Ana Damjanović

Ana Damjanović

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Ana Damjanović

Ana Damjanović

Publications by authors named "Ana Damjanović"

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Protonation state of the selectivity filter of bacterial voltage-gated sodium channels is modulated by ions.

Proteins 2020 Mar 12;88(3):527-539. Epub 2019 Nov 12.

Laboratory of Computational Biology, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, Maryland.

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http://dx.doi.org/10.1002/prot.25831DOI Listing
March 2020

Integration of dry-column flash chromatography with NMR and FTIR metabolomics to reveal cytotoxic metabolites from Amphoricarpos autariatus.

Talanta 2020 Jan 10;206:120248. Epub 2019 Aug 10.

Institute of Chemistry, Technology and Metallurgy, National Institute, University of Belgrade, Studentskitrg12-16, 11000, Belgrade, Serbia. Electronic address:

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http://dx.doi.org/10.1016/j.talanta.2019.120248DOI Listing
January 2020

Mechanisms of Chemotherapy Resistance in Triple-Negative Breast Cancer-How We Can Rise to the Challenge.

Cells 2019 08 22;8(9). Epub 2019 Aug 22.

Institute of Oncology and Radiology of Serbia, Pasterova 14, 11000 Belgrade, Serbia.

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http://dx.doi.org/10.3390/cells8090957DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6770896PMC
August 2019

Comparative in vitro studies of the biological potential and chemical composition of stems, leaves and berries Aronia melanocarpa's extracts obtained by subcritical water extraction.

Food Chem Toxicol 2018 Nov 21;121:458-466. Epub 2018 Sep 21.

Department of Chemistry, Faculty of Science and Mathematics, University of Niš, Višegradska 33, 18000, Niš, Serbia.

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http://dx.doi.org/10.1016/j.fct.2018.09.045DOI Listing
November 2018

Reservoir pH replica exchange.

J Chem Phys 2018 Aug;149(7):072321

Laboratory of Computational Biology, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, Maryland 20892-5690, USA.

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http://dx.doi.org/10.1063/1.5027413DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6005788PMC
August 2018

Synthesis, characterization and biological evaluation of Pd(ii), Cu(ii), Re(i) and Tc(i) thiazole-based complexes.

Medchemcomm 2018 May 13;9(5):831-842. Epub 2018 Apr 13.

Department of Pharmaceutical Chemistry , School of Pharmacy , Faculty of Health Sciences , Aristotle University of Thessaloniki , 54124 University Campus , Thessaloniki , Greece . Email: ; ; Tel: +30 2310 998680.

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http://dx.doi.org/10.1039/c8md00067kDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6072317PMC
May 2018

Identification of cytotoxic metabolites from Mahonia aquifolium using H NMR-based metabolomics approach.

J Pharm Biomed Anal 2018 Feb 1;150:9-14. Epub 2017 Dec 1.

Institute for Medicinal Plant Research "Dr. Josif Pančić", Tadeuša Košćuška 1, 11000 Belgrade, Serbia.

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https://linkinghub.elsevier.com/retrieve/pii/S07317085173249
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http://dx.doi.org/10.1016/j.jpba.2017.11.075DOI Listing
February 2018

Absolute binding free energy calculations of CBClip host-guest systems in the SAMPL5 blind challenge.

J Comput Aided Mol Des 2017 01 27;31(1):71-85. Epub 2016 Sep 27.

Laboratory of Computational Biology, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, MD, 20852, USA.

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http://dx.doi.org/10.1007/s10822-016-9968-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5241186PMC
January 2017

Enhancing constant-pH simulation in explicit solvent with a two-dimensional replica exchange method.

J Chem Theory Comput 2015 Jun 26;11(6):2560-74. Epub 2015 May 26.

Laboratory of Computational Biology, National Heart, Lung, and Blood Institute, National Institutes of Health , Bethesda, Maryland 20892, United States.

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http://dx.doi.org/10.1021/ct501101fDOI Listing
June 2015

Immunoreactivity to food antigens in patients with chronic urticaria.

Immunol Invest 2014 24;43(5):504-16. Epub 2014 Mar 24.

Institute of Immunology and Allergology, Clinical Center of Serbia , 11000 Belgrade , Serbia .

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http://dx.doi.org/10.3109/08820139.2014.892509DOI Listing
January 2015

Computational and experimental investigation of constitutive behavior in AraC.

Proteins 2014 Dec 21;82(12):3385-96. Epub 2014 Oct 21.

Physics Department, Loyola University Maryland, Baltimore, Maryland.

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http://doi.wiley.com/10.1002/prot.24693
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http://dx.doi.org/10.1002/prot.24693DOI Listing
December 2014

Constant pH Molecular Dynamics in Explicit Solvent with Enveloping Distribution Sampling and Hamiltonian Exchange.

J Chem Theory Comput 2014 Jul 3;10(7):2738-2750. Epub 2014 Jun 3.

Laboratory of Computational Biology, National Heart, Lung, and Blood Institute, National Institutes of Health , Bethesda, Maryland 20892, United States.

