Alicia Clum

Metagenomes and Metatranscriptomes of a Glucose-Amended Agricultural Soil.

Microbiol Resour Announc 2020 Oct 29;9(44). Epub 2020 Oct 29.

Center for Ecosystem Science and Society, Northern Arizona University, Flagstaff, Arizona, USA.

October 2020

Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits.

Authors:

Shingo Miyauchi Enikő Kiss Alan Kuo Elodie Drula Annegret Kohler Marisol Sánchez-García Emmanuelle Morin Bill Andreopoulos Kerrie W Barry Gregory Bonito Marc Buée Akiko Carver Cindy Chen Nicolas Cichocki Alicia Clum David Culley Pedro W Crous Laure Fauchery Mariangela Girlanda Richard D Hayes Zsófia Kéri Kurt LaButti Anna Lipzen Vincent Lombard Jon Magnuson François Maillard Claude Murat Matt Nolan Robin A Ohm Jasmyn Pangilinan Maíra de Freitas Pereira Silvia Perotto Martina Peter Stephanie Pfister Robert Riley Yaron Sitrit J Benjamin Stielow Gergely Szöllősi Lucia Žifčáková Martina Štursová Joseph W Spatafora Leho Tedersoo Lu-Min Vaario Akiyoshi Yamada Mi Yan Pengfei Wang Jianping Xu Tom Bruns Petr Baldrian Rytas Vilgalys Christophe Dunand Bernard Henrissat Igor V Grigoriev David Hibbett László G Nagy Francis M Martin

Nat Commun 2020 10 12;11(1):5125. Epub 2020 Oct 12.

Université de Lorraine, Institut national de recherche pour l'agriculture, l'alimentation et l' environnement, UMR Interactions Arbres/Microorganismes, Centre INRAE Grand Est-Nancy, 54280, Champenoux, France.

View Article and Find Full Text PDF

October 2020

Metagenomes from Experimental Hydrologic Manipulation of Restored Coastal Plain Wetland Soils (Tyrell County, North Carolina).

Authors:

Ariane L Peralta Regina B Bledsoe Mario E Muscarella Marcel Huntemann Alicia Clum Brian Foster Bryce Foster Simon Roux Krishnaveni Palaniappan Neha Varghese Supratim Mukherjee T B K Reddy Chris Daum Alex Copeland I-Min A Chen Natalia N Ivanova Nikos C Kyrpides Tijana Glavina Del Rio Emiley A Eloe-Fadrosh

Microbiol Resour Announc 2020 Oct 8;9(41). Epub 2020 Oct 8.

Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA.

View Article and Find Full Text PDF

October 2020

Molecular Dialogues between Early Divergent Fungi and Bacteria in an Antagonism versus a Mutualism.

Authors:

Olga A Lastovetsky Lev D Krasnovsky Xiaotian Qin Maria L Gaspar Andrii P Gryganskyi Marcel Huntemann Alicia Clum Manoj Pillay Krishnaveni Palaniappan Neha Varghese Natalia Mikhailova Dimitrios Stamatis T B K Reddy Chris Daum Nicole Shapiro Natalia Ivanova Nikos Kyrpides Tanja Woyke Teresa E Pawlowska

mBio 2020 09 8;11(5). Epub 2020 Sep 8.

School of Integrative Plant Science, Plant Pathology & Plant-Microbe Biology, Cornell University, Ithaca, New York, USA

View Article and Find Full Text PDF

September 2020

Terabase-scale metagenome coassembly with MetaHipMer.

Authors:

Steven Hofmeyr Rob Egan Evangelos Georganas Alex C Copeland Robert Riley Alicia Clum Emiley Eloe-Fadrosh Simon Roux Eugene Goltsman Aydın Buluç Daniel Rokhsar Leonid Oliker Katherine Yelick

Sci Rep 2020 07 1;10(1):10689. Epub 2020 Jul 1.

Computational Research Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.

View Article and Find Full Text PDF

July 2020

Draft Genome Sequence of Yokenella regensburgei Strain WCD67, Isolated from the Boxelder Bug.

Authors:

Desiree J Meyers Brittany A Leigh Marcel Huntemann Alicia Clum Stephan Ritter Krishnaveni Palaniappan I-Min Chen Dimitrios Stamatis T B K Reddy Ronan O'Malley Chris Daum Nicole Shapiro Natalia Ivanova Nikos C Kyrpides Tanja Woyke William B Whitman

Microbiol Resour Announc 2020 Apr 9;9(15). Epub 2020 Apr 9.

University of Georgia, Department of Microbiology, Athens, Georgia, USA.

View Article and Find Full Text PDF

April 2020

A comparative genomics study of 23 Aspergillus species from section Flavi.

Nat Commun 2020 02 27;11(1):1106. Epub 2020 Feb 27.

Department of Biotechnology and Bioengineering, Technical University of Denmark, Søltoft Plads 223, 2800, Kongens Lyngby, Denmark.

View Article and Find Full Text PDF

February 2020

One Complete and Seven Draft Genome Sequences of Subdivision 1 and 3 Isolated from Soil.

Authors:

Stephanie A Eichorst Daniela Trojan Marcel Huntemann Alicia Clum Manoj Pillay Krishnaveni Palaniappan Neha Varghese Natalia Mikhailova Dimitrios Stamatis T B K Reddy Chris Daum Lynne A Goodwin Nicole Shapiro Natalia Ivanova Nikos Kyrpides Tanja Woyke Dagmar Woebken

Microbiol Resour Announc 2020 Jan 30;9(5). Epub 2020 Jan 30.

