Ana Conesa

Ana Conesa

UNVERIFIED PROFILE

Are you Ana Conesa?   Register this Author

Register author
Ana Conesa

Ana Conesa

Publications by authors named "Ana Conesa"

Are you Ana Conesa?   Register this Author

100Publications

2379Reads

6Profile Views

Mip6 binds directly to the Mex67 UBA domain to maintain low levels of Msn2/4 stress-dependent mRNAs.

Authors:
Manuel Martín-Expósito Maria-Eugenia Gas Nada Mohamad Carme Nuño-Cabanes Ana Tejada-Colón Pau Pascual-García Lorena de la Fuente Belén Chaves-Arquero Jonathan Merran Jeffry Corden Ana Conesa José Manuel Pérez-Cañadillas Jerónimo Bravo Susana Rodríguez-Navarro

EMBO Rep 2019 Dec 3;20(12):e47964. Epub 2019 Nov 3.

Gene Expression and RNA Metabolism Laboratory, Instituto de Biomedicina de Valencia (CSIC), Valencia, Spain.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.15252/embr.201947964DOI Listing
December 2019

Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps.

Authors:
Camden Jansen Ricardo N Ramirez Nicole C El-Ali David Gomez-Cabrero Jesper Tegner Matthias Merkenschlager Ana Conesa Ali Mortazavi

PLoS Comput Biol 2019 Nov 4;15(11):e1006555. Epub 2019 Nov 4.

Developmental and Cell Biology, University of California Irvine, Irvine, California, United States of America.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1371/journal.pcbi.1006555DOI Listing
November 2019

Differences in gene expression profiling and biomarkers between histological colorectal carcinoma subsets from the serrated pathway.

Authors:
José García-Solano María Del Carmen Turpin-Sevilla Francisco García-García Rosa Carbonell-Muñoz Daniel Torres-Moreno Ana Conesa Pablo Conesa-Zamora

Histopathology 2019 Oct 2;75(4):496-507. Epub 2019 Aug 2.

Facultad de Ciencias de la Salud, Catholic University of Murcia, Murcia, Spain.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1111/his.13889DOI Listing
October 2019

A Multiomics Study To Unravel the Effects of Developmental Exposure to Endosulfan in Rats: Molecular Explanation for Sex-Dependent Effects.

Authors:
Sonia Tarazona Elena Bernabeu Héctor Carmona Belén Gómez-Giménez Javier García-Planells Pim E G Leonards Stephan Jung Ana Conesa Vicente Felipo Marta Llansola

ACS Chem Neurosci 2019 Oct 10;10(10):4264-4279. Epub 2019 Sep 10.

Laboratory of Neurobiology , Centro de Investigación Príncipe Felipe , 46012 Valencia , Spain.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1021/acschemneuro.9b00304DOI Listing
October 2019

Making multi-omics data accessible to researchers.

Authors:
Ana Conesa Stephan Beck

Sci Data 2019 10 31;6(1):251. Epub 2019 Oct 31.

UCL Cancer institute, University College London, London, UK.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1038/s41597-019-0258-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6823467PMC
October 2019

STATegra, a comprehensive multi-omics dataset of B-cell differentiation in mouse.

Authors:
David Gomez-Cabrero Sonia Tarazona Isabel Ferreirós-Vidal Ricardo N Ramirez Carlos Company Andreas Schmidt Theo Reijmers Veronica von Saint Paul Francesco Marabita Javier Rodríguez-Ubreva Antonio Garcia-Gomez Thomas Carroll Lee Cooper Ziwei Liang Gopuraja Dharmalingam Frans van der Kloet Amy C Harms Leandro Balzano-Nogueira Vincenzo Lagani Ioannis Tsamardinos Michael Lappe Dieter Maier Johan A Westerhuis Thomas Hankemeier Axel Imhof Esteban Ballestar Ali Mortazavi Matthias Merkenschlager Jesper Tegner Ana Conesa

Sci Data 2019 10 31;6(1):256. Epub 2019 Oct 31.

Microbiology and Cell Science Department, Institute for Food and Agricultural Research, Genetics Institute, University of Florida, Gainesville, Florida, USA.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1038/s41597-019-0202-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6823427PMC
October 2019

Feedforward regulation of Myc coordinates lineage-specific with housekeeping gene expression during B cell progenitor cell differentiation.

Authors:
Isabel Ferreirós-Vidal Thomas Carroll Tianyi Zhang Vincenzo Lagani Ricardo N Ramirez Elizabeth Ing-Simmons Alicia G Gómez-Valadés Lee Cooper Ziwei Liang Georgios Papoutsoglou Gopuraja Dharmalingam Ya Guo Sonia Tarazona Sunjay J Fernandes Peri Noori Gilad Silberberg Amanda G Fisher Ioannis Tsamardinos Ali Mortazavi Boris Lenhard Ana Conesa Jesper Tegner Matthias Merkenschlager David Gomez-Cabrero

PLoS Biol 2019 04 12;17(4):e2006506. Epub 2019 Apr 12.

Unit of Computational Medicine, Department of Medicine, Solna, Center for Molecular Medicine, Karolinska Institutet, Stockholm, Sweden.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1371/journal.pbio.2006506DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6481923PMC
April 2019

A benchmarking of workflows for detecting differential splicing and differential expression at isoform level in human RNA-seq studies.

Authors:
Gabriela A Merino Ana Conesa Elmer A Fernández

Brief Bioinform 2019 03;20(2):471-481

National Council of Science and Technology of Argentina.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1093/bib/bbx122DOI Listing
March 2019

Changes in the uterine metabolome of the cow during the first 7 days after estrus.

Authors:
Paula Tríbulo Leandro Balzano-Nogueira Ana Conesa Luiz G Siqueira Peter J Hansen

Mol Reprod Dev 2019 01 25;86(1):75-87. Epub 2018 Nov 25.

Department of Animal Sciences, University of Florida, Gainesville, Florida.

View Article

Download full-text PDF

 Source
http://doi.wiley.com/10.1002/mrd.23082
Publisher Site
http://dx.doi.org/10.1002/mrd.23082DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6322963PMC
January 2019

Tumor microenvironment-targeted poly-L-glutamic acid-based combination conjugate for enhanced triple negative breast cancer treatment.

Authors:
Juan J Arroyo-Crespo Ana Armiñán David Charbonnier Leandro Balzano-Nogueira Francisco Huertas-López Cristina Martí Sonia Tarazona Jerónimo Forteza Ana Conesa María J Vicent

Biomaterials 2018 12 18;186:8-21. Epub 2018 Sep 18.

Polymer Therapeutics Laboratory, Centro de Investigación Príncipe Felipe, Av. Eduardo Primo Yúfera 3, Valencia, 46012, Spain; Screening Platform, Centro de Investigación Príncipe Felipe, Av. Eduardo Primo Yúfera 3, Valencia, 46012, Spain. Electronic address:

View Article

Download full-text PDF

 Source
https://linkinghub.elsevier.com/retrieve/pii/S01429612183066
Publisher Site
http://dx.doi.org/10.1016/j.biomaterials.2018.09.023DOI Listing
December 2018

Transcriptional profiling of the mutualistic bacterium and an mutant under modeled microgravity.

Authors:
Alexandrea A Duscher Ana Conesa Mary Bishop Madeline M Vroom Sergio D Zubizarreta Jamie S Foster

NPJ Microgravity 2018 18;4:25. Epub 2018 Dec 18.

Department of Microbiology and Cell Science University of Florida, Space Life Science Lab, Merritt Island, FL 32953 USA.

View Article

Download full-text PDF

 Source
http://www.nature.com/articles/s41526-018-0060-1
Publisher Site
http://dx.doi.org/10.1038/s41526-018-0060-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6299092PMC
December 2018

Overexpression of the vascular brassinosteroid receptor BRL3 confers drought resistance without penalizing plant growth.

Authors:
Norma Fàbregas Fidel Lozano-Elena David Blasco-Escámez Takayuki Tohge Cristina Martínez-Andújar Alfonso Albacete Sonia Osorio Mariana Bustamante José Luis Riechmann Takahito Nomura Takao Yokota Ana Conesa Francisco Pérez Alfocea Alisdair R Fernie Ana I Caño-Delgado

Nat Commun 2018 11 8;9(1):4680. Epub 2018 Nov 8.

Centre for Research in Agricultural Genomics (CRAG) CSIC-IRTA-UAB-UB, 08193, Barcelona, Spain.

