Amanda B Hummon

Amanda B Hummon

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Amanda B Hummon

Publications by authors named "Amanda B Hummon"

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Quantitative evaluation of liposomal doxorubicin and its metabolites in spheroids.

Anal Bioanal Chem 2019 Aug 30. Epub 2019 Aug 30.

Department of Chemistry and Biochemistry and the Comprehensive Cancer Center, The Ohio State University, 100 West 18th Ave, Columbus, OH, 43210, USA.

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http://dx.doi.org/10.1007/s00216-019-02084-7DOI Listing
August 2019

MALDI-MSI of Immunotherapy: Mapping the EGFR-Targeting Antibody Cetuximab in 3D Colon-Cancer Cell Cultures.

Anal Chem 2018 12 7;90(24):14156-14164. Epub 2018 Dec 7.

Department of Chemistry and Biochemistry and Comprehensive Cancer Center , The Ohio State University , 414 Biomedical Research Tower , Columbus , Ohio 43210 , United States.

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http://dx.doi.org/10.1021/acs.analchem.8b02151DOI Listing
December 2018

Electronic Cigarettes and the Lung Proteome.

Am J Respir Crit Care Med 2018 11;198(10):1350-1351

1 The Ohio State University Comprehensive Cancer Center Columbus, Ohio.

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https://www.atsjournals.org/doi/10.1164/rccm.201806-1151LE
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http://dx.doi.org/10.1164/rccm.201806-1151LEDOI Listing
November 2018

Employing proteomics to understand the effects of nutritional intervention in cancer treatment.

Anal Bioanal Chem 2018 Oct 4;410(25):6371-6386. Epub 2018 Jul 4.

Department of Chemistry and Biochemistry, Comprehensive Cancer Center, The Ohio State University, Columbus, OH, 43210, USA.

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http://dx.doi.org/10.1007/s00216-018-1219-zDOI Listing
October 2018

Combined Short-Term Glucose Starvation and Chemotherapy in 3D Colorectal Cancer Cell Culture Decreases 14-3-3 Family Protein Expression and Phenotypic Response to Therapy.

J Am Soc Mass Spectrom 2018 Oct 17;29(10):2012-2022. Epub 2018 Jul 17.

Department of Chemistry and Biochemistry, Comprehensive Cancer Center, The Ohio State University, 414 Biomedical Research Tower, Columbus, OH, 43201, USA.

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http://dx.doi.org/10.1007/s13361-018-2013-zDOI Listing
October 2018

Comparison of In-Solution, FASP, and S-Trap Based Digestion Methods for Bottom-Up Proteomic Studies.

J Proteome Res 2018 07 24;17(7):2480-2490. Epub 2018 May 24.

Department of Chemistry and Biochemistry and the Comprehensive Cancer Center , The Ohio State University , Columbus , Ohio 43210 , United States.

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http://dx.doi.org/10.1021/acs.jproteome.8b00235DOI Listing
July 2018

MALDI Mass Spectrometry Imaging for Evaluation of Therapeutics in Colorectal Tumor Organoids.

J Am Soc Mass Spectrom 2018 03 5;29(3):516-526. Epub 2017 Dec 5.

Department of Chemistry and Biochemistry and the Harper Cancer Research Institute, University of Notre Dame, 140 McCourtney Hall, Notre Dame, IN, 46556, USA.

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http://dx.doi.org/10.1007/s13361-017-1851-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5839975PMC
March 2018

Quantitative proteomic analysis of murine white adipose tissue for peritoneal cancer metastasis.

Anal Bioanal Chem 2018 Feb 27;410(5):1583-1594. Epub 2017 Dec 27.

Department of Chemistry and Biochemistry, Harper Cancer Research Institute, University of Notre Dame, 251 140B McCourtney Hall, Notre Dame, IN, 46556, USA.

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http://dx.doi.org/10.1007/s00216-017-0813-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5790596PMC
February 2018

iTRAQ Quantitative Proteomic Profiling and MALDI-MSI of Colon Cancer Spheroids Treated with Combination Chemotherapies in a 3D Printed Fluidic Device.

Anal Chem 2018 01 21;90(2):1423-1430. Epub 2017 Dec 21.

