Ana Conesa

Ana Conesa

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Ana Conesa

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Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps.

PLoS Comput Biol 2019 Nov 4;15(11):e1006555. Epub 2019 Nov 4.

Developmental and Cell Biology, University of California Irvine, Irvine, California, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1006555DOI Listing
November 2019

A Multiomics Study To Unravel the Effects of Developmental Exposure to Endosulfan in Rats: Molecular Explanation for Sex-Dependent Effects.

ACS Chem Neurosci 2019 Oct 10;10(10):4264-4279. Epub 2019 Sep 10.

Laboratory of Neurobiology , Centro de Investigación Príncipe Felipe , 46012 Valencia , Spain.

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http://dx.doi.org/10.1021/acschemneuro.9b00304DOI Listing
October 2019

Making multi-omics data accessible to researchers.

Sci Data 2019 10 31;6(1):251. Epub 2019 Oct 31.

UCL Cancer institute, University College London, London, UK.

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http://dx.doi.org/10.1038/s41597-019-0258-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6823467PMC
October 2019

A benchmarking of workflows for detecting differential splicing and differential expression at isoform level in human RNA-seq studies.

Brief Bioinform 2019 03;20(2):471-481

National Council of Science and Technology of Argentina.

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http://dx.doi.org/10.1093/bib/bbx122DOI Listing
March 2019

Changes in the uterine metabolome of the cow during the first 7 days after estrus.

Mol Reprod Dev 2019 01 25;86(1):75-87. Epub 2018 Nov 25.

Department of Animal Sciences, University of Florida, Gainesville, Florida.

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http://doi.wiley.com/10.1002/mrd.23082
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http://dx.doi.org/10.1002/mrd.23082DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6322963PMC
January 2019

Tumor microenvironment-targeted poly-L-glutamic acid-based combination conjugate for enhanced triple negative breast cancer treatment.

Biomaterials 2018 12 18;186:8-21. Epub 2018 Sep 18.

Polymer Therapeutics Laboratory, Centro de Investigación Príncipe Felipe, Av. Eduardo Primo Yúfera 3, Valencia, 46012, Spain; Screening Platform, Centro de Investigación Príncipe Felipe, Av. Eduardo Primo Yúfera 3, Valencia, 46012, Spain. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S01429612183066
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http://dx.doi.org/10.1016/j.biomaterials.2018.09.023DOI Listing
December 2018

Transcriptional profiling of the mutualistic bacterium and an mutant under modeled microgravity.

NPJ Microgravity 2018 18;4:25. Epub 2018 Dec 18.

Department of Microbiology and Cell Science University of Florida, Space Life Science Lab, Merritt Island, FL 32953 USA.

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http://www.nature.com/articles/s41526-018-0060-1
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http://dx.doi.org/10.1038/s41526-018-0060-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6299092PMC
December 2018

Growth of Is Enhanced in Cells with Impaired Mitochondrial Function.

Front Cell Infect Microbiol 2017 5;7:499. Epub 2017 Dec 5.

Department of Infectious Diseases and Microbiology, University of Lübeck, Lübeck, Germany.

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http://dx.doi.org/10.3389/fcimb.2017.00499DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5723314PMC
August 2018

Transcriptome analysis reveals novel insights into the response of low-dose benzo(a)pyrene exposure in male tilapia.

Aquat Toxicol 2018 Aug 8;201:162-173. Epub 2018 Jun 8.

CONACYT, Mexico; Departamento de Recursos del Mar, Cinvestav Unidad Mérida, Mérida, Yucatán 97310, Mexico.

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http://dx.doi.org/10.1016/j.aquatox.2018.06.005DOI Listing
August 2018

Event Analysis: Using Transcript Events To Improve Estimates of Abundance in RNA-seq Data.

G3 (Bethesda) 2018 08 30;8(9):2923-2940. Epub 2018 Aug 30.

Department of Molecular Genetics and Microbiology and Genetics Institute, University of Florida, Gainesville, Florida

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http://dx.doi.org/10.1534/g3.118.200373DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6118309PMC
August 2018

Single-cell RNAseq for the study of isoforms-how is that possible?