View Article

Download full-text PDF

 Source
http://www.nature.com/articles/s41467-018-06861-3
Publisher Site
http://dx.doi.org/10.1038/s41467-018-06861-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6224425PMC
November 2018

Two histologically colorectal carcinomas subsets from the serrated pathway show different methylome signatures and diagnostic biomarkers.

Authors:
José García-Solano María C Turpin Daniel Torres-Moreno Francisco Huertas-López Anne Tuomisto Markus J Mäkinen Ana Conesa Pablo Conesa-Zamora

Clin Epigenetics 2018 11 9;10(1):141. Epub 2018 Nov 9.

Facultad de Ciencias de la Salud, Catholic University of Murcia (UCAM), Murcia, Spain.

View Article

Download full-text PDF

 Source
https://clinicalepigeneticsjournal.biomedcentral.com/article
Publisher Site
http://dx.doi.org/10.1186/s13148-018-0571-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6230233PMC
November 2018

Elucidating the Role of Chromatin State and Transcription Factors on the Regulation of the Yeast Metabolic Cycle: A Multi-Omic Integrative Approach.

Authors:
Víctor Sánchez-Gaya Salvador Casaní-Galdón Manuel Ugidos Zheng Kuang Jane Mellor Ana Conesa Sonia Tarazona

Front Genet 2018 30;9:578. Epub 2018 Nov 30.

Genomics of Gene Expression Laboratory Centro de Investigación Príncipe Felipe, Valencia, Spain.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.3389/fgene.2018.00578DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6284056PMC
November 2018

Gene expression profile and molecular pathway datasets resulting from benzo(a)pyrene exposure in the liver and testis of adult tilapia.

Authors:
Reyna Cristina Colli-Dula Xiefan Fang David Moraga-Amador Nacira Albornoz-Abud Roberto Zamora-Bustillos Ana Conesa Omar Zapata-Perez Diego Moreno Emanuel Hernandez-Nuñez

Data Brief 2018 Oct 5;20:1500-1509. Epub 2018 Sep 5.

CONACYT, Mexico.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1016/j.dib.2018.08.206DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6153355PMC
October 2018

Short and long-term effectiveness and safety of vedolizumab in inflammatory bowel disease: results from the ENEIDA registry.

Authors:
María Chaparro Ana Garre Elena Ricart Marisa Iborra Francisco Mesonero Isabel Vera Sabino Riestra Valle García-Sánchez M Luisa De Castro Albert Martin-Cardona Xavier Aldeguer Miguel Mínguez Manuel Barreiro de-Acosta Montserrat Rivero Fernando Muñoz Montserrat Andreu Ana Bargalló Carlos González-Muñoza Jose L Pérez Calle Mariana Fe García-Sepulcre Fernando Bermejo Jose Maria Huguet José L Cabriada Ana Gutiérrez Míriam Mañosa Albert Villoria Ana Y Carbajo Rufo Lorente Santiago García-López Marta Piqueras Esther Hinojosa Clàudia Arajol Beatriz Sicilia Ana Macho Conesa Empar Sainz Pedro Almela Jordina Llaó Oscar Roncero Patricia Camo Carlos Taxonera Manuel Van Domselaar Ramón Pajares Jesús Legido Rosa Madrigal Alfredo J Lucendo Guillermo Alcaín Eugeni Doménech Javier P Gisbert

Aliment Pharmacol Ther 2018 10;48(8):839-851

Madrid, Spain.

View Article

Download full-text PDF

 Source
http://doi.wiley.com/10.1111/apt.14930
Publisher Site
http://dx.doi.org/10.1111/apt.14930DOI Listing
October 2018

Growth of Is Enhanced in Cells with Impaired Mitochondrial Function.

Authors:
Nadja Käding Inga Kaufhold Constanze Müller Marta Szaszák Kensuke Shima Thomas Weinmaier Rodrigo Lomas Ana Conesa Philippe Schmitt-Kopplin Thomas Rattei Jan Rupp

Front Cell Infect Microbiol 2017 5;7:499. Epub 2017 Dec 5.

Department of Infectious Diseases and Microbiology, University of Lübeck, Lübeck, Germany.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.3389/fcimb.2017.00499DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5723314PMC
August 2018

Transcriptome analysis reveals novel insights into the response of low-dose benzo(a)pyrene exposure in male tilapia.

Authors:
Reyna Cristina Colli-Dula Xiefan Fang David Moraga-Amador Nacira Albornoz-Abud Roberto Zamora-Bustillos Ana Conesa Omar Zapata-Perez Diego Moreno Emanuel Hernandez-Nuñez

Aquat Toxicol 2018 Aug 8;201:162-173. Epub 2018 Jun 8.

CONACYT, Mexico; Departamento de Recursos del Mar, Cinvestav Unidad Mérida, Mérida, Yucatán 97310, Mexico.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1016/j.aquatox.2018.06.005DOI Listing
August 2018

Event Analysis: Using Transcript Events To Improve Estimates of Abundance in RNA-seq Data.

Authors:
Jeremy R B Newman Patrick Concannon Manuel Tardaguila Ana Conesa Lauren M McIntyre

G3 (Bethesda) 2018 08 30;8(9):2923-2940. Epub 2018 Aug 30.

Department of Molecular Genetics and Microbiology and Genetics Institute, University of Florida, Gainesville, Florida

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1534/g3.118.200373DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6118309PMC
August 2018

Single-cell RNAseq for the study of isoforms-how is that possible?

Authors:
Ángeles Arzalluz-Luque Ana Conesa

Genome Biol 2018 08 10;19(1):110. Epub 2018 Aug 10.

Genomics of Gene Expression Laboratory, Centro de Investigación Principe Felipe (CIPF), 46012, Valencia, Spain.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1186/s13059-018-1496-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6085759PMC
August 2018

PaintOmics 3: a web resource for the pathway analysis and visualization of multi-omics data.

Authors:
Rafael Hernández-de-Diego Sonia Tarazona Carlos Martínez-Mira Leandro Balzano-Nogueira Pedro Furió-Tarí Georgios J Pappas Ana Conesa

Nucleic Acids Res 2018 07;46(W1):W503-W509

Genomics of Gene Expression Lab, Centro de Investigación Príncipe Felipe, Valencia, Spain.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1093/nar/gky466DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6030972PMC
July 2018

Corrigendum: SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification.

Authors:
Manuel Tardaguila Lorena de la Fuente Cristina Marti Cécile Pereira Francisco Jose Pardo-Palacios Hector Del Risco Marc Ferrell Maravillas Mellado Marissa Macchietto Kenneth Verheggen Mariola Edelmann Iakes Ezkurdia Jesus Vazquez Michael Tress Ali Mortazavi Lennart Martens Susana Rodriguez-Navarro Victoria Moreno-Manzano Ana Conesa

Genome Res 2018 07;28(7):1096

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1101/gr.239137.118DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6028133PMC
July 2018

Evidence of the Red-Queen Hypothesis from Accelerated Rates of Evolution of Genes Involved in Biotic Interactions in Pneumocystis.

Authors:
Luis Delaye Susana Ruiz-Ruiz Enrique Calderon Sonia Tarazona Ana Conesa Andrés Moya

Genome Biol Evol 2018 06;10(6):1596-1606

Fundación para el Fomento de la Investigación Sanitaria y Biomédica de la Comunitat Valenciana (FISABIO)-Salud Pública, València, Spain.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1093/gbe/evy116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6012782PMC
June 2018

Comparative Metagenomics Provides Insight Into the Ecosystem Functioning of the Shark Bay Stromatolites, Western Australia.

Authors:
Joany Babilonia Ana Conesa Giorgio Casaburi Cecile Pereira Artemis S Louyakis R Pamela Reid Jamie S Foster

Front Microbiol 2018 25;9:1359. Epub 2018 Jun 25.

Space Life Science Lab, Department of Microbiology and Cell Science, University of Florida, Gainesville, FL, United States.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.3389/fmicb.2018.01359DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6027182PMC
June 2018

GRAM-CNN: a deep learning approach with local context for named entity recognition in biomedical text.

Authors:
Qile Zhu Xiaolin Li Ana Conesa Cécile Pereira

Bioinformatics 2018 05;34(9):1547-1554

Department of Microbiology and Cell Science, Institute for Food and Agricultural Sciences, University of Florida, Gainesville, FL 32611, USA.