Department of Chemistry and Biochemistry and ‡Harper Cancer Research Institute, University of Notre Dame , Notre Dame, Indiana 46556, United States.

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http://dx.doi.org/10.1021/acs.analchem.7b04969DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5820028PMC
January 2018

Calcitriol Supplementation Causes Decreases in Tumorigenic Proteins and Different Proteomic and Metabolomic Signatures in Right versus Left-Sided Colon Cancer.

Metabolites 2018 Jan 11;8(1). Epub 2018 Jan 11.

Department of Chemistry and Biochemistry, Harper Cancer Research Institute, University of Notre Dame, Notre Dame, IN 46556, USA.

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http://www.mdpi.com/2218-1989/8/1/5
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http://dx.doi.org/10.3390/metabo8010005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5875995PMC
January 2018

Magnetic bead-based peptide extraction methodology for tissue imaging.

Analyst 2017 Dec;143(1):133-140

Department of Chemistry and Biochemistry, Harper Cancer Research Institute, University of Notre Dame, Notre Dame, IN 46556, USA.

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http://dx.doi.org/10.1039/c7an00757dDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5734995PMC
December 2017

Discovery of leucokinin-like neuropeptides that modulate a specific parameter of feeding motor programs in the molluscan model, .

J Biol Chem 2017 11 18;292(46):18775-18789. Epub 2017 Sep 18.

From the State Key Laboratory of Pharmaceutical Biotechnology, Collaborative Innovation Center of Chemistry for Life Sciences, Jiangsu Engineering Research Center for MicroRNA Biology and Biotechnology, Advanced Institute for Life Sciences, School of Life Sciences, Nanjing University, Nanjing, Jiangsu 210023, China,

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http://dx.doi.org/10.1074/jbc.M117.795450DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5704463PMC
November 2017

Chemical Analysis of Morphological Changes in Lysophosphatidic Acid-Treated Ovarian Cancer Cells.

Sci Rep 2017 11 10;7(1):15295. Epub 2017 Nov 10.

Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN, 46556, USA.

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http://dx.doi.org/10.1038/s41598-017-15547-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5681516PMC
November 2017

Glucose Restriction Combined with Autophagy Inhibition and Chemotherapy in HCT 116 Spheroids Decreases Cell Clonogenicity and Viability Regulated by Tumor Suppressor Genes.

J Proteome Res 2017 08 3;16(8):3009-3018. Epub 2017 Jul 3.

Department of Chemistry and Biochemistry, University of Notre Dame , Notre Dame, Indiana 46556, United States.

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http://dx.doi.org/10.1021/acs.jproteome.7b00293DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5557650PMC
August 2017

Analyzing Liposomal Drug Delivery Systems in Three-Dimensional Cell Culture Models Using MALDI Imaging Mass Spectrometry.

Anal Chem 2017 08 4;89(16):8453-8458. Epub 2017 Aug 4.

Department of Chemistry and Biochemistry, Harper Cancer Research Institute, University of Notre Dame , 152 McCourtney Hall, Notre Dame, Indiana 46556, United States.

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http://dx.doi.org/10.1021/acs.analchem.7b02006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5567673PMC
August 2017

Assessing chemotherapeutic effectiveness using a paper-based tumor model.

Analyst 2017 Jul;142(15):2819-2827

Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA and Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.

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http://dx.doi.org/10.1039/c7an00806fDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5557652PMC
July 2017

Phosphoproteomics of colon cancer metastasis: comparative mass spectrometric analysis of the isogenic primary and metastatic cell lines SW480 and SW620.

Anal Bioanal Chem 2017 Mar 16;409(7):1749-1763. Epub 2016 Dec 16.

Department of Chemistry and Biochemistry, Harper Cancer Research Institute, University of Notre Dame, 251 Nieuwland Science Hall, Notre Dame, IN, 46556, USA.

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http://dx.doi.org/10.1007/s00216-016-0125-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5303640PMC
March 2017

Multicellular Tumor Spheroids Combined with Mass Spectrometric Histone Analysis To Evaluate Epigenetic Drugs.

Anal Chem 2017 03 21;89(5):2773-2781. Epub 2017 Feb 21.

Department of Chemistry and Biochemistry and the Harper Cancer Research Institute, University of Notre Dame , Notre Dame, Indiana 46656, United States.