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http://dx.doi.org/10.1021/ct500175mDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4095908PMC
July 2014

Gold(III) complexes with esters of cyclohexyl-functionalized ethylenediamine-N,N'-diacetate.

J Inorg Biochem 2013 Nov 13;128:146-53. Epub 2013 Aug 13.

Faculty of Agriculture, University of Belgrade, Nemanjina 6, Belgrade-Zemun, Serbia.

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http://dx.doi.org/10.1016/j.jinorgbio.2013.08.002DOI Listing
November 2013

Good tolerance to goat's milk in patients with recurrent aphthous ulcers with increased immunoreactivity to cow's milk proteins.

J Oral Pathol Med 2013 Aug 25;42(7):523-7. Epub 2013 Feb 25.

Institute of Oncology and Radiology of Serbia, Belgrade, Serbia.

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http://dx.doi.org/10.1111/jop.12052DOI Listing
August 2013

Understanding the basis of a class of paradoxical mutations in AraC through simulations.

Proteins 2013 Mar 24;81(3):490-8. Epub 2012 Dec 24.

Department of Biophysics, Johns Hopkins University, Baltimore, Maryland 21218, USA.

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http://dx.doi.org/10.1002/prot.24207DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3557760PMC
March 2013

Efficient and Unbiased Sampling of Biomolecular Systems in the Canonical Ensemble: A Review of Self-Guided Langevin Dynamics.

Adv Chem Phys 2012 Jan;150:255-326

Laboratory of Computational Biology, National Heart, Lung, and Blood Institute (NHLBI), National Institutes of Health(NIH), 5635 Fishers Lane, Room T900, Bethesda, MD 20892-9314.

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http://dx.doi.org/10.1002/9781118197714.ch6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3731171PMC
January 2012

pH replica-exchange method based on discrete protonation states.

Proteins 2011 Dec 15;79(12):3420-36. Epub 2011 Oct 15.

Research Center for Computational Science, Institute for Molecular Science, Okazaki, Aichi, Japan.

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http://dx.doi.org/10.1002/prot.23176DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3373023PMC
December 2011

Conformational relaxation and water penetration coupled to ionization of internal groups in proteins.

J Phys Chem A 2011 Apr 23;115(16):4042-53. Epub 2011 Mar 23.

Department of Biophysics, Johns Hopkins University, Baltimore, Maryland 21218, United States.

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http://dx.doi.org/10.1021/jp110373fDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3373309PMC
April 2011

Self-guided Langevin dynamics study of regulatory interactions in NtrC.

Proteins 2009 Sep;76(4):1007-19

Department of Biophysics, Johns Hopkins University, Baltimore, Maryland, USA.

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http://dx.doi.org/10.1002/prot.22439DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3373014PMC
September 2009

Open science grid study of the coupling between conformation and water content in the interior of a protein.

J Chem Inf Model 2008 Oct 4;48(10):2021-9. Epub 2008 Oct 4.

Department of Biophysics, Johns Hopkins University, Baltimore, MD, USA.

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http://dx.doi.org/10.1021/ci800263cDOI Listing
October 2008

Theoretical prediction of spectral and optical properties of bacteriochlorophylls in thermally disordered LH2 antenna complexes.

J Chem Phys 2006 Jul;125(1):014903

Department of Physics and Astronomy, University of Missouri, Columbia, Missouri 65211, USA.

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http://dx.doi.org/10.1063/1.2210481DOI Listing
July 2006

Molecular dynamics study of water penetration in staphylococcal nuclease.

Proteins 2005 Aug;60(3):433-49

Johns Hopkins University, Department of Biophysics, Baltimore, Maryland 21218, USA.

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http://dx.doi.org/10.1002/prot.20486DOI Listing
August 2005

Excitation migration in trimeric cyanobacterial photosystem I.

J Chem Phys 2004 Jun;120(23):11183-95

Beckman Institute, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA.

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http://aip.scitation.org/doi/10.1063/1.1739400
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http://dx.doi.org/10.1063/1.1739400DOI Listing
June 2004

Excitons in a photosynthetic light-harvesting system: a combined molecular dynamics, quantum chemistry, and polaron model study.

Phys Rev E Stat Nonlin Soft Matter Phys 2002 Mar 6;65(3 Pt 1):031919. Epub 2002 Mar 6.

Beckman Institute and Department of Physics, University of Illinois, Urbana, Illinois 61801, USA.

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http://dx.doi.org/10.1103/PhysRevE.65.031919DOI Listing
March 2002

The quantum physics of photosynthesis.

Chemphyschem 2002 Mar;3(3):243-8

Department of Biology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA.

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http://dx.doi.org/10.1002/1439-7641(20020315)3:3<243::AID-CPHC243>3.0.CO;2-YDOI Listing
March 2002

Photosynthetic apparatus of purple bacteria.

Q Rev Biophys 2002 Feb;35(1):1-62

Department of Chemistry, University of Toledo, Toledo, OH 43606, USA.

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http://dx.doi.org/10.1017/s0033583501003754DOI Listing
February 2002