View Article

Download full-text PDF

 Source
https://academic.oup.com/bioinformatics/article/34/9/1547/47
Publisher Site
http://dx.doi.org/10.1093/bioinformatics/btx815DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5925775PMC
May 2018

The SAGA/TREX-2 subunit Sus1 binds widely to transcribed genes and affects mRNA turnover globally.

Authors:
Varinia García-Molinero José García-Martínez Rohit Reja Pedro Furió-Tarí Oreto Antúnez Vinesh Vinayachandran Ana Conesa B Franklin Pugh José E Pérez-Ortín Susana Rodríguez-Navarro

Epigenetics Chromatin 2018 03 29;11(1):13. Epub 2018 Mar 29.

Gene Expression and RNA Metabolism Laboratory, Instituto de Biomedicina de Valencia, Consejo Superior de Investigaciones Científicas (CSIC), Jaime Roig 11, 46010, Valencia, Spain.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1186/s13072-018-0184-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5875001PMC
March 2018

Identification and visualization of differential isoform expression in RNA-seq time series.

Authors:
María José Nueda Jordi Martorell-Marugan Cristina Martí Sonia Tarazona Ana Conesa

Bioinformatics 2018 02;34(3):524-526

Genomics of Gene Expression Laboratory, Centro de Investigación Príncipe Felipe, Valencia 42012, Spain.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1093/bioinformatics/btx578DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5860359PMC
February 2018

SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification.

Authors:
Manuel Tardaguila Lorena de la Fuente Cristina Marti Cécile Pereira Francisco Jose Pardo-Palacios Hector Del Risco Marc Ferrell Maravillas Mellado Marissa Macchietto Kenneth Verheggen Mariola Edelmann Iakes Ezkurdia Jesus Vazquez Michael Tress Ali Mortazavi Lennart Martens Susana Rodriguez-Navarro Victoria Moreno-Manzano Ana Conesa

Genome Res 2018 Feb 9. Epub 2018 Feb 9.

Department of Microbiology and Cell Science, Institute for Food and Agricultural Sciences, Genetics Institute, University of Florida, Gainesville, Florida 32611, USA.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1101/gr.222976.117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5848618PMC
February 2018

Guidelines for Developing Successful Short Advanced Courses in Systems Medicine and Systems Biology.

Authors:
David Gomez-Cabrero Francesco Marabita Sonia Tarazona Isaac Cano Josep Roca Ana Conesa Philippe Sabatier Jesper Tegnér

Cell Syst 2017 12;5(6):654

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1016/j.cels.2017.12.010DOI Listing
December 2017

Disease-specific biases in alternative splicing and tissue-specific dysregulation revealed by multitissue profiling of lymphocyte gene expression in type 1 diabetes.

Authors:
Jeremy R B Newman Ana Conesa Matthew Mika Felicia N New Suna Onengut-Gumuscu Mark A Atkinson Stephen S Rich Lauren M McIntyre Patrick Concannon

Genome Res 2017 11 12;27(11):1807-1815. Epub 2017 Oct 12.

Genetics Institute, University of Florida, Gainesville, Florida 32610, USA.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1101/gr.217984.116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5668939PMC
November 2017

Guidelines for Developing Successful Short Advanced Courses in Systems Medicine and Systems Biology.

Authors:
David Gomez-Cabrero Francesco Marabita Sonia Tarazona Isaac Cano Josep Roca Ana Conesa Philippe Sabatier Jesper Tegnér

Cell Syst 2017 09 23;5(3):168-175. Epub 2017 Aug 23.

Unit of Computational Medicine, Department of Medicine, Karolinska Institutet, 171 77 Stockholm, Sweden; Center for Molecular Medicine, Karolinska Institutet, 171 77 Stockholm, Sweden; Unit of Clinical Epidemiology, Department of Medicine, Karolinska University Hospital, L8, 17176 Stockholm, Sweden; Science for Life Laboratory, 17121 Solna, Sweden; Biological and Environmental Sciences and Engineering Division (BESE), Computer, Electrical and Mathematical Sciences and Engineering Division (CEMSE), King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Kingdom of Saudi Arabia. Electronic address:

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1016/j.cels.2017.05.013DOI Listing
September 2017

The eBioKit, a stand-alone educational platform for bioinformatics.

Authors:
Rafael Hernández-de-Diego Etienne P de Villiers Tomas Klingström Hadrien Gourlé Ana Conesa Erik Bongcam-Rudloff

PLoS Comput Biol 2017 Sep 14;13(9):e1005616. Epub 2017 Sep 14.

SLU-Global Bioinformatics Centre, Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, Uppsala, Sweden.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1371/journal.pcbi.1005616DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5598936PMC
September 2017

Dynamic Gene Regulatory Networks of Human Myeloid Differentiation.

Authors:
Ricardo N Ramirez Nicole C El-Ali Mikayla Anne Mager Dana Wyman Ana Conesa Ali Mortazavi

Cell Syst 2017 04 29;4(4):416-429.e3. Epub 2017 Mar 29.

Developmental and Cell Biology, University of California Irvine, Irvine, CA 92697-2300, USA; Center for Complex Biological Systems, University of California Irvine, Irvine, CA 92697-2300, USA. Electronic address:

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1016/j.cels.2017.03.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5490374PMC
April 2017

Identification of miRNA from Bouteloua gracilis, a drought tolerant grass, by deep sequencing and their in silico analysis.

Authors:
Perla Lucía Ordóñez-Baquera Everardo González-Rodríguez Gerardo Armando Aguado-Santacruz Quintín Rascón-Cruz Ana Conesa Verónica Moreno-Brito Raquel Echavarria Joel Dominguez-Viveros

Comput Biol Chem 2017 Feb 9;66:26-35. Epub 2016 Nov 9.

Facultad de Zootecnia y Ecología, Universidad Autónoma de Chihuahua, Periférico R. Almada Km. 1C.P. 31453, Chihuahua, México. Electronic address:

View Article

Download full-text PDF

 Source
https://linkinghub.elsevier.com/retrieve/pii/S14769271163037
Publisher Site
http://dx.doi.org/10.1016/j.compbiolchem.2016.11.001DOI Listing
February 2017

Erratum to: Making sense of big data in health research: towards an EU action plan.

Authors:
Charles Auffray Rudi Balling Inês Barroso László Bencze Mikael Benson Jay Bergeron Enrique Bernal-Delgado Niklas Blomberg Christoph Bock Ana Conesa Susanna Del Signore Christophe Delogne Peter Devilee Alberto Di Meglio Marinus Eijkemans Paul Flicek Norbert Graf Vera Grimm Henk-Jan Guchelaar Yi-Ke Guo Ivo Glynne Gut Allan Hanbury Shahid Hanif Ralf-Dieter Hilgers Ángel Honrado D Rod Hose Jeanine Houwing-Duistermaat Tim Hubbard Sophie Helen Janacek Haralampos Karanikas Tim Kievits Manfred Kohler Andreas Kremer Jerry Lanfear Thomas Lengauer Edith Maes Theo Meert Werner Müller Dörthe Nickel Peter Oledzki Bertrand Pedersen Milan Petkovic Konstantinos Pliakos Magnus Rattray Josep Redón I Màs Reinhard Schneider Thierry Sengstag Xavier Serra-Picamal Wouter Spek Lea A I Vaas Okker van Batenburg Marc Vandelaer Peter Varnai Pablo Villoslada Juan Antonio Vizcaíno John Peter Mary Wubbe Gianluigi Zanetti

Genome Med 2016 11 7;8(1):118. Epub 2016 Nov 7.

CRS4, Ed.1 POLARIS, 09129, Pula, Italy.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1186/s13073-016-0376-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5100330PMC
November 2016

RGmatch: matching genomic regions to proximal genes in omics data integration.

Authors:
Pedro Furió-Tarí Ana Conesa Sonia Tarazona

BMC Bioinformatics 2016 Nov 22;17(Suppl 15):427. Epub 2016 Nov 22.

Genomics of Gene Expression Laboratory, Gene Expression and Epigenomics Program, Centro de Investigación Príncipe Felipe, Eduardo Primo Yúfera 3, 46012, Valencia, Spain.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1186/s12859-016-1293-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5133492PMC
November 2016

Transcriptome modulation during host shift is driven by secondary metabolites in desert Drosophila.

Authors:
Diego N De Panis Julián Padró Pedro Furió-Tarí Sonia Tarazona Pablo S Milla Carmona Ignacio M Soto Hernán Dopazo Ana Conesa Esteban Hasson

Mol Ecol 2016 09 6;25(18):4534-50. Epub 2016 Sep 6.