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http://dx.doi.org/10.1021/acs.analchem.6b03602DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5371507PMC
March 2017

Mass spectrometry for the discovery of biomarkers of sepsis.

Mol Biosyst 2017 Mar;13(4):648-664

Department of Chemistry and Biochemistry and the Harper Cancer Research Institute, University of Notre Dame, Notre Dame, IN, USA.

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http://dx.doi.org/10.1039/c6mb00656fDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5373965PMC
March 2017

Quantitative Proteomic and Phosphoproteomic Comparison of 2D and 3D Colon Cancer Cell Culture Models.

J Proteome Res 2016 12 10;15(12):4265-4276. Epub 2016 Oct 10.

Department of Chemistry and Biochemistry and the Harper Cancer Research Institute, University of Notre Dame , 251 Nieuwland Science Hall, Notre Dame, Indiana 46556, United States.

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http://dx.doi.org/10.1021/acs.jproteome.6b00342DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5334570PMC
December 2016

Chemical Imaging of Platinum-Based Drugs and their Metabolites.

Sci Rep 2016 12 5;6:38507. Epub 2016 Dec 5.

Department of Chemistry and Biochemistry Harper Cancer Research Institute University of Notre Dame McCourtney Hall Notre Dame, IN 46556, USA.

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http://dx.doi.org/10.1038/srep38507DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5137023PMC
December 2016

Nutrient restriction of glucose or serum results in similar proteomic expression changes in 3D colon cancer cell cultures.

Nutr Res 2016 10 14;36(10):1068-1080. Epub 2016 Aug 14.

Department of Chemistry and Biochemistry, Harper Cancer Research Institute, University of Notre Dame. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S02715317163029
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http://dx.doi.org/10.1016/j.nutres.2016.08.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5119765PMC
October 2016

Evaluation of the mirn23a Cluster through an iTRAQ-based Quantitative Proteomic Approach.

J Proteome Res 2016 05 6;15(5):1497-505. Epub 2016 Apr 6.

Harper Cancer Research Institute, University of Notre Dame , Notre Dame, Indiana 46617 United States.

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http://dx.doi.org/10.1021/acs.jproteome.5b01101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5305806PMC
May 2016

Mass spectrometry imaging of therapeutics from animal models to three-dimensional cell cultures.

Anal Chem 2015 Oct 2;87(19):9508-19. Epub 2015 Jul 2.

Department of Chemistry and Biochemistry, Harper Cancer Research Institute, University of Notre Dame , 251 Nieuwland Science Hall, Notre Dame, Indiana 46556, United States.

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http://dx.doi.org/10.1021/acs.analchem.5b00419DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4766864PMC
October 2015

Comparing multistep immobilized metal affinity chromatography and multistep TiO2 methods for phosphopeptide enrichment.

Anal Chem 2015 Sep 11;87(17):8837-44. Epub 2015 Aug 11.

Department of Chemistry and Biochemistry and the Harper Cancer Research Institute, University of Notre Dame , 251 Nieuwland Science Hall, Notre Dame, Indiana 46556, United States.

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http://dx.doi.org/10.1021/acs.analchem.5b01833DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4766865PMC
September 2015

Chemometric analysis of MALDI mass spectrometric images of three-dimensional cell culture systems.

Anal Methods 2015 Sep 24;7(17):7208-7219. Epub 2015 Mar 24.

Chemistry Department, Roanoke College, Salem, VA.

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http://dx.doi.org/10.1039/C5AY00293ADOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4654961PMC
September 2015

Quantitative determination of irinotecan and the metabolite SN-38 by nanoflow liquid chromatography-tandem mass spectrometry in different regions of multicellular tumor spheroids.

J Am Soc Mass Spectrom 2015 Apr 21;26(4):577-86. Epub 2015 Jan 21.

Department of Chemistry and Biochemistry, Harper Cancer Research Institute, University of Notre Dame, 251 Nieuwland Science Hall, Notre Dame, IN, 46556, USA.

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http://dx.doi.org/10.1007/s13361-014-1071-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4361235PMC
April 2015

Bottom-up proteomic analysis of single HCT 116 colon carcinoma multicellular spheroids.

