Alisa Yurovsky

Alisa Yurovsky

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Alisa Yurovsky

Alisa Yurovsky

Publications by authors named "Alisa Yurovsky"

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11Publications

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Re-annotation of 12,495 prokaryotic 16S rRNA 3' ends and analysis of Shine-Dalgarno and anti-Shine-Dalgarno sequences.

PLoS One 2018 23;13(8):e0202767. Epub 2018 Aug 23.

Dept. of Molecular Genetics and Microbiology, Stony Brook University, Stony Brook, NY, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0202767PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6107228PMC
February 2019

Prokaryotic coding regions have little if any specific depletion of Shine-Dalgarno motifs.

PLoS One 2018 23;13(8):e0202768. Epub 2018 Aug 23.

Dept. of Molecular Genetics and Microbiology, Stony Brook University, Stony Brook, New York City, New York, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0202768PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6107199PMC
February 2019

Population Variation and Genetic Control of Modular Chromatin Architecture in Humans.

Cell 2015 Aug 20;162(5):1039-50. Epub 2015 Aug 20.

Swiss Institute of Bioinformatics, Lausanne 1015, Switzerland; Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva 1211, Switzerland; Institute of Genetics and Genomics in Geneva, University of Geneva, Geneva 1211, Switzerland. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2015.08.001DOI Listing
August 2015

Reply to Simmonds et al.: Codon pair and dinucleotide bias have not been functionally distinguished.

Proc Natl Acad Sci U S A 2015 Jul 12;112(28):E3635-6. Epub 2015 Jun 12.

Department of Molecular Genetics and Microbiology, Stony Brook University School of Medicine, Stony Brook, NY 11794

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http://dx.doi.org/10.1073/pnas.1507710112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4507201PMC
July 2015

Tissue-specific effects of genetic and epigenetic variation on gene regulation and splicing.

PLoS Genet 2015 Jan 29;11(1):e1004958. Epub 2015 Jan 29.

Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland; Institute of Genetics and Genomics in Geneva (iGE3), Geneva, Switzerland; Swiss Institute of Bioinformatics (SIB), Geneva, Switzerland; Center of Excellence in Genomic Medicine Research, KingAbdulaziz University, Jeddah, Saudi Arabia.

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http://dx.doi.org/10.1371/journal.pgen.1004958DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4310612PMC
January 2015

Measurement of average decoding rates of the 61 sense codons in vivo.

Elife 2014 Oct 27;3. Epub 2014 Oct 27.

Department of Molecular Genetics and Microbiology, Stony Brook University, Stony Brook, United States.

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http://dx.doi.org/10.7554/eLife.03735DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4371865PMC
October 2014

Identification and removal of low-complexity sites in allele-specific analysis of ChIP-seq data.

Bioinformatics 2014 Jan 18;30(2):165-71. Epub 2013 Nov 18.

Institute of Bioengineering, School of Life Sciences, École Polytechnique Fédérale de Lausanne, Swiss Institute of Bioinformatics, 1015, Lausanne, Switzerland, Department of Genetic Medicine and Development, University of Geneva Medical School, Institute of Genetics and Genomics in Geneva, University of Geneva, 1211, Geneva, Switzerland and Center for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, 1011, Lausanne, Switzerland.

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http://dx.doi.org/10.1093/bioinformatics/btt667DOI Listing
January 2014

Passive and active DNA methylation and the interplay with genetic variation in gene regulation.

Elife 2013 Jun 4;2:e00523. Epub 2013 Jun 4.

Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland; Institute of Genetics and Genomics in Geneva, Geneva, Switzerland [corrected]; Swiss Institute of Bioinformatics, Geneva, Switzerland.

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http://dx.doi.org/10.7554/eLife.00523DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3673336PMC
June 2013

FluReF, an automated flu virus reassortment finder based on phylogenetic trees.

BMC Genomics 2011 27;12 Suppl 2:S3. Epub 2011 Jul 27.

Department of Computer Science, EPFL (Swiss Federal Institute of Technology), Lausanne, CH-1015, Switzerland.

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http://dx.doi.org/10.1186/1471-2164-12-S2-S3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3194234PMC
January 2012