Publications by authors named "Ami S Bhatt"

54Publications

Structured RNA Contaminants in Bacterial Ribo-Seq.

mSphere 2020 10 21;5(5). Epub 2020 Oct 21.

Department of Genetics, Stanford University, Stanford, California, USA

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http://dx.doi.org/10.1128/mSphere.00855-20DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7580957PMC
October 2020

Microbes and microbiomes in 2020 and beyond.

Nat Commun 2020 10 5;11(1):4988. Epub 2020 Oct 5.

Department of Medicine (Hematology, Blood and Marrow Transplantation), Stanford University, Stanford, CA, 94305, USA.

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http://dx.doi.org/10.1038/s41467-020-18850-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7536387PMC
October 2020

MetaRibo-Seq measures translation in microbiomes.

Nat Commun 2020 06 29;11(1):3268. Epub 2020 Jun 29.

Department of Genetics, Stanford University, Stanford, CA, 94305, USA.

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http://dx.doi.org/10.1038/s41467-020-17081-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7324362PMC
June 2020

Complete, closed bacterial genomes from microbiomes using nanopore sequencing.

Nat Biotechnol 2020 06 10;38(6):701-707. Epub 2020 Feb 10.

Department of Genetics, Stanford University, Stanford, CA, USA.

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http://dx.doi.org/10.1038/s41587-020-0422-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7283042PMC
June 2020

Author Correction: Acquisition, transmission and strain diversity of human gut-colonizing crAss-like phages.

Nat Commun 2020 Jan 31;11(1):717. Epub 2020 Jan 31.

Department of Genetics, Stanford University, Stanford, CA, USA.

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http://dx.doi.org/10.1038/s41467-020-14599-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6994482PMC
January 2020

Acquisition, transmission and strain diversity of human gut-colonizing crAss-like phages.

Nat Commun 2020 01 15;11(1):280. Epub 2020 Jan 15.

Department of Genetics, Stanford University, Stanford, CA, USA.

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http://dx.doi.org/10.1038/s41467-019-14103-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6962324PMC
January 2020

A Bioinformatic Analysis of Integrative Mobile Genetic Elements Highlights Their Role in Bacterial Adaptation.

Cell Host Microbe 2020 01 17;27(1):140-153.e9. Epub 2019 Dec 17.

Department of Genetics, Stanford University, Stanford, CA 94305, USA; Department of Medicine (Hematology, Blood and Marrow Transplantation) Stanford University, Stanford, CA 94305, USA. Electronic address:

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http://dx.doi.org/10.1016/j.chom.2019.10.022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6952549PMC
January 2020

Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes.

Cell 2019 08 8;178(5):1245-1259.e14. Epub 2019 Aug 8.

Department of Medicine (Hematology; Blood and Marrow Transplantation) and Genetics, Stanford University, Stanford, CA, USA; Department of Genetics, Stanford University, Stanford, CA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2019.07.016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6764417PMC
August 2019

Surveying Gut Microbiome Research in Africans: Toward Improved Diversity and Representation.

Trends Microbiol 2019 10 6;27(10):824-835. Epub 2019 Jun 6.

School of Medicine, Stanford University, Stanford, CA, USA; Department of Genetics, Stanford University, Stanford, CA, USA; Department of Medicine (Hematology), Stanford University, Stanford, CA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.tim.2019.05.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6764420PMC
October 2019

Microbiome genome structure drives function.

Nat Microbiol 2019 06;4(6):912-913

Department of Genetics, Stanford University, Stanford, CA, USA.

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http://www.nature.com/articles/s41564-019-0473-y
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http://dx.doi.org/10.1038/s41564-019-0473-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6750265PMC
June 2019

Making the microbiome personal.

Authors:
Ami S Bhatt

Nat Med 2019 05;25(5):708

Department of Medicine and Department of Genetics, Stanford University, Stanford, CA, USA.

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http://dx.doi.org/10.1038/s41591-019-0445-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7002014PMC
May 2019

Evaluating Barriers and Opportunities in Delivering High-Quality Oncology Care in a Resource-Limited Setting Using a Comprehensive Needs Assessment Tool.