IEGEBA-CONICET, UNiversidad de Buenos Aires, FAcultad de Ciencias Exactas y Naturales, Intendente Güiraldes 2160, Ciudad Universitaria (C1428 EHA), CABA, Argentina.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1111/mec.13785DOI Listing
September 2016

Erratum to: A survey of best practices for RNA-seq data analysis.

Authors:
Ana Conesa Pedro Madrigal Sonia Tarazona David Gomez-Cabrero Alejandra Cervera Andrew McPherson Michal Wojciech Szcześniak Daniel J Gaffney Laura L Elo Xuegong Zhang Ali Mortazavi

Genome Biol 2016 Aug 26;17(1):181. Epub 2016 Aug 26.

Department of Developmental and Cell Biology, University of California, Irvine, Irvine, CA, 92697-2300, USA.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1186/s13059-016-1047-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5000515PMC
August 2016

spongeScan: A web for detecting microRNA binding elements in lncRNA sequences.

Authors:
Pedro Furió-Tarí Sonia Tarazona Toni Gabaldón Anton J Enright Ana Conesa

Nucleic Acids Res 2016 07 19;44(W1):W176-80. Epub 2016 May 19.

Genomics of Gene Expression Lab, Centro de Investigación Príncipe Felipe (CIPF), 46012 Valencia, Spain Microbiology and Cell Science, IFAS, University of Florida, Gainesville, USA

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1093/nar/gkw443DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987953PMC
July 2016

Separating common from distinctive variation.

Authors:
Frans M van der Kloet Patricia Sebastián-León Ana Conesa Age K Smilde Johan A Westerhuis

BMC Bioinformatics 2016 Jun 6;17 Suppl 5:195. Epub 2016 Jun 6.

Biosystems Data Analysis, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, 1098, XH, Amsterdam, The Netherlands.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1186/s12859-016-1037-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4905617PMC
June 2016

Making sense of big data in health research: Towards an EU action plan.

Authors:
Charles Auffray Rudi Balling Inês Barroso László Bencze Mikael Benson Jay Bergeron Enrique Bernal-Delgado Niklas Blomberg Christoph Bock Ana Conesa Susanna Del Signore Christophe Delogne Peter Devilee Alberto Di Meglio Marinus Eijkemans Paul Flicek Norbert Graf Vera Grimm Henk-Jan Guchelaar Yi-Ke Guo Ivo Glynne Gut Allan Hanbury Shahid Hanif Ralf-Dieter Hilgers Ángel Honrado D Rod Hose Jeanine Houwing-Duistermaat Tim Hubbard Sophie Helen Janacek Haralampos Karanikas Tim Kievits Manfred Kohler Andreas Kremer Jerry Lanfear Thomas Lengauer Edith Maes Theo Meert Werner Müller Dörthe Nickel Peter Oledzki Bertrand Pedersen Milan Petkovic Konstantinos Pliakos Magnus Rattray Josep Redón I Màs Reinhard Schneider Thierry Sengstag Xavier Serra-Picamal Wouter Spek Lea A I Vaas Okker van Batenburg Marc Vandelaer Peter Varnai Pablo Villoslada Juan Antonio Vizcaíno John Peter Mary Wubbe Gianluigi Zanetti

Genome Med 2016 06 23;8(1):71. Epub 2016 Jun 23.

CRS4, Ed.1 POLARIS, 09129, Pula, Italy.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1186/s13073-016-0323-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4919856PMC
June 2016

[Ileocolic fistulas after radiotherapy for endometrial carcinoma].

Authors:
Noelia Alcaide Benito Velayos Guillermo González Redondo Edel Berroa de la Rosa Ana Macho Conesa Luis Fernández Salazar Isabel Jiménez José Manuel González

Gastroenterol Hepatol 2016 Jan 18;39(1):23-4. Epub 2015 Feb 18.

Servicio de Aparato Digestivo, Hospital Clínico Universitario, Valladolid.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1016/j.gastrohep.2014.12.009DOI Listing
January 2016

Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data.

Authors:
Konstantin Okonechnikov Ana Conesa Fernando García-Alcalde

Bioinformatics 2016 Jan 1;32(2):292-4. Epub 2015 Oct 1.

Department of Molecular Biology, Max Planck Institute for Infection Biology, D-10117, Berlin, Germany.

View Article

Download full-text PDF

 Source
https://academic.oup.com/bioinformatics/article-lookup/doi/1
Publisher Site
http://dx.doi.org/10.1093/bioinformatics/btv566DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4708105PMC
January 2016

A survey of best practices for RNA-seq data analysis.

Authors:
Ana Conesa Pedro Madrigal Sonia Tarazona David Gomez-Cabrero Alejandra Cervera Andrew McPherson Michał Wojciech Szcześniak Daniel J Gaffney Laura L Elo Xuegong Zhang Ali Mortazavi

Genome Biol 2016 Jan 26;17:13. Epub 2016 Jan 26.

Department of Developmental and Cell Biology, University of California, Irvine, Irvine, CA, 92697-2300, USA.

View Article

Download full-text PDF

 Source
http://link.springer.com/content/pdf/10.1186%2Fs13059-016-08
Web Search
http://genomebiology.com/2016/17/1/13
Publisher Site
http://dx.doi.org/10.1186/s13059-016-0881-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4728800PMC
January 2016

Data quality aware analysis of differential expression in RNA-seq with NOISeq R/Bioc package.

Authors:
Sonia Tarazona Pedro Furió-Tarí David Turrà Antonio Di Pietro María José Nueda Alberto Ferrer Ana Conesa

Nucleic Acids Res 2015 Dec 16;43(21):e140. Epub 2015 Jul 16.

Genomics of Gene Expression Lab, Centro de Investigación Príncipe Felipe, Eduardo Primo Yúfera 3, 46012, Valencia, Spain Microbiology and Cell Science Department, Institute for Food and Agricultural Sciences, University of Florida, Gainesville, FL 32603, USA

View Article

Download full-text PDF

 Source
https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
Publisher Site
http://dx.doi.org/10.1093/nar/gkv711DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4666377PMC
December 2015

Comparative RNA-seq analysis of the Tritrichomonas foetus PIG30/1 isolate from pigs reveals close association with Tritrichomonas foetus BP-4 isolate 'bovine genotype'.

Authors:
Victoria Morin-Adeline Kai Mueller Ana Conesa Jan Šlapeta

Vet Parasitol 2015 Sep 14;212(3-4):111-7. Epub 2015 Aug 14.

Faculty of Veterinary Science, McMaster Building B14, University of Sydney, New South Wales 2006, Australia. Electronic address:

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1016/j.vetpar.2015.08.012DOI Listing
September 2015

Methylome profiling reveals functions and genes which are differentially methylated in serrated compared to conventional colorectal carcinoma.

Authors:
Pablo Conesa-Zamora José García-Solano María Del Carmen Turpin Patricia Sebastián-León Daniel Torres-Moreno Eduardo Estrada Anne Tuomisto Jamie Wilce Markus J Mäkinen Miguel Pérez-Guillermo Ana Conesa

Clin Epigenetics 2015 17;7:101. Epub 2015 Sep 17.

Department of Bioinformatics and Genomics, Centro de Investigación Príncipe Felipe (CIPF), Yúfera, 3, 46012 Valencia, Spain ; Microbiology and Cell Science, Institute of Food and Agricultural Science, University of Florida, Gainesville, USA.

View Article

Download full-text PDF

 Source
http://www.clinicalepigeneticsjournal.com/content/7/1/101
Publisher Site
http://dx.doi.org/10.1186/s13148-015-0128-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4574063PMC
September 2015

RNAseq analysis of Aspergillus fumigatus in blood reveals a just wait and see resting stage behavior.

Authors:
Henriette Irmer Sonia Tarazona Christoph Sasse Patrick Olbermann Jürgen Loeffler Sven Krappmann Ana Conesa Gerhard H Braus

BMC Genomics 2015 Aug 27;16:640. Epub 2015 Aug 27.

Institut für Mikrobiologie und Genetik, Georg-August-Universität Göttingen, Grisebachstraße 8, D-37077, Göttingen, Germany.

View Article

Download full-text PDF

 Source
http://www.biomedcentral.com/1471-2164/16/640
Publisher Site
http://dx.doi.org/10.1186/s12864-015-1853-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4551469PMC
August 2015

Pathway network inference from gene expression data.