Genome Biol 2018 08 10;19(1):110. Epub 2018 Aug 10.

Genomics of Gene Expression Laboratory, Centro de Investigación Principe Felipe (CIPF), 46012, Valencia, Spain.

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http://dx.doi.org/10.1186/s13059-018-1496-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6085759PMC
August 2018

Evidence of the Red-Queen Hypothesis from Accelerated Rates of Evolution of Genes Involved in Biotic Interactions in Pneumocystis.

Genome Biol Evol 2018 06;10(6):1596-1606

Fundación para el Fomento de la Investigación Sanitaria y Biomédica de la Comunitat Valenciana (FISABIO)-Salud Pública, València, Spain.

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http://dx.doi.org/10.1093/gbe/evy116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6012782PMC
June 2018

Comparative Metagenomics Provides Insight Into the Ecosystem Functioning of the Shark Bay Stromatolites, Western Australia.

Front Microbiol 2018 25;9:1359. Epub 2018 Jun 25.

Space Life Science Lab, Department of Microbiology and Cell Science, University of Florida, Gainesville, FL, United States.

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http://dx.doi.org/10.3389/fmicb.2018.01359DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6027182PMC
June 2018

GRAM-CNN: a deep learning approach with local context for named entity recognition in biomedical text.

Bioinformatics 2018 05;34(9):1547-1554

Department of Microbiology and Cell Science, Institute for Food and Agricultural Sciences, University of Florida, Gainesville, FL 32611, USA.

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https://academic.oup.com/bioinformatics/article/34/9/1547/47
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http://dx.doi.org/10.1093/bioinformatics/btx815DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5925775PMC
May 2018

The SAGA/TREX-2 subunit Sus1 binds widely to transcribed genes and affects mRNA turnover globally.

Epigenetics Chromatin 2018 03 29;11(1):13. Epub 2018 Mar 29.

Gene Expression and RNA Metabolism Laboratory, Instituto de Biomedicina de Valencia, Consejo Superior de Investigaciones Científicas (CSIC), Jaime Roig 11, 46010, Valencia, Spain.

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http://dx.doi.org/10.1186/s13072-018-0184-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5875001PMC
March 2018

Identification and visualization of differential isoform expression in RNA-seq time series.

Bioinformatics 2018 02;34(3):524-526

Genomics of Gene Expression Laboratory, Centro de Investigación Príncipe Felipe, Valencia 42012, Spain.

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http://dx.doi.org/10.1093/bioinformatics/btx578DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5860359PMC
February 2018

Guidelines for Developing Successful Short Advanced Courses in Systems Medicine and Systems Biology.

Cell Syst 2017 09 23;5(3):168-175. Epub 2017 Aug 23.

Unit of Computational Medicine, Department of Medicine, Karolinska Institutet, 171 77 Stockholm, Sweden; Center for Molecular Medicine, Karolinska Institutet, 171 77 Stockholm, Sweden; Unit of Clinical Epidemiology, Department of Medicine, Karolinska University Hospital, L8, 17176 Stockholm, Sweden; Science for Life Laboratory, 17121 Solna, Sweden; Biological and Environmental Sciences and Engineering Division (BESE), Computer, Electrical and Mathematical Sciences and Engineering Division (CEMSE), King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Kingdom of Saudi Arabia. Electronic address:

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http://dx.doi.org/10.1016/j.cels.2017.05.013DOI Listing
September 2017

The eBioKit, a stand-alone educational platform for bioinformatics.

PLoS Comput Biol 2017 Sep 14;13(9):e1005616. Epub 2017 Sep 14.

SLU-Global Bioinformatics Centre, Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, Uppsala, Sweden.

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http://dx.doi.org/10.1371/journal.pcbi.1005616DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5598936PMC
September 2017

Dynamic Gene Regulatory Networks of Human Myeloid Differentiation.

Cell Syst 2017 04 29;4(4):416-429.e3. Epub 2017 Mar 29.

Developmental and Cell Biology, University of California Irvine, Irvine, CA 92697-2300, USA; Center for Complex Biological Systems, University of California Irvine, Irvine, CA 92697-2300, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cels.2017.03.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5490374PMC
April 2017

Identification of miRNA from Bouteloua gracilis, a drought tolerant grass, by deep sequencing and their in silico analysis.