J Glob Oncol 2018 12;4:1-9

Chika R. Nwachukwu, Lynn Million, Shruti Sheth, Hope Qamoos, and Ami S. Bhatt, Stanford University School of Medicine; Michele Barry, Center for Innovation in Global Health, Stanford University, Stanford; Omobola Mudasiru, University of California Berkley, Berkeley, CA; Joseph O. Onah, Anita Okemini, and Mojisola Rhodes, Clinton Health Access Initiative, Nigeria Country Office; Adekunbiola A. Banjo and Muhameed Habeebu, Lagos University Teaching Hospital, Lagos; Anita Okemini, ONE Campaign, Nigeria Country Office, Abuja; and Tajudeen A. Olasinde, Amadu Bello University Teaching Hospital, Zaira, Nigeria.

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http://dx.doi.org/10.1200/JGO.18.00125DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6818301PMC
December 2018

Institutionalizing healthcare hackathons to promote diversity in collaboration in medicine.

BMC Med Educ 2018 Nov 20;18(1):269. Epub 2018 Nov 20.

Department of Medicine, Stanford University, 269 Campus Drive, Stanford, CA, 94305, USA.

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http://dx.doi.org/10.1186/s12909-018-1385-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6245929PMC
November 2018

High-quality genome sequences of uncultured microbes by assembly of read clouds.

Nat Biotechnol 2018 Oct 15. Epub 2018 Oct 15.

Department of Medicine (Hematology, Blood and Marrow Transplantation) and Department of Genetics, Stanford University, Stanford, California, USA.

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http://www.nature.com/doifinder/10.1038/nbt.4266
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http://dx.doi.org/10.1038/nbt.4266DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6465186PMC
October 2018

With Probiotics, Resistance Is Not Always Futile.

Cell Host Microbe 2018 09;24(3):334-336

Department of Medicine, Hematology & Blood and Marrow Transplantation and Genetics, Stanford University School of Medicine, CCSR 1155b, 269 Campus Drive, Palo Alto, CA 94305, USA. Electronic address:

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http://dx.doi.org/10.1016/j.chom.2018.08.014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6588715PMC
September 2018

Digesting New Developments in Biosensors.

Authors:
Ami S Bhatt

N Engl J Med 2018 08;379(7):686-688

From the Departments of Medicine and Genetics, Stanford University, Stanford, CA.

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http://dx.doi.org/10.1056/NEJMcibr1806952DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6548539PMC
August 2018

Antibiotic practice patterns in hematopoietic cell transplantation: A survey of blood and marrow transplant clinical trials network centers.

Am J Hematol 2018 11 9;93(11):E348-E350. Epub 2018 Sep 9.

Division of Hematology, Oncology, and Transplantation, Department of Medicine, University of Minnesota, Minneapolis, Minnesota.

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http://doi.wiley.com/10.1002/ajh.25236
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http://dx.doi.org/10.1002/ajh.25236DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6196101PMC
November 2018

AGBT meeting report.

Genome Biol 2018 05 21;19(1):60. Epub 2018 May 21.

Departments of Medicine and Genetics, Stanford University School of Medicine, Stanford, CA, 94305, USA.

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http://dx.doi.org/10.1186/s13059-018-1447-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5963147PMC
May 2018

Technological solutions for global hematology and oncology.

Authors:
Ami S Bhatt

Blood Adv 2017 Feb 14;1(6):396. Epub 2017 Feb 14.

Departments of Medicine and Genetics, Center for Innovation in Global Health, Stanford University, Stanford, CA; and Global Oncology, Inc., Boston, MA.

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http://dx.doi.org/10.1182/bloodadvances.2017002139DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5738986PMC
February 2017

Household triclosan and triclocarban effects on the infant and maternal microbiome.

EMBO Mol Med 2017 12;9(12):1732-1741

Division of Infectious Diseases and Geographic Medicine, Department of Medicine, Stanford University, Stanford, CA, USA

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http://dx.doi.org/10.15252/emmm.201707882DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5709730PMC
December 2017

Allied Commensal Forces against Vancomycin-Resistant Enterococci.

Cell Host Microbe 2017 May;21(5):559-560

Department of Genetics, Stanford University, Stanford, CA 94305, USA; Department of Medicine (Hematology), Stanford University, Stanford, CA 94305, USA. Electronic address:

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http://dx.doi.org/10.1016/j.chom.2017.04.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5603308PMC
May 2017

Microbes prevent HSPCs from "NOD"-ing off.

Authors:
Ami S Bhatt

Blood 2017 01;129(2):139-140

STANFORD UNIVERSITY.

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http://dx.doi.org/10.1182/blood-2016-11-750562DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5234225PMC
January 2017

Antibiotics in Hematopoietic Cell Transplantation: Adversaries or Allies?