Authors:
Ignacio Ponzoni María Nueda Sonia Tarazona Stefan Götz David Montaner Julieta Dussaut Joaquín Dopazo Ana Conesa

BMC Syst Biol 2014 13;8 Suppl 2:S7. Epub 2014 Mar 13.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1186/1752-0509-8-S2-S7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4101702PMC
March 2015

Data integration in the era of omics: current and future challenges.

Authors:
David Gomez-Cabrero Imad Abugessaisa Dieter Maier Andrew Teschendorff Matthias Merkenschlager Andreas Gisel Esteban Ballestar Erik Bongcam-Rudloff Ana Conesa Jesper Tegnér

BMC Syst Biol 2014 13;8 Suppl 2:I1. Epub 2014 Mar 13.

View Article

Download full-text PDF

 Source
http://link.springer.com/content/pdf/10.1186%2F1752-0509-8-S
Web Search
http://dx.doi.org/10.1186/1752-0509-8-S2-I1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4101704PMC
March 2015

The common ground of genomics and systems biology.

Authors:
Ana Conesa Ali Mortazavi

BMC Syst Biol 2014 13;8 Suppl 2:S1. Epub 2014 Mar 13.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1186/1752-0509-8-S2-S1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4101703PMC
March 2015

STATegra EMS: an Experiment Management System for complex next-generation omics experiments.

Authors:
Rafael Hernández-de-Diego Noemi Boix-Chova David Gómez-Cabrero Jesper Tegner Imad Abugessaisa Ana Conesa

BMC Syst Biol 2014 13;8 Suppl 2:S9. Epub 2014 Mar 13.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1186/1752-0509-8-S2-S9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4101697PMC
March 2015

Two independent epigenetic biomarkers predict survival in neuroblastoma.

Authors:
Yania Yáñez Elena Grau Virginia C Rodríguez-Cortez David Hervás Enrique Vidal Rosa Noguera Miguel Hernández Vanessa Segura Adela Cañete Ana Conesa Jaime Font de Mora Victoria Castel

Clin Epigenetics 2015 27;7:16. Epub 2015 Feb 27.

Pediatric Oncology Unit, Hospital Universitari i Politècnic La Fe, Avda Fernando Abril Martorell, Valencia, 46026 Spain.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1186/s13148-015-0054-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4357365PMC
March 2015

Comparative transcriptomics reveals striking similarities between the bovine and feline isolates of Tritrichomonas foetus: consequences for in silico drug-target identification.

Authors:
Victoria Morin-Adeline Rodrigo Lomas Denis O'Meally Colin Stack Ana Conesa Jan Šlapeta

BMC Genomics 2014 Nov 5;15:955. Epub 2014 Nov 5.

Faculty of Veterinary Science, University of Sydney, New South Wales 2006, Australia.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1186/1471-2164-15-955DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4247702PMC
November 2014

Understanding disease mechanisms with models of signaling pathway activities.

Authors:
Patricia Sebastian-Leon Enrique Vidal Pablo Minguez Ana Conesa Sonia Tarazona Alicia Amadoz Carmen Armero Francisco Salavert Antonio Vidal-Puig David Montaner Joaquín Dopazo

BMC Syst Biol 2014 Oct 25;8:121. Epub 2014 Oct 25.

Department of Computational Genomics, Centro de Investigación Príncipe Felipe (CIPF), Avda. Autopista del Saler, 16, 46012, Valencia, Spain.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1186/s12918-014-0121-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4213475PMC
October 2014

Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series.

Authors:
María José Nueda Sonia Tarazona Ana Conesa

Bioinformatics 2014 Sep 3;30(18):2598-602. Epub 2014 Jun 3.

Statistics and Operational Research Department, University of Alicante, 03690, Alicante, Spain, Genomics of Gene Expression Laboratory, Prince Felipe Research Centre, 46012 Valencia, Spain and Applied Statistics, Operational Research and Quality Department, Polytechnic University of Valencia, 46020 Valencia, Spain.

View Article

Download full-text PDF

 Source
http://bioinformatics.oxfordjournals.org/content/30/18/2598.
Web Search
http://bioinformatics.oxfordjournals.org/cgi/doi/10.1093/bio
Publisher Site
http://dx.doi.org/10.1093/bioinformatics/btu333DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4155246PMC
September 2014

Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures.

Authors:
Sarah A Munro Steven P Lund P Scott Pine Hans Binder Djork-Arné Clevert Ana Conesa Joaquin Dopazo Mario Fasold Sepp Hochreiter Huixiao Hong Nadereh Jafari David P Kreil Paweł P Łabaj Sheng Li Yang Liao Simon M Lin Joseph Meehan Christopher E Mason Javier Santoyo-Lopez Robert A Setterquist Leming Shi Wei Shi Gordon K Smyth Nancy Stralis-Pavese Zhenqiang Su Weida Tong Charles Wang Jian Wang Joshua Xu Zhan Ye Yong Yang Ying Yu Marc Salit

Nat Commun 2014 Sep 25;5:5125. Epub 2014 Sep 25.

1] National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, Maryland 20899, USA [2] Department of Bioengineering, Stanford University, 443 Via Ortega, Stanford, California 94305, USA.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1038/ncomms6125DOI Listing
September 2014

Relationship between genome and epigenome--challenges and requirements for future research.

Authors:
Geneviève Almouzni Lucia Altucci Bruno Amati Neil Ashley David Baulcombe Nathalie Beaujean Christoph Bock Erik Bongcam-Rudloff Jean Bousquet Sigurd Braun Brigitte Bressac-de Paillerets Marion Bussemakers Laura Clarke Ana Conesa Xavier Estivill Alireza Fazeli Neža Grgurević Ivo Gut Bastiaan T Heijmans Sylvie Hermouet Jeanine Houwing-Duistermaat Ilaria Iacobucci Janez Ilaš Raju Kandimalla Susanne Krauss-Etschmann Paul Lasko Sören Lehmann Anders Lindroth Gregor Majdič Eric Marcotte Giovanni Martinelli Nadine Martinet Eric Meyer Cristina Miceli Ken Mills Maria Moreno-Villanueva Ghislaine Morvan Dörthe Nickel Beate Niesler Mariusz Nowacki Jacek Nowak Stephan Ossowski Mattia Pelizzola Roland Pochet Uroš Potočnik Magdalena Radwanska Jeroen Raes Magnus Rattray Mark D Robinson Bernard Roelen Sascha Sauer Dieter Schinzer Eline Slagboom Tim Spector Hendrik G Stunnenberg Ekaterini Tiligada Maria-Elena Torres-Padilla Roula Tsonaka Ann Van Soom Melita Vidaković Martin Widschwendter

BMC Genomics 2014 Jun 18;15:487. Epub 2014 Jun 18.

Department of Women's Cancer, UCL Elizabeth Garrett Anderson Institute for Women's Health, University College London, 74 Huntley Street, London WC1E 6AU, UK.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1186/1471-2164-15-487DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4073504PMC
June 2014

Sequencing and functional analysis of the genome of a nematode egg-parasitic fungus, Pochonia chlamydosporia.

Authors:
Eduardo Larriba María D L A Jaime José Carbonell-Caballero Ana Conesa Joaquín Dopazo Corey Nislow José Martín-Nieto Luis Vicente Lopez-Llorca

Fungal Genet Biol 2014 Apr 13;65:69-80. Epub 2014 Feb 13.

Department of Marine Sciences and Applied Biology, University of Alicante, P.O. Box. 99, E-03080 Alicante, Spain; Multidisciplinary Institute for Environmental Studies (MIES) "Ramón Margalef", University of Alicante, Alicante, Spain. Electronic address:

View Article

Download full-text PDF

 Source
https://linkinghub.elsevier.com/retrieve/pii/S10871845140001
Publisher Site
http://dx.doi.org/10.1016/j.fgb.2014.02.002DOI Listing
April 2014

Defining the genomic signature of totipotency and pluripotency during early human development.

Authors:
Amparo Galan Patricia Diaz-Gimeno Maria Eugenia Poo Diana Valbuena Eva Sanchez Veronica Ruiz Joaquin Dopazo David Montaner Ana Conesa Carlos Simon

PLoS One 2013 17;8(4):e62135. Epub 2013 Apr 17.

Valencia Node of The National Stem Cell Bank, Centro de Investigación Príncipe Felipe, Valencia, Spain.

View Article

Download full-text PDF

 Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0062135PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3629124PMC
November 2013

Transdifferentiation of MALME-3M and MCF-7 Cells toward Adipocyte-like Cells is Dependent on Clathrin-mediated Endocytosis.

