004 Jul;32(Web Server issue):W235-41

Bioinformatics Program, Boston University, 44 Cummington Street, Boston, MA 02215, USA.

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http://dx.doi.org/10.1093/nar/gkh483DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC441621PMC
July 2004

PromoSer: improvements to the algorithm, visualization and accessibility.

Nucleic Acids Res 2004 Jul;32(Web Server issue):W191-4

Bioinformatics Program, Boston University, 44 Cummington Street, Boston, MA 02215, USA.

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http://dx.doi.org/10.1093/nar/gkh433DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC441571PMC
July 2004

Site2genome: locating short DNA sequences in whole genomes.

Bioinformatics 2004 Jun 12;20(9):1468-9. Epub 2004 Feb 12.

Bioinformatics Program, Boston University, MA 02215, USA.

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http://dx.doi.org/10.1093/bioinformatics/bth094DOI Listing
June 2004

PromoSer: A large-scale mammalian promoter and transcription start site identification service.

Nucleic Acids Res 2003 Jul;31(13):3554-9

Bioinformatics Program, Boston University, 44 Cummington Street, Boston, MA 02215, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC168956PMC
http://dx.doi.org/10.1093/nar/gkg549DOI Listing
July 2003

Learning curves for Gaussian process regression: approximations and bounds.

Neural Comput 2002 Jun;14(6):1393-428

Department of Mathematics, King's College London, London WC2R 2LS, UK.

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http://dx.doi.org/10.1162/089976602753712990DOI Listing
June 2002