Rapid Commun Mass Spectrom 2015 Apr;29(7):654-8

251 Nieuwland Science Hall, Department of Chemistry and Biochemistry and the Harper Cancer Research Institute, University of Notre Dame, Notre Dame, IN, 46556, USA.

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http://dx.doi.org/10.1002/rcm.7150DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4763982PMC
April 2015

Proteomic challenges: sample preparation techniques for microgram-quantity protein analysis from biological samples.

Int J Mol Sci 2015 Feb 5;16(2):3537-63. Epub 2015 Feb 5.

Department of Chemistry and Biochemistry, Integrated Biomedical Sciences Program, and the Harper Cancer Research Institute, 251 Nieuwland Science Hall, University of Notre Dame, Notre Dame, IN 46556, USA.

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http://dx.doi.org/10.3390/ijms16023537DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4346912PMC
February 2015

Sample preparation strategies for mass spectrometry imaging of 3D cell culture models.

J Vis Exp 2014 Dec 5(94). Epub 2014 Dec 5.

Department of Chemistry and Biochemistry, University of Notre Dame; Harper Cancer Research Institute, University of Notre Dame;

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http://dx.doi.org/10.3791/52313DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4396945PMC
December 2014

Proteomic and functional investigation of the colon cancer relapse-associated genes NOX4 and ITGA3.

J Proteome Res 2014 Nov 18;13(11):4910-8. Epub 2014 Aug 18.

Harper Cancer Research Institute, ‡Department of Chemistry & Biochemistry, and §Department of Applied and Computational Mathematics and Statistics, University of Notre Dame , Notre Dame, Indiana 46556, United States.

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http://dx.doi.org/10.1021/pr500557nDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4227555PMC
November 2014

Correlated mass spectrometry imaging and confocal Raman microscopy for studies of three-dimensional cell culture sections.

Analyst 2014 Sep;139(18):4578-85

Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556, USA.

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http://dx.doi.org/10.1039/c4an00826jDOI Listing
September 2014

Comparative LC-MS/MS analysis of optimal cutting temperature (OCT) compound removal for the study of mammalian proteomes.

Analyst 2013 Nov;138(21):6380-4

Department of Chemistry and Biochemistry, University of Notre Dame, 251 Nieuwland Science Hall, Notre Dame, IN 46556, USA.

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http://dx.doi.org/10.1039/c3an01121fDOI Listing
November 2013

Selective, bead-based global peptide capture using a bifunctional cross-linker.

Anal Chem 2013 Nov 28;85(22):10675-9. Epub 2013 Oct 28.

Department of Chemistry and Biochemistry, University of Notre Dame , 251 Nieuwland Science Hall, Notre Dame, Indiana 46556, United States.

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http://dx.doi.org/10.1021/ac401825mDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4118834PMC
November 2013

Single cell metabolic profiling of tumor mimics.

Anal Chem 2013 Oct 12;85(19):8910-8. Epub 2013 Sep 12.

Department of Chemistry and Biochemistry, University of Notre Dame , Notre Dame, Indiana 46556, United States.

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http://dx.doi.org/10.1021/ac402262eDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3816011PMC
October 2013

Combination of multistep IMAC enrichment with high-pH reverse phase separation for in-depth phosphoproteomic profiling.

J Proteome Res 2013 Sep 8;12(9):4176-86. Epub 2013 Aug 8.

Department of Chemistry and Biochemistry, University of Notre Dame, 251 Nieuwland Science Hall, Notre Dame, Indiana 46556, United States.

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http://dx.doi.org/10.1021/pr4005234DOI Listing
September 2013

Comparison of bottom-up proteomic approaches for LC-MS analysis of complex proteomes.

Anal Methods 2013 Sep;5(18)

Department of Chemistry and Biochemistry, University of Notre Dame, 251 Nieuwland Science Hall, Notre Dame, IN 46556, USA.

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http://dx.doi.org/10.1039/C3AY40853ADOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3839868PMC
September 2013

Imaging mass spectrometry: from tissue sections to cell cultures.

Adv Drug Deliv Rev 2013 Jul 6;65(8):1039-55. Epub 2013 Apr 6.

Department of Chemistry & Biochemistry, University of Notre Dame, 251 Nieuwland Science Hall, Notre Dame, IN 46556, USA.