Comput Biol Chem 2017 Feb 9;66:26-35. Epub 2016 Nov 9.

Facultad de Zootecnia y Ecología, Universidad Autónoma de Chihuahua, Periférico R. Almada Km. 1C.P. 31453, Chihuahua, México. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S14769271163037
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http://dx.doi.org/10.1016/j.compbiolchem.2016.11.001DOI Listing
February 2017

RGmatch: matching genomic regions to proximal genes in omics data integration.

BMC Bioinformatics 2016 Nov 22;17(Suppl 15):427. Epub 2016 Nov 22.

Genomics of Gene Expression Laboratory, Gene Expression and Epigenomics Program, Centro de Investigación Príncipe Felipe, Eduardo Primo Yúfera 3, 46012, Valencia, Spain.

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http://dx.doi.org/10.1186/s12859-016-1293-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5133492PMC
November 2016

Transcriptome modulation during host shift is driven by secondary metabolites in desert Drosophila.

Mol Ecol 2016 09 6;25(18):4534-50. Epub 2016 Sep 6.

IEGEBA-CONICET, UNiversidad de Buenos Aires, FAcultad de Ciencias Exactas y Naturales, Intendente Güiraldes 2160, Ciudad Universitaria (C1428 EHA), CABA, Argentina.

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http://dx.doi.org/10.1111/mec.13785DOI Listing
September 2016

Erratum to: A survey of best practices for RNA-seq data analysis.

Genome Biol 2016 Aug 26;17(1):181. Epub 2016 Aug 26.

Department of Developmental and Cell Biology, University of California, Irvine, Irvine, CA, 92697-2300, USA.

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http://dx.doi.org/10.1186/s13059-016-1047-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5000515PMC
August 2016

spongeScan: A web for detecting microRNA binding elements in lncRNA sequences.

Nucleic Acids Res 2016 07 19;44(W1):W176-80. Epub 2016 May 19.

Genomics of Gene Expression Lab, Centro de Investigación Príncipe Felipe (CIPF), 46012 Valencia, Spain Microbiology and Cell Science, IFAS, University of Florida, Gainesville, USA

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http://dx.doi.org/10.1093/nar/gkw443DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987953PMC
July 2016

Separating common from distinctive variation.

BMC Bioinformatics 2016 Jun 6;17 Suppl 5:195. Epub 2016 Jun 6.

Biosystems Data Analysis, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, 1098, XH, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1186/s12859-016-1037-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4905617PMC
June 2016

[Ileocolic fistulas after radiotherapy for endometrial carcinoma].

Gastroenterol Hepatol 2016 Jan 18;39(1):23-4. Epub 2015 Feb 18.

Servicio de Aparato Digestivo, Hospital Clínico Universitario, Valladolid.

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http://dx.doi.org/10.1016/j.gastrohep.2014.12.009DOI Listing
January 2016

Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data.

Bioinformatics 2016 Jan 1;32(2):292-4. Epub 2015 Oct 1.

Department of Molecular Biology, Max Planck Institute for Infection Biology, D-10117, Berlin, Germany.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btv566DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4708105PMC
January 2016

Data quality aware analysis of differential expression in RNA-seq with NOISeq R/Bioc package.

Nucleic Acids Res 2015 Dec 16;43(21):e140. Epub 2015 Jul 16.

Genomics of Gene Expression Lab, Centro de Investigación Príncipe Felipe, Eduardo Primo Yúfera 3, 46012, Valencia, Spain Microbiology and Cell Science Department, Institute for Food and Agricultural Sciences, University of Florida, Gainesville, FL 32603, USA

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkv711DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4666377PMC
December 2015

Comparative RNA-seq analysis of the Tritrichomonas foetus PIG30/1 isolate from pigs reveals close association with Tritrichomonas foetus BP-4 isolate 'bovine genotype'.

Vet Parasitol 2015 Sep 14;212(3-4):111-7. Epub 2015 Aug 14.