Authors:
Jaime Carcel-Trullols Cristóbal Aguilar-Gallardo Fernando Garcia-Alcalde Miguel Angel Pardo-Cea Joaquin Dopazo Ana Conesa Carlos Simón

Springerplus 2012 30;1:44. Epub 2012 Oct 30.

Bioinformatics and Genomics Department, Prince Felipe Research Centre (CIPF), Avda. Autopista del Saler, 16-3 46012 Valencia, Spain.

View Article

Download full-text PDF

 Source
http://springerplus.springeropen.com/articles/10.1186/2193-1
Publisher Site
http://dx.doi.org/10.1186/2193-1801-1-44DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3725915PMC
August 2013

Development, characterization and experimental validation of a cultivated sunflower (Helianthus annuus L.) gene expression oligonucleotide microarray.

Authors:
Paula Fernandez Marcelo Soria David Blesa Julio DiRienzo Sebastian Moschen Maximo Rivarola Bernardo Jose Clavijo Sergio Gonzalez Lucila Peluffo Dario Príncipi Guillermo Dosio Luis Aguirrezabal Francisco García-García Ana Conesa Esteban Hopp Joaquín Dopazo Ruth Amelia Heinz Norma Paniego

PLoS One 2012 26;7(10):e45899. Epub 2012 Oct 26.

Instituto de Biotecnología, Centro de Investigaciones en Ciencias Agronómicas y Veterinarias, Instituto Nacional de Tecnología Agropecuaria, Hurlingham, Buenos Aires, Argentina.

View Article

Download full-text PDF

 Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0045899PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3482228PMC
April 2013

Expression profiling shows differential molecular pathways and provides potential new diagnostic biomarkers for colorectal serrated adenocarcinoma.

Authors:
Pablo Conesa-Zamora José García-Solano Francisco García-García María Del Carmen Turpin Javier Trujillo-Santos Daniel Torres-Moreno Isabel Oviedo-Ramírez Rosa Carbonell-Muñoz Encarnación Muñoz-Delgado Edith Rodriguez-Braun Ana Conesa Miguel Pérez-Guillermo

Int J Cancer 2013 Jan 28;132(2):297-307. Epub 2012 Jun 28.

Department of Pathology, Santa Lucía General University Hospital, Cartagena, Spain.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1002/ijc.27674DOI Listing
January 2013

Microarray analysis of Etrog citron (Citrus medica L.) reveals changes in chloroplast, cell wall, peroxidase and symporter activities in response to viroid infection.

Authors:
Serena Rizza Ana Conesa José Juarez Antonino Catara Luis Navarro Nuria Duran-Vila Gema Ancillo

Mol Plant Pathol 2012 Oct 15;13(8):852-64. Epub 2012 Mar 15.

Department of Phytosanitary Sciences and Technologies-University of Catania, Via S. Sofia 102, 95123 Catania, Italy.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1111/j.1364-3703.2012.00794.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6638686PMC
October 2012

Qualimap: evaluating next-generation sequencing alignment data.

Authors:
Fernando García-Alcalde Konstantin Okonechnikov José Carbonell Luis M Cruz Stefan Götz Sonia Tarazona Joaquín Dopazo Thomas F Meyer Ana Conesa

Bioinformatics 2012 Oct 22;28(20):2678-9. Epub 2012 Aug 22.

Bioinformatics and Genomics Department, Centro de Investigación Príncipe Felipe, Valencia, Spain.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1093/bioinformatics/bts503DOI Listing
October 2012

Early gene expression events in the laminar abscission zone of abscission-promoted citrus leaves after a cycle of water stress/rehydration: involvement of CitbHLH1.

Authors:
Javier Agustí Jacinta Gimeno Paz Merelo Ramón Serrano Manuel Cercós Ana Conesa Manuel Talón Francisco R Tadeo

J Exp Bot 2012 Oct 1;63(17):6079-91. Epub 2012 Oct 1.

Institut Valencià d'Investigacions Agràries (IVIA), Centre de Genómica. Apartat Oficial 46113, Montcada (València), Spain.

View Article

Download full-text PDF

 Source
https://academic.oup.com/jxb/article-lookup/doi/10.1093/jxb/
Publisher Site
http://dx.doi.org/10.1093/jxb/ers270DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3481208PMC
October 2012

Transcriptome profiling of the intoxication response of Tenebrio molitor larvae to Bacillus thuringiensis Cry3Aa protoxin.

Authors:
Brenda Oppert Scot E Dowd Pascal Bouffard Lewyn Li Ana Conesa Marcé D Lorenzen Michelle Toutges Jeremy Marshall Diana L Huestis Jeff Fabrick Cris Oppert Juan Luis Jurat-Fuentes

PLoS One 2012 25;7(4):e34624. Epub 2012 Apr 25.

USDA Agricultural Research Service, Center for Grain and Animal Health Research, Manhattan, Kansas, United States of America.

View Article

Download full-text PDF

 Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0034624PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3338813PMC
September 2012

ARSyN: a method for the identification and removal of systematic noise in multifactorial time course microarray experiments.

Authors:
Maria J Nueda Alberto Ferrer Ana Conesa

Biostatistics 2012 Jul 14;13(3):553-66. Epub 2011 Nov 14.

Departamento de Estadística e Investigación Operativa, Universidad de Alicante, Apartado 03080, Alicante, Spain.

View Article

Download full-text PDF

 Source
https://academic.oup.com/biostatistics/article-lookup/doi/10
Publisher Site
http://dx.doi.org/10.1093/biostatistics/kxr042DOI Listing
July 2012

Identification of yeast genes that confer resistance to chitosan oligosaccharide (COS) using chemogenomics.

Authors:
Maria D L A Jaime Luis Vicente Lopez-Llorca Ana Conesa Anna Y Lee Michael Proctor Lawrence E Heisler Marinella Gebbia Guri Giaever J Timothy Westwood Corey Nislow

BMC Genomics 2012 Jun 22;13:267. Epub 2012 Jun 22.

Department of Cell and Systems Biology, University of Toronto, Mississauga, Ontario, Canada.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1186/1471-2164-13-267DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3505485PMC
June 2012

Mining of miRNAs and potential targets from gene oriented clusters of transcripts sequences of the anti-malarial plant, Artemisia annua.

Authors:
Alvaro L Pérez-Quintero Gaurav Sablok Tatiana V Tatarinova Ana Conesa Jimmy Kuo Camilo López

Biotechnol Lett 2012 Apr 9;34(4):737-45. Epub 2011 Dec 9.

Departamento de Biología, Universidad Nacional de Colombia, Bogotá, Bogota, DC, Colombia.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1007/s10529-011-0808-0DOI Listing
April 2012

Histone modifications and expression of DAM6 gene in peach are modulated during bud dormancy release in a cultivar-dependent manner.

Authors:
Carmen Leida Ana Conesa Gerardo Llácer María Luisa Badenes Gabino Ríos

New Phytol 2012 Jan 7;193(1):67-80. Epub 2011 Sep 7.

Instituto Valenciano de Investigaciones Agrarias (IVIA), carretera Moncada-Náquera km 4.5, ES-46113 Moncada, Valencia, Spain.

View Article

Download full-text PDF

 Source
http://doi.wiley.com/10.1111/j.1469-8137.2011.03863.x
Publisher Site
http://dx.doi.org/10.1111/j.1469-8137.2011.03863.xDOI Listing
January 2012

Differential expression in RNA-seq: a matter of depth.

Authors:
Sonia Tarazona Fernando García-Alcalde Joaquín Dopazo Alberto Ferrer Ana Conesa

Genome Res 2011 Dec 8;21(12):2213-23. Epub 2011 Sep 8.

Bioinformatics and Genomics Department, Centro de Investigación Príncipe Felipe, 46012 Valencia, Spain.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1101/gr.124321.111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3227109PMC
December 2011

Large-scale transcriptional profiling and functional assays reveal important roles for Rho-GTPase signalling and SCL during haematopoietic differentiation of human embryonic stem cells.

Authors:
Sun Yung Maria Ledran Inmaculada Moreno-Gimeno Ana Conesa David Montaner Joaquín Dopazo Ian Dimmick Nicholas J Slater Lamin Marenah Pedro J Real Iliana Paraskevopoulou Viviana Bisbal Deborah Burks Mauro Santibanez-Koref Ruben Moreno Joanne Mountford Pablo Menendez Lyle Armstrong Majlinda Lako

Hum Mol Genet 2011 Dec 21;20(24):4932-46. Epub 2011 Sep 21.

