Alexey V Antonov

Alexey V Antonov

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Alexey V Antonov

Alexey V Antonov

Publications by authors named "Alexey V Antonov"

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Molecular mechanisms of cell death: recommendations of the Nomenclature Committee on Cell Death 2018.

Authors:
Lorenzo Galluzzi Ilio Vitale Stuart A Aaronson John M Abrams Dieter Adam Patrizia Agostinis Emad S Alnemri Lucia Altucci Ivano Amelio David W Andrews Margherita Annicchiarico-Petruzzelli Alexey V Antonov Eli Arama Eric H Baehrecke Nickolai A Barlev Nicolas G Bazan Francesca Bernassola Mathieu J M Bertrand Katiuscia Bianchi Mikhail V Blagosklonny Klas Blomgren Christoph Borner Patricia Boya Catherine Brenner Michelangelo Campanella Eleonora Candi Didac Carmona-Gutierrez Francesco Cecconi Francis K-M Chan Navdeep S Chandel Emily H Cheng Jerry E Chipuk John A Cidlowski Aaron Ciechanover Gerald M Cohen Marcus Conrad Juan R Cubillos-Ruiz Peter E Czabotar Vincenzo D'Angiolella Ted M Dawson Valina L Dawson Vincenzo De Laurenzi Ruggero De Maria Klaus-Michael Debatin Ralph J DeBerardinis Mohanish Deshmukh Nicola Di Daniele Francesco Di Virgilio Vishva M Dixit Scott J Dixon Colin S Duckett Brian D Dynlacht Wafik S El-Deiry John W Elrod Gian Maria Fimia Simone Fulda Ana J García-Sáez Abhishek D Garg Carmen Garrido Evripidis Gavathiotis Pierre Golstein Eyal Gottlieb Douglas R Green Lloyd A Greene Hinrich Gronemeyer Atan Gross Gyorgy Hajnoczky J Marie Hardwick Isaac S Harris Michael O Hengartner Claudio Hetz Hidenori Ichijo Marja Jäättelä Bertrand Joseph Philipp J Jost Philippe P Juin William J Kaiser Michael Karin Thomas Kaufmann Oliver Kepp Adi Kimchi Richard N Kitsis Daniel J Klionsky Richard A Knight Sharad Kumar Sam W Lee John J Lemasters Beth Levine Andreas Linkermann Stuart A Lipton Richard A Lockshin Carlos López-Otín Scott W Lowe Tom Luedde Enrico Lugli Marion MacFarlane Frank Madeo Michal Malewicz Walter Malorni Gwenola Manic Jean-Christophe Marine Seamus J Martin Jean-Claude Martinou Jan Paul Medema Patrick Mehlen Pascal Meier Sonia Melino Edward A Miao Jeffery D Molkentin Ute M Moll Cristina Muñoz-Pinedo Shigekazu Nagata Gabriel Nuñez Andrew Oberst Moshe Oren Michael Overholtzer Michele Pagano Theocharis Panaretakis Manolis Pasparakis Josef M Penninger David M Pereira Shazib Pervaiz Marcus E Peter Mauro Piacentini Paolo Pinton Jochen H M Prehn