Faculty of Veterinary Science, McMaster Building B14, University of Sydney, New South Wales 2006, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.vetpar.2015.08.012DOI Listing
September 2015

Methylome profiling reveals functions and genes which are differentially methylated in serrated compared to conventional colorectal carcinoma.

Clin Epigenetics 2015 17;7:101. Epub 2015 Sep 17.

Department of Bioinformatics and Genomics, Centro de Investigación Príncipe Felipe (CIPF), Yúfera, 3, 46012 Valencia, Spain ; Microbiology and Cell Science, Institute of Food and Agricultural Science, University of Florida, Gainesville, USA.

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http://www.clinicalepigeneticsjournal.com/content/7/1/101
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http://dx.doi.org/10.1186/s13148-015-0128-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4574063PMC
September 2015

RNAseq analysis of Aspergillus fumigatus in blood reveals a just wait and see resting stage behavior.

BMC Genomics 2015 Aug 27;16:640. Epub 2015 Aug 27.

Institut für Mikrobiologie und Genetik, Georg-August-Universität Göttingen, Grisebachstraße 8, D-37077, Göttingen, Germany.

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http://www.biomedcentral.com/1471-2164/16/640
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http://dx.doi.org/10.1186/s12864-015-1853-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4551469PMC
August 2015

The common ground of genomics and systems biology.

BMC Syst Biol 2014 13;8 Suppl 2:S1. Epub 2014 Mar 13.

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http://dx.doi.org/10.1186/1752-0509-8-S2-S1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4101703PMC
March 2015

Two independent epigenetic biomarkers predict survival in neuroblastoma.

Clin Epigenetics 2015 27;7:16. Epub 2015 Feb 27.

Pediatric Oncology Unit, Hospital Universitari i Politècnic La Fe, Avda Fernando Abril Martorell, Valencia, 46026 Spain.

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http://dx.doi.org/10.1186/s13148-015-0054-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4357365PMC
March 2015

Understanding disease mechanisms with models of signaling pathway activities.

BMC Syst Biol 2014 Oct 25;8:121. Epub 2014 Oct 25.

Department of Computational Genomics, Centro de Investigación Príncipe Felipe (CIPF), Avda. Autopista del Saler, 16, 46012, Valencia, Spain.

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http://dx.doi.org/10.1186/s12918-014-0121-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4213475PMC
October 2014

Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series.

Bioinformatics 2014 Sep 3;30(18):2598-602. Epub 2014 Jun 3.

Statistics and Operational Research Department, University of Alicante, 03690, Alicante, Spain, Genomics of Gene Expression Laboratory, Prince Felipe Research Centre, 46012 Valencia, Spain and Applied Statistics, Operational Research and Quality Department, Polytechnic University of Valencia, 46020 Valencia, Spain.

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http://bioinformatics.oxfordjournals.org/content/30/18/2598.
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http://bioinformatics.oxfordjournals.org/cgi/doi/10.1093/bio
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http://dx.doi.org/10.1093/bioinformatics/btu333DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4155246PMC
September 2014

Sequencing and functional analysis of the genome of a nematode egg-parasitic fungus, Pochonia chlamydosporia.

Fungal Genet Biol 2014 Apr 13;65:69-80. Epub 2014 Feb 13.

Department of Marine Sciences and Applied Biology, University of Alicante, P.O. Box. 99, E-03080 Alicante, Spain; Multidisciplinary Institute for Environmental Studies (MIES) "Ramón Margalef", University of Alicante, Alicante, Spain. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S10871845140001
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http://dx.doi.org/10.1016/j.fgb.2014.02.002DOI Listing
April 2014

Microarray analysis of Etrog citron (Citrus medica L.) reveals changes in chloroplast, cell wall, peroxidase and symporter activities in response to viroid infection.

Mol Plant Pathol 2012 Oct 15;13(8):852-64. Epub 2012 Mar 15.

Department of Phytosanitary Sciences and Technologies-University of Catania, Via S. Sofia 102, 95123 Catania, Italy.

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http://dx.doi.org/10.1111/j.1364-3703.2012.00794.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6638686PMC
October 2012

Qualimap: evaluating next-generation sequencing alignment data.