Institute of Genetic Medicine, Newcastle University, Newcastle upon Tyne, UK.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1093/hmg/ddr431DOI Listing
December 2011

Fortunella margarita transcriptional reprogramming triggered by Xanthomonas citri subsp. citri.

Authors:
Abeer A Khalaf Frederick G Gmitter Ana Conesa Joaquin Dopazo Gloria A Moore

BMC Plant Biol 2011 Nov 11;11:159. Epub 2011 Nov 11.

Plant Molecular and Cellular Biology Program (PMCB), Horticultural Sciences Department, University of Florida, Gainesville, FL 32611, USA.

View Article

Download full-text PDF

 Source
http://bmcplantbiol.biomedcentral.com/articles/10.1186/1471-
Publisher Site
http://dx.doi.org/10.1186/1471-2229-11-159DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3235979PMC
November 2011

Profiling the venom gland transcriptomes of Costa Rican snakes by 454 pyrosequencing.

Authors:
Jordi Durban Paula Juárez Yamileth Angulo Bruno Lomonte Marietta Flores-Diaz Alberto Alape-Girón Mahmood Sasa Libia Sanz José M Gutiérrez Joaquín Dopazo Ana Conesa Juan J Calvete

BMC Genomics 2011 May 23;12:259. Epub 2011 May 23.

Consejo Superior de Investigaciones Científicas, Jaime Roig, Valencia, Spain.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1186/1471-2164-12-259DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3128066PMC
May 2011

B2G-FAR, a species-centered GO annotation repository.

Authors:
Stefan Götz Roland Arnold Patricia Sebastián-León Samuel Martín-Rodríguez Patrick Tischler Marc-André Jehl Joaquín Dopazo Thomas Rattei Ana Conesa

Bioinformatics 2011 Apr 18;27(7):919-24. Epub 2011 Feb 18.

Bioinformatics and Genomics Department, Centro de Investigaciones Príncipe Felipe (CIPF), Valencia, Spain.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1093/bioinformatics/btr059DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3065692PMC
April 2011

Modeling human endometrial decidualization from the interaction between proteome and secretome.

Authors:
Tamara Garrido-Gomez Francisco Dominguez Juan Antonio Lopez Emilio Camafeita Alicia Quiñonero Jose Antonio Martinez-Conejero Antonio Pellicer Ana Conesa Carlos Simón

J Clin Endocrinol Metab 2011 Mar 29;96(3):706-16. Epub 2010 Dec 29.

Fundación IVI-Instituto Universitario IVI-Universidad de Valencia, INCLIVA Valencia 46015, Spain.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1210/jc.2010-1825DOI Listing
March 2011

Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data.

Authors:
Fernando García-Alcalde Federico García-López Joaquín Dopazo Ana Conesa

Bioinformatics 2011 Jan 23;27(1):137-9. Epub 2010 Nov 23.

Bioinformatics and Genomics Department, Centro de Investigaciones Príncipe Felipe, Valencia, Spain.

View Article

Download full-text PDF

 Source
http://bioinformatics.oxfordjournals.org/content/early/2010/
Web Search
https://academic.oup.com/bioinformatics/article-lookup/doi/1
Publisher Site
http://dx.doi.org/10.1093/bioinformatics/btq594DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3008637PMC
January 2011

Blast2GO: A comprehensive suite for functional analysis in plant genomics.

Authors:
Ana Conesa Stefan Götz

Int J Plant Genomics 2008 ;2008:619832

Bioinformatics Department, Centro de Investigación Príncipe Felipe, Valencia, Spain.

View Article

Download full-text PDF

 Source
https://www.hindawi.com/archive/2008/619832/
Publisher Site
http://dx.doi.org/10.1155/2008/619832DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2375974PMC
July 2010

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling.

Authors:
Ignacio Medina José Carbonell Luis Pulido Sara C Madeira Stefan Goetz Ana Conesa Joaquín Tárraga Alberto Pascual-Montano Ruben Nogales-Cadenas Javier Santoyo Francisco García Martina Marbà David Montaner Joaquín Dopazo

Nucleic Acids Res 2010 Jul 16;38(Web Server issue):W210-3. Epub 2010 May 16.

Bioinformatics Department, Centro de Investigación Príncipe Felipe, Autopista del Saler 16, Valencia, Spain.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1093/nar/gkq388DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896184PMC
July 2010

Serial Expression Analysis: a web tool for the analysis of serial gene expression data.

Authors:
Maria José Nueda José Carbonell Ignacio Medina Joaquín Dopazo Ana Conesa

Nucleic Acids Res 2010 Jul 4;38(Web Server issue):W239-45. Epub 2010 Jun 4.

Statistics and Operation Research Department, University of Alicante, Spain.

View Article

Download full-text PDF

 Source
https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
Publisher Site
http://dx.doi.org/10.1093/nar/gkq488DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896172PMC
July 2010

Hypoxia promotes efficient differentiation of human embryonic stem cells to functional endothelium.

Authors:
Sonia Prado-Lopez Ana Conesa Ana Armiñán Magdalena Martínez-Losa Carmen Escobedo-Lucea Carolina Gandia Sonia Tarazona Dario Melguizo David Blesa David Montaner Silvia Sanz-González Pilar Sepúlveda Stefan Götz José Enrique O'Connor Rubén Moreno Joaquín Dopazo Deborah J Burks Miodrag Stojkovic

Stem Cells 2010 Mar;28(3):407-18

Cellular Reprogramming Laboratory, Avenida del Autopista del Saler 16, 46013 Valencia, Spain.

View Article

Download full-text PDF

 Source
http://doi.wiley.com/10.1002/stem.295
Publisher Site
http://dx.doi.org/10.1002/stem.295DOI Listing
March 2010

Initial genomics of the human nucleolus.

Authors:
Attila Németh Ana Conesa Javier Santoyo-Lopez Ignacio Medina David Montaner Bálint Péterfia Irina Solovei Thomas Cremer Joaquin Dopazo Gernot Längst

PLoS Genet 2010 Mar 26;6(3):e1000889. Epub 2010 Mar 26.

Department of Biochemistry III, University of Regensburg, Regensburg, Germany.

View Article

Download full-text PDF

 Source
https://epub.ub.uni-muenchen.de/15791/1/oa_15791.pdf
Web Search
http://dx.plos.org/10.1371/journal.pgen.1000889
Publisher Site
http://dx.doi.org/10.1371/journal.pgen.1000889DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2845662PMC
March 2010

SIMAP--a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters.

Authors:
Thomas Rattei Patrick Tischler Stefan Götz Marc-André Jehl Jonathan Hoser Roland Arnold Ana Conesa Hans-Werner Mewes

Nucleic Acids Res 2010 Jan 11;38(Database issue):D223-6. Epub 2009 Nov 11.

Department of Genome Oriented Bioinformatics, Technische Universität München, Wissenschaftszentrum Weihenstephan, Freising, Germany.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1093/nar/gkp949DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808863PMC
January 2010

Parallel changes in gene expression in peripheral blood mononuclear cells and the brain after maternal separation in the mouse.

Authors:
Johan H van Heerden Ana Conesa Dan J Stein David Montaner Vivienne Russell Nicola Illing

BMC Res Notes 2009 Sep 25;2:195. Epub 2009 Sep 25.

Department of Molecular and Cell Biology, University of Cape Town, Rondebosch, 7701, South Africa.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1186/1756-0500-2-195DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2759952PMC
September 2009

Membrane transporters and carbon metabolism implicated in chloride homeostasis differentiate salt stress responses in tolerant and sensitive Citrus rootstocks.

Authors:
Javier Brumós José M Colmenero-Flores Ana Conesa Pedro Izquierdo Guadalupe Sánchez Domingo J Iglesias María F López-Climent Aurelio Gómez-Cadenas Manuel Talón

Funct Integr Genomics 2009 Aug 4;9(3):293-309. Epub 2009 Feb 4.

Instituto Valenciano de Investigaciones Agrarias, Centro de Genómica, Ctra Moncada-Náquera Km 4.6, Moncada, Valencia, Spain.

View Article

Download full-text PDF

 Source
http://link.springer.com/10.1007/s10142-008-0107-6
Publisher Site
http://dx.doi.org/10.1007/s10142-008-0107-6DOI Listing
August 2009

Functional assessment of time course microarray data.

Authors:
María José Nueda Patricia Sebastián Sonia Tarazona Francisco García-García Joaquín Dopazo Alberto Ferrer Ana Conesa

BMC Bioinformatics 2009 Jun 16;10 Suppl 6:S9. Epub 2009 Jun 16.

