Ananth Kalyanaraman

Ananth Kalyanaraman

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Ananth Kalyanaraman

Ananth Kalyanaraman

Publications by authors named "Ananth Kalyanaraman"

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11Publications

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Efficient Detection of Communities in Biological Bipartite Networks.

IEEE/ACM Trans Comput Biol Bioinform 2019 Jan-Feb;16(1):258-271. Epub 2017 Nov 22.

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http://dx.doi.org/10.1109/TCBB.2017.2765319DOI Listing
August 2019

Alignment-free clustering of large data sets of unannotated protein conserved regions using minhashing.

BMC Bioinformatics 2018 03 5;19(1):83. Epub 2018 Mar 5.

School of EECS, Washington State University, 355 NE Spokane St, Pullman, 99164, USA.

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http://dx.doi.org/10.1186/s12859-018-2080-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5838936PMC
March 2018

FastEtch: A Fast Sketch-Based Assembler for Genomes.

IEEE/ACM Trans Comput Biol Bioinform 2019 Jul-Aug;16(4):1091-1106. Epub 2017 Sep 11.

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http://dx.doi.org/10.1109/TCBB.2017.2737999DOI Listing
September 2017

A Fast Alignment-Free Approach for De Novo Detection of Protein Conserved Regions.

PLoS One 2016 23;11(8):e0161338. Epub 2016 Aug 23.

School of EECS, Washington State University, Pullman, WA, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0161338PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4995020PMC
July 2017

CisSERS: Customizable In Silico Sequence Evaluation for Restriction Sites.

PLoS One 2016 12;11(4):e0152404. Epub 2016 Apr 12.

Molecular Plant Sciences Graduate Program, Washington State University, Pullman, Washington, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0152404PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4829253PMC
August 2016

Proteotyping of microbial communities by optimization of tandem mass spectrometry data interpretation.

Pac Symp Biocomput 2012 :225-34

Computational Biology and Bioinformatics Group, Pacific Northwest National Laboratory, Richland, WA 99352, USA.

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December 2013

MapReduce implementation of a hybrid spectral library-database search method for large-scale peptide identification.

Bioinformatics 2011 Nov 16;27(21):3072-3. Epub 2011 Sep 16.

School of Electrical Engineering and Computer Science, Washington State University, Pullman, WA 99164-2752, USA.

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http://dx.doi.org/10.1093/bioinformatics/btr523DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3198583PMC
November 2011

Attenuation of virulence in an apicomplexan hemoparasite results in reduced genome diversity at the population level.

BMC Genomics 2011 Aug 12;12:410. Epub 2011 Aug 12.

Programs in Genomics and Vector-borne Diseases, Department of Veterinary Microbiology & Pathology and Paul G, Allen School for Global Animal Health, College of Veterinary Medicine, Washington State University, Pullman, USA.

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http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2164-12-410DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3166950PMC
August 2011

The genome of the domesticated apple (Malus × domestica Borkh.).

Nat Genet 2010 Oct 29;42(10):833-9. Epub 2010 Aug 29.

Istituto Agrario San Michele all'Adige Research and Innovation Centre, Foundation Edmund Mach, Trento, Italy.

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http://dx.doi.org/10.1038/ng.654DOI Listing
October 2010

The B73 maize genome: complexity, diversity, and dynamics.

Authors:
Patrick S Schnable Doreen Ware Robert S Fulton Joshua C Stein Fusheng Wei Shiran Pasternak Chengzhi Liang Jianwei Zhang Lucinda Fulton Tina A Graves Patrick Minx Amy Denise Reily Laura Courtney Scott S Kruchowski Chad Tomlinson Cindy Strong Kim Delehaunty Catrina Fronick Bill Courtney Susan M Rock Eddie Belter Feiyu Du Kyung Kim Rachel M Abbott Marc Cotton Andy Levy Pamela Marchetto Kerri Ochoa Stephanie M Jackson Barbara Gillam Weizu Chen Le Yan Jamey Higginbotham Marco Cardenas Jason Waligorski Elizabeth Applebaum Lindsey Phelps Jason Falcone Krishna Kanchi Thynn Thane Adam Scimone Nay Thane Jessica Henke Tom Wang Jessica Ruppert Neha Shah Kelsi Rotter Jennifer Hodges Elizabeth Ingenthron Matt Cordes Sara Kohlberg Jennifer Sgro Brandon Delgado Kelly Mead Asif Chinwalla Shawn Leonard Kevin Crouse Kristi Collura Dave Kudrna Jennifer Currie Ruifeng He Angelina Angelova Shanmugam Rajasekar Teri Mueller Rene Lomeli Gabriel Scara Ara Ko Krista Delaney Marina Wissotski Georgina Lopez David Campos Michele Braidotti Elizabeth Ashley Wolfgang Golser HyeRan Kim Seunghee Lee Jinke Lin Zeljko Dujmic Woojin Kim Jayson Talag Andrea Zuccolo Chuanzhu Fan Aswathy Sebastian Melissa Kramer Lori Spiegel Lidia Nascimento Theresa Zutavern Beth Miller Claude Ambroise Stephanie Muller Will Spooner Apurva Narechania Liya Ren Sharon Wei Sunita Kumari Ben Faga Michael J Levy Linda McMahan Peter Van Buren Matthew W Vaughn Kai Ying Cheng-Ting Yeh Scott J Emrich Yi Jia Ananth Kalyanaraman An-Ping Hsia W Brad Barbazuk Regina S Baucom Thomas P Brutnell Nicholas C Carpita Cristian Chaparro Jer-Ming Chia Jean-Marc Deragon James C Estill Yan Fu Jeffrey A Jeddeloh Yujun Han Hyeran Lee Pinghua Li Damon R Lisch Sanzhen Liu Zhijie Liu Dawn Holligan Nagel Maureen C McCann Phillip SanMiguel Alan M Myers Dan Nettleton John Nguyen Bryan W Penning Lalit Ponnala Kevin L Schneider David C Schwartz Anupma Sharma Carol Soderlund Nathan M Springer Qi Sun Hao Wang Michael Waterman Richard Westerman Thomas K Wolfgruber Lixing Yang Yeisoo Yu Lifang Zhang Shiguo Zhou Qihui Zhu Jeffrey L Bennetzen R Kelly Dawe Jiming Jiang Ning Jiang Gernot G Presting Susan R Wessler Srinivas Aluru Robert A Martienssen Sandra W Clifton W Richard McCombie Rod A Wing Richard K Wilson

Science 2009 Nov;326(5956):1112-5

Center for Plant Genomics, Iowa State University, Ames, IA 50011, USA.

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http://www.dawelab.org/wp-content/uploads/2011/03/schnable-2
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http://www.sciencemag.org/cgi/doi/10.1126/science.1178534
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http://dx.doi.org/10.1126/science.1178534DOI Listing
November 2009