Bioinformatics 2012 Oct 22;28(20):2678-9. Epub 2012 Aug 22.

Bioinformatics and Genomics Department, Centro de Investigación Príncipe Felipe, Valencia, Spain.

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http://dx.doi.org/10.1093/bioinformatics/bts503DOI Listing
October 2012

ARSyN: a method for the identification and removal of systematic noise in multifactorial time course microarray experiments.

Biostatistics 2012 Jul 14;13(3):553-66. Epub 2011 Nov 14.

Departamento de Estadística e Investigación Operativa, Universidad de Alicante, Apartado 03080, Alicante, Spain.

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https://academic.oup.com/biostatistics/article-lookup/doi/10
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http://dx.doi.org/10.1093/biostatistics/kxr042DOI Listing
July 2012

Mining of miRNAs and potential targets from gene oriented clusters of transcripts sequences of the anti-malarial plant, Artemisia annua.

Biotechnol Lett 2012 Apr 9;34(4):737-45. Epub 2011 Dec 9.

Departamento de Biología, Universidad Nacional de Colombia, Bogotá, Bogota, DC, Colombia.

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http://dx.doi.org/10.1007/s10529-011-0808-0DOI Listing
April 2012

Histone modifications and expression of DAM6 gene in peach are modulated during bud dormancy release in a cultivar-dependent manner.

New Phytol 2012 Jan 7;193(1):67-80. Epub 2011 Sep 7.

Instituto Valenciano de Investigaciones Agrarias (IVIA), carretera Moncada-Náquera km 4.5, ES-46113 Moncada, Valencia, Spain.

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http://doi.wiley.com/10.1111/j.1469-8137.2011.03863.x
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http://dx.doi.org/10.1111/j.1469-8137.2011.03863.xDOI Listing
January 2012

Differential expression in RNA-seq: a matter of depth.

Genome Res 2011 Dec 8;21(12):2213-23. Epub 2011 Sep 8.

Bioinformatics and Genomics Department, Centro de Investigación Príncipe Felipe, 46012 Valencia, Spain.

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http://dx.doi.org/10.1101/gr.124321.111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3227109PMC
December 2011

Fortunella margarita transcriptional reprogramming triggered by Xanthomonas citri subsp. citri.

BMC Plant Biol 2011 Nov 11;11:159. Epub 2011 Nov 11.

Plant Molecular and Cellular Biology Program (PMCB), Horticultural Sciences Department, University of Florida, Gainesville, FL 32611, USA.

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http://bmcplantbiol.biomedcentral.com/articles/10.1186/1471-
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http://dx.doi.org/10.1186/1471-2229-11-159DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3235979PMC
November 2011

B2G-FAR, a species-centered GO annotation repository.

Bioinformatics 2011 Apr 18;27(7):919-24. Epub 2011 Feb 18.

Bioinformatics and Genomics Department, Centro de Investigaciones Príncipe Felipe (CIPF), Valencia, Spain.

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http://dx.doi.org/10.1093/bioinformatics/btr059DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3065692PMC
April 2011

Modeling human endometrial decidualization from the interaction between proteome and secretome.

J Clin Endocrinol Metab 2011 Mar 29;96(3):706-16. Epub 2010 Dec 29.

Fundación IVI-Instituto Universitario IVI-Universidad de Valencia, INCLIVA Valencia 46015, Spain.

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http://dx.doi.org/10.1210/jc.2010-1825DOI Listing
March 2011

Blast2GO: A comprehensive suite for functional analysis in plant genomics.

Int J Plant Genomics 2008 ;2008:619832

Bioinformatics Department, Centro de Investigación Príncipe Felipe, Valencia, Spain.

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https://www.hindawi.com/archive/2008/619832/
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http://dx.doi.org/10.1155/2008/619832DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2375974PMC
July 2010

Serial Expression Analysis: a web tool for the analysis of serial gene expression data.

Nucleic Acids Res 2010 Jul 4;38(Web Server issue):W239-45. Epub 2010 Jun 4.

Statistics and Operation Research Department, University of Alicante, Spain.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkq488DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896172PMC
July 2010

SIMAP--a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters.