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http://dx.doi.org/10.1016/j.addr.2013.03.006DOI Listing
July 2013

Evaluation of therapeutics in three-dimensional cell culture systems by MALDI imaging mass spectrometry.

Anal Chem 2013 Jul 11;85(13):6295-302. Epub 2013 Jun 11.

University of Notre Dame, 251 Nieuwland Science Hall, Notre Dame, Indiana 46556, USA.

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http://dx.doi.org/10.1021/ac400519cDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4118837PMC
July 2013

Effects of the miR-143/-145 microRNA cluster on the colon cancer proteome and transcriptome.

J Proteome Res 2012 Sep 27;11(9):4744-54. Epub 2012 Aug 27.

Department of Chemistry and Biochemistry, University of Notre Dame, 251 Nieuwland Science Hall, Notre Dame, Indiana 46556, USA.

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http://dx.doi.org/10.1021/pr300600rDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3446753PMC
September 2012

Comparative label-free LC-MS/MS analysis of colorectal adenocarcinoma and metastatic cells treated with 5-fluorouracil.

Proteomics 2012 Jun;12(12):1928-37

Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556, USA.

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http://dx.doi.org/10.1002/pmic.201200041DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3805023PMC
June 2012

Right-side and left-side colon cancer follow different pathways to relapse.

Mol Carcinog 2012 May 7;51(5):411-21. Epub 2011 Jun 7.

Department of Chemistry & Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556, USA.

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http://dx.doi.org/10.1002/mc.20804DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4104680PMC
May 2012

Imaging mass spectrometry of three-dimensional cell culture systems.

Anal Chem 2011 Nov 25;83(22):8794-801. Epub 2011 Oct 25.

Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556, United States.

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http://dx.doi.org/10.1021/ac202356gDOI Listing
November 2011

Integrative genomics reveals mechanisms of copy number alterations responsible for transcriptional deregulation in colorectal cancer.

Genes Chromosomes Cancer 2009 Nov;48(11):1002-17

Genetics Branch, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1002/gcc.20699DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4721599PMC
November 2009

Isolation and solubilization of proteins after TRIzol extraction of RNA and DNA from patient material following prolonged storage.

Biotechniques 2007 Apr;42(4):467-70, 472

National Cancer Institute, Center for Cancer Research, National Institutes of Health, Bethesda, MD 20892, USA.

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https://www.future-science.com/doi/10.2144/000112401
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4721573PMC
http://dx.doi.org/10.2144/000112401DOI Listing
April 2007

Discovering new invertebrate neuropeptides using mass spectrometry.

Mass Spectrom Rev 2006 Jan-Feb;25(1):77-98

Department of Chemistry, University of Illinois, Urbana, Illinois 61801, USA.

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http://doi.wiley.com/10.1002/mas.20055
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http://dx.doi.org/10.1002/mas.20055DOI Listing
February 2006

From precursor to final peptides: a statistical sequence-based approach to predicting prohormone processing.

J Proteome Res 2003 Nov-Dec;2(6):650-6

Department of Chemistry and the Beckman Institute, University of Illinois, Urbana, Illinois 61801, USA.

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July 2004

Characterization of Aplysia enticin and temptin, two novel water-borne protein pheromones that act in concert with attractin to stimulate mate attraction.

J Biol Chem 2004 Jun 30;279(24):25614-22. Epub 2004 Mar 30.

Department of Neuroscience and Cell Biology, University of Texas Medical Branch, Galveston, Texas 77555, USA.

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http://www.jbc.org/lookup/doi/10.1074/jbc.M313585200
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http://dx.doi.org/10.1074/jbc.M313585200DOI Listing
June 2004

The chemistry of thought: neurotransmitters in the brain.

Anal Chem 2004 Apr;76(7):121A-128A

University of Illinois, IL, USA.

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April 2004

A novel prohormone processing site in Aplysia californica: the Leu-Leu rule.

J Neurochem 2002 Sep;82(6):1398-405

Department of Chemistry and the Beckman Institute, University of Illinois, Urbana, Illinois 61801, USA.

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http://dx.doi.org/10.1046/j.1471-4159.2002.01070.xDOI Listing
September 2002