Department of Statistics and Operation Research, University of Alicante, Ctra, San Vicente del Raspeig, S/N 03690 Alicante, Spain.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1186/1471-2105-10-S6-S9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2697656PMC
June 2009

Direct functional assessment of the composite phenotype through multivariate projection strategies.

Authors:
Ana Conesa Rasmus Bro Francisco García-García José Manuel Prats Stefan Götz Karin Kjeldahl David Montaner Joaquín Dopazo

Genomics 2008 Dec 13;92(6):373-83. Epub 2008 Sep 13.

Bioinformatics Department, Centro de Investigación Principe Felipe, Valencia, Spain.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1016/j.ygeno.2008.05.015DOI Listing
December 2008

Transcriptional profiling of mRNA expression in the mouse distal colon.

Authors:
Willemijntje A Hoogerwerf Mala Sinha Ana Conesa Bruce A Luxon Vahakn B Shahinian Germaine Cornélissen Franz Halberg Jonathon Bostwick John Timm Vincent M Cassone

Gastroenterology 2008 Dec 3;135(6):2019-29. Epub 2008 Sep 3.

Division of Gastroenterology, Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan 48105, USA.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1053/j.gastro.2008.08.048DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2748881PMC
December 2008

Transcriptome analysis provides new insights into liver changes induced in the rat upon dietary administration of the food additives butylated hydroxytoluene, curcumin, propyl gallate and thiabendazole.

Authors:
Rob Stierum Ana Conesa Wilbert Heijne Ben van Ommen Karin Junker Mary P Scott Roger J Price Clive Meredith Brian G Lake John Groten

Food Chem Toxicol 2008 Aug 25;46(8):2616-28. Epub 2008 Apr 25.

TNO Quality of Life, Business Unit Biosciences, P.O. Box 360, 3700 AJ Zeist, The Netherlands.

View Article

Download full-text PDF

 Source
http://linkinghub.elsevier.com/retrieve/pii/S027869150800202
Publisher Site
http://dx.doi.org/10.1016/j.fct.2008.04.019DOI Listing
August 2008

GEPAS, a web-based tool for microarray data analysis and interpretation.

Authors:
Joaquín Tárraga Ignacio Medina José Carbonell Jaime Huerta-Cepas Pablo Minguez Eva Alloza Fátima Al-Shahrour Susana Vegas-Azcárate Stefan Goetz Pablo Escobar Francisco Garcia-Garcia Ana Conesa David Montaner Joaquín Dopazo

Nucleic Acids Res 2008 Jul 28;36(Web Server issue):W308-14. Epub 2008 May 28.

Bioinformatics Department, Centro de Investigación Príncipe Felipe (CIPF), Autopista del Saler 16, E46013, Valencia, Spain.

View Article

Download full-text PDF

 Source
https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
Publisher Site
http://dx.doi.org/10.1093/nar/gkn303DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447723PMC
July 2008

Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments.

Authors:
Fátima Al-Shahrour José Carbonell Pablo Minguez Stefan Goetz Ana Conesa Joaquín Tárraga Ignacio Medina Eva Alloza David Montaner Joaquín Dopazo

Nucleic Acids Res 2008 Jul 31;36(Web Server issue):W341-6. Epub 2008 May 31.

Department of Bioinformatics, Centro de Investigación Príncipe Felipe (CIPF), Autopista del Saler 16, E46013 Valencia, Spain.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1093/nar/gkn318DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447758PMC
July 2008

Large-scale Gene Ontology analysis of plant transcriptome-derived sequences retrieved by AFLP technology.

Authors:
Alessandro Botton Giulio Galla Ana Conesa Christian Bachem Angelo Ramina Gianni Barcaccia

BMC Genomics 2008 Jul 24;9:347. Epub 2008 Jul 24.

Department of Environmental Agronomy and Crop Science, University of Padova, Viale dell'Università 16, Campus of Agripolis, 35020 Legnaro, Italy.

View Article

Download full-text PDF

 Source
http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2
Publisher Site
http://dx.doi.org/10.1186/1471-2164-9-347DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2515857PMC
July 2008

High-throughput functional annotation and data mining with the Blast2GO suite.

Authors:
Stefan Götz Juan Miguel García-Gómez Javier Terol Tim D Williams Shivashankar H Nagaraj María José Nueda Montserrat Robles Manuel Talón Joaquín Dopazo Ana Conesa

Nucleic Acids Res 2008 Jun 29;36(10):3420-35. Epub 2008 Apr 29.

Bioinformatics Department, Centro de Investigación Principe Felipe, Valencia, Spain.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1093/nar/gkn176DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2425479PMC
June 2008

Time course profiling of the retinal transcriptome after optic nerve transection and optic nerve crush.

Authors:
Marta Agudo Maria Cruz Pérez-Marín Ulrika Lönngren Paloma Sobrado Ana Conesa Isabel Cánovas Manuel Salinas-Navarro Jaime Miralles-Imperial Finn Hallböök Manuel Vidal-Sanz

Mol Vis 2008 Jun 3;14:1050-63. Epub 2008 Jun 3.

Departamento Oftalmología, Facultad de Medicina, Universidad de Murcia, Murcia Spain.

View Article

Download full-text PDF

 Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2426719PMC
June 2008

Spatial differentiation in the vegetative mycelium of Aspergillus niger.

Authors:
Ana M Levin Ronald P de Vries Ana Conesa Charissa de Bekker Manuel Talon Hildegard H Menke Noel N M E van Peij Han A B Wösten

Eukaryot Cell 2007 Dec 19;6(12):2311-22. Epub 2007 Oct 19.

Microbiology, Institute of Biomembranes, Utrecht University, Padulaan 8, 3584 CH Utrecht, The Netherlands.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1128/EC.00244-07DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2168252PMC
December 2007

Transcriptional response of Citrus aurantifolia to infection by Citrus tristeza virus.

Authors:
Mónica Gandía Ana Conesa Gema Ancillo José Gadea Javier Forment Vicente Pallás Ricardo Flores Nuria Duran-Vila Pedro Moreno José Guerri

Virology 2007 Oct 9;367(2):298-306. Epub 2007 Jul 9.

Instituto Valenciano de Investigaciones Agrarias, Ctra. Moncada-Náquera Km 4.5, Moncada, 46113, Valencia, Spain.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1016/j.virol.2007.05.025DOI Listing
October 2007

Discovering gene expression patterns in time course microarray experiments by ANOVA-SCA.

Authors:
María José Nueda Ana Conesa Johan A Westerhuis Huub C J Hoefsloot Age K Smilde Manuel Talón Alberto Ferrer

Bioinformatics 2007 Jul 22;23(14):1792-800. Epub 2007 May 22.

Departamento de Estadística e Investigación Operativa, Universidad de Alicante, Apartado 03080, Alicante, Spain.

View Article

Download full-text PDF

 Source
https://academic.oup.com/bioinformatics/article-lookup/doi/1
Publisher Site
http://dx.doi.org/10.1093/bioinformatics/btm251DOI Listing
July 2007

Analysis of 13000 unique Citrus clusters associated with fruit quality, production and salinity tolerance.

Authors:
Javier Terol Ana Conesa Jose M Colmenero Manuel Cercos Francisco Tadeo Javier Agustí Enriqueta Alós Fernando Andres Guillermo Soler Javier Brumos Domingo J Iglesias Stefan Götz Francisco Legaz Xavier Argout Brigitte Courtois Patrick Ollitrault Carole Dossat Patrick Wincker Raphael Morillon Manuel Talon

BMC Genomics 2007 Jan 25;8:31. Epub 2007 Jan 25.

Centro de Genomica, Instituto Valenciano de Investigaciones Agrarias, Carretera Moncada, Náquera, Km, 4,5 Moncada (Valencia) E46113, Spain.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1186/1471-2164-8-31DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1796867PMC
January 2007

Development of the GENIPOL European flounder (Platichthys flesus) microarray and determination of temporal transcriptional responses to cadmium at low dose.

Authors:
Tim D Williams Amer M Diab Stephen G George Rita E Godfrey Victoria Sabine Ana Conesa Steven D Minchin Phil C Watts James K Chipman

Environ Sci Technol 2006 Oct;40(20):6479-88

School of Biosciences, The University of Birmingham, Edgbaston, Birmingham, B15 2TT UK.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1021/es061142hDOI Listing
October 2006