Biol Blood Marrow Transplant 2016 06 14;22(6):972-974. Epub 2016 Apr 14.

Departments of Medicine (Hematology & Blood and Marrow Transplantation) and Genetics, Stanford University, Stanford, California. Electronic address:

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http://dx.doi.org/10.1016/j.bbmt.2016.04.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4990002PMC
June 2016

Microbiota Manipulation With Prebiotics and Probiotics in Patients Undergoing Stem Cell Transplantation.

Curr Hematol Malig Rep 2016 Feb;11(1):19-28

Department of Medicine, Division of Blood and Marrow Transplantation, Stanford University, Stanford, CA, USA.

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http://dx.doi.org/10.1007/s11899-016-0302-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4996265PMC
February 2016

Launching an Interactive Cancer Projects Map: A Collaborative Approach to Global Cancer Research and Program Development.

J Glob Oncol 2015 Oct 23;1(1):7-10. Epub 2015 Sep 23.

, National Cancer Institute, Center for Global Health, Bethesda, MD; , Global Oncology, Boston, MA, and University of Hawaii, Honolulu, HI; , Global Oncology, Boston, MA, and Dana-Farber Cancer Institute, Boston, MA; , National Cancer Institute, Center for Global Health, Bethesda, MD; , Global Oncology, Boston, MA, and Broad Institute of MIT and Harvard, Cambridge, MA; , Global Oncology, Boston, MA; , Global Oncology, Boston, MA; , Global Oncology, Boston, MA; , National Cancer Institute, Center for Global Health, Bethesda, MD; , National Cancer Institute, Center for Global Heatlh, Bethesda, MD; , Global Oncology, Boston, MA; , National Cancer Institute, Center for Global Health, Bethesda, MD; , Global Oncology, Boston, MA, and Dana-Farber Cancer Institute, Boston, MA; , Global Oncology, Boston, MA, and Stanford University, Stanford, CA.

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http://dx.doi.org/10.1200/JGO.2015.000034DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5551646PMC
October 2015

The human microbiome in hematopoiesis and hematologic disorders.

Blood 2015 Jul 26;126(3):311-8. Epub 2015 May 26.

Departments of Medicine and Genetics, Stanford University, Stanford, CA.

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http://dx.doi.org/10.1182/blood-2015-04-574392DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4504946PMC
July 2015

Bradyrhizobium enterica in cord colitis syndrome.

N Engl J Med 2013 11;369(19):1867

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http://dx.doi.org/10.1056/NEJMc1311318DOI Listing
November 2013

NK-cell and B-cell deficiency with a thymic mass.

N Engl J Med 2011 Feb;364(6):586-8

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http://dx.doi.org/10.1056/NEJMc1012485DOI Listing
February 2011

MT-SP1 proteolysis and regulation of cell-microenvironment interactions.

Front Biosci 2008 Jan 1;13:528-39. Epub 2008 Jan 1.

Graduate Program in Biophysics, University of California, San Francisco, USA.

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http://dx.doi.org/10.2741/2698DOI Listing
January 2008

Coordinate expression and functional profiling identify an extracellular proteolytic signaling pathway.

Proc Natl Acad Sci U S A 2007 Apr 27;104(14):5771-6. Epub 2007 Mar 27.

Department of Pharmaceutical Chemistry, University of California, 600 16th Street, San Francisco, CA 94158, USA.

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http://dx.doi.org/10.1073/pnas.0606514104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1838401PMC
April 2007

Adhesion signaling by a novel mitotic substrate of src kinases.

Oncogene 2005 Aug;24(34):5333-43

School of Medicine, University of California, San Francisco, CA 94143, USA.

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http://www.nature.com/articles/1208582
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http://dx.doi.org/10.1038/sj.onc.1208582DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3023961PMC
August 2005

Substrates of the prostate-specific serine protease prostase/KLK4 defined by positional-scanning peptide libraries.

Prostate 2005 Jan;62(1):1-13

Division of Human Biology, Fred Hutchinson Cancer Research Center, 1100 Fairview Ave. N, Seattle, WA 98109, USA.

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http://dx.doi.org/10.1002/pros.20101DOI Listing
January 2005

Quantitation of membrane type serine protease 1 (MT-SP1) in transformed and normal cells.

Biol Chem 2003 Feb;384(2):257-66

University of California at San Francisco, School of Medicine, 513 Parnassus Ave, Box 0454, San Francisco, CA 94143, USA.

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http://dx.doi.org/10.1515/BC.2003.029DOI Listing
February 2003