Nucleic Acids Res 2010 Jan 11;38(Database issue):D223-6. Epub 2009 Nov 11.

Department of Genome Oriented Bioinformatics, Technische Universität München, Wissenschaftszentrum Weihenstephan, Freising, Germany.

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http://dx.doi.org/10.1093/nar/gkp949DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808863PMC
January 2010

Parallel changes in gene expression in peripheral blood mononuclear cells and the brain after maternal separation in the mouse.

BMC Res Notes 2009 Sep 25;2:195. Epub 2009 Sep 25.

Department of Molecular and Cell Biology, University of Cape Town, Rondebosch, 7701, South Africa.

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http://dx.doi.org/10.1186/1756-0500-2-195DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2759952PMC
September 2009

Functional assessment of time course microarray data.

BMC Bioinformatics 2009 Jun 16;10 Suppl 6:S9. Epub 2009 Jun 16.

Department of Statistics and Operation Research, University of Alicante, Ctra, San Vicente del Raspeig, S/N 03690 Alicante, Spain.

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http://dx.doi.org/10.1186/1471-2105-10-S6-S9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2697656PMC
June 2009

Direct functional assessment of the composite phenotype through multivariate projection strategies.

Genomics 2008 Dec 13;92(6):373-83. Epub 2008 Sep 13.

Bioinformatics Department, Centro de Investigación Principe Felipe, Valencia, Spain.

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http://dx.doi.org/10.1016/j.ygeno.2008.05.015DOI Listing
December 2008

Transcriptional profiling of mRNA expression in the mouse distal colon.

Gastroenterology 2008 Dec 3;135(6):2019-29. Epub 2008 Sep 3.

Division of Gastroenterology, Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan 48105, USA.

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http://dx.doi.org/10.1053/j.gastro.2008.08.048DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2748881PMC
December 2008

Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments.

Nucleic Acids Res 2008 Jul 31;36(Web Server issue):W341-6. Epub 2008 May 31.

Department of Bioinformatics, Centro de Investigación Príncipe Felipe (CIPF), Autopista del Saler 16, E46013 Valencia, Spain.

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http://dx.doi.org/10.1093/nar/gkn318DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447758PMC
July 2008

Large-scale Gene Ontology analysis of plant transcriptome-derived sequences retrieved by AFLP technology.

BMC Genomics 2008 Jul 24;9:347. Epub 2008 Jul 24.

Department of Environmental Agronomy and Crop Science, University of Padova, Viale dell'Università 16, Campus of Agripolis, 35020 Legnaro, Italy.

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http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2164-9-347DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2515857PMC
July 2008

High-throughput functional annotation and data mining with the Blast2GO suite.

Nucleic Acids Res 2008 Jun 29;36(10):3420-35. Epub 2008 Apr 29.

Bioinformatics Department, Centro de Investigación Principe Felipe, Valencia, Spain.

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http://dx.doi.org/10.1093/nar/gkn176DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2425479PMC
June 2008

Spatial differentiation in the vegetative mycelium of Aspergillus niger.

Eukaryot Cell 2007 Dec 19;6(12):2311-22. Epub 2007 Oct 19.

Microbiology, Institute of Biomembranes, Utrecht University, Padulaan 8, 3584 CH Utrecht, The Netherlands.

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http://dx.doi.org/10.1128/EC.00244-07DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2168252PMC
December 2007

Transcriptional response of Citrus aurantifolia to infection by Citrus tristeza virus.

Virology 2007 Oct 9;367(2):298-306. Epub 2007 Jul 9.

Instituto Valenciano de Investigaciones Agrarias, Ctra. Moncada-Náquera Km 4.5, Moncada, 46113, Valencia, Spain.

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http://dx.doi.org/10.1016/j.virol.2007.05.025DOI Listing
October 2007

Discovering gene expression patterns in time course microarray experiments by ANOVA-SCA.

Bioinformatics 2007 Jul 22;23(14):1792-800. Epub 2007 May 22.

Departamento de Estadística e Investigación Operativa, Universidad de Alicante, Apartado 03080, Alicante, Spain.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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July 2007