Division of Microbial Ecology, Department of Microbiology and Ecosystem Science, Centre for Microbiology and Environmental Systems Science, University of Vienna, Vienna, Austria.

View Article and Find Full Text PDF

January 2020

Metatranscriptomic Sequencing of a Cyanobacterial Soil-Surface Consortium with and without a Diverse Underlying Soil Microbiome.

Authors:

Terrence H Bell Ryan V Trexler Xin Peng Marcel Huntemann Alicia Clum Brian Foster Bryce Foster Simon Roux Krishnaveni Palaniappan Neha Varghese Supratim Mukherjee T B K Reddy Chris Daum Alex Copeland Natalia N Ivanova Nikos C Kyrpides Christa Pennacchio Emiley A Eloe-Fadrosh Mary Ann Bruns

Microbiol Resour Announc 2020 Jan 2;9(1). Epub 2020 Jan 2.

Intercollege Graduate Degree Program in Ecology, Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, Pennsylvania, USA.

View Article and Find Full Text PDF

January 2020

Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies.

Sci Data 2019 11 26;6(1):285. Epub 2019 Nov 26.

DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.

View Article and Find Full Text PDF

November 2019

Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials.

Sci Data 2019 10 16;6(1):207. Epub 2019 Oct 16.

Centre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Kalmar, 59231, Sweden.

View Article and Find Full Text PDF

October 2019

Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot.

Sci Data 2019 07 31;6(1):140. Epub 2019 Jul 31.

Departamento de Biologia Vegetal, Instituto de Biologia, Universidade Estadual de Campinas (UNICAMP), 13083-862, Campinas, SP, Brazil.

View Article and Find Full Text PDF

July 2019

Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom.

Sci Data 2019 07 22;6(1):129. Epub 2019 Jul 22.

Department of Marine Sciences, University of Georgia, Athens, GA, 30602, USA.

View Article and Find Full Text PDF

July 2019

Complete Genome Sequence of Serratia quinivorans Strain 124R, a Facultative Anaerobe Isolated on Organosolv Lignin as a Sole Carbon Source.

Microbiol Resour Announc 2019 May 2;8(18). Epub 2019 May 2.

Department of Microbiology, University of Massachusetts, Amherst, Amherst, Massachusetts, USA

View Article and Find Full Text PDF

May 2019

Complete Genome Sequence for sp. Strain OR53 and Draft Genome Sequence for sp. Strain OR43, Two Bacteria Tolerant to Uranium.

Authors:

Ryann M Brzoska Marcel Huntemann Alicia Clum Amy Chen Nikos Kyrpides Krishnaveni Palaniappan Natalia Ivanova Natalia Mikhailova Galina Ovchinnikova Neha Varghese Supratim Mukherjee T B K Reddy Chris Daum Nicole Shapiro Tanja Woyke Annette Bollmann

Microbiol Resour Announc 2019 Apr 4;8(14). Epub 2019 Apr 4.

Department of Microbiology, Miami University, Oxford, Ohio, USA

View Article and Find Full Text PDF

April 2019

Draft Genome of Burkholderia cenocepacia TAtl-371, a Strain from the Burkholderia cepacia Complex Retains Antagonism in Different Carbon and Nitrogen Sources.

Curr Microbiol 2019 May 28;76(5):566-574. Epub 2019 Feb 28.

Instituto Politécnico Nacional, Escuela Nacional de Ciencias Biológicas, Prol. Carpio y Plan de Ayala s/n. Col. Santo Tomás, Del. Miguel Hidalgo, C.P. 11340, Ciudad de México, Mexico.

View Article and Find Full Text PDF

May 2019

High-Quality Draft Genome Sequences of Eight Bacteria Isolated from Fungus Gardens Grown by Trachymyrmex septentrionalis Ants.

Authors:

Sarah Kopac Hannah Beatty Philip Gialopsos Marcel Huntemann Alicia Clum Alexander Spunde Manoj Pillay Krishnaveni Palaniappan Neha Varghese Natalia Mikhailova Dimitrios Stamatis T B K Reddy Chris Daum Vivian Ng Natalia Ivanova Nikos Kyrpides Tanja Woyke Jonathan L Klassen

Microbiol Resour Announc 2018 Jul 19;7(2). Epub 2018 Jul 19.

Department of Molecular and Cell Biology, University of Connecticut, Storrs, Connecticut, USA.

View Article and Find Full Text PDF

July 2018

Draft Genome Sequences of New Isolates and the Known Species of the Family Microbacteriaceae Associated with Plants.

Microbiol Resour Announc 2018 Sep 20;7(11). Epub 2018 Sep 20.

All-Russian Collection of Microorganisms (VKM), G. K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, Pushchino, Russia.

View Article and Find Full Text PDF

September 2018

Phylogenomics of Endogonaceae and evolution of mycorrhizas within Mucoromycota.

Authors:

Ying Chang Alessandro Desirò Hyunsoo Na Laura Sandor Anna Lipzen Alicia Clum Kerrie Barry Igor V Grigoriev Francis M Martin Jason E Stajich Matthew E Smith Gregory Bonito Joseph W Spatafora

New Phytol 2019 04 12;222(1):511-525. Epub 2019 Jan 12.

Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, 97331, USA.

View Article and Find Full Text PDF

April 2019

Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle.

Nat Ecol Evol 2018 12 12;2(12):1956-1965. Epub 2018 Nov 12.

Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 INRA-Université de Lorraine, Interactions Arbres/Microorganismes, Centre INRA-Grand Est-Nancy, Champenoux, France.

View Article and Find Full Text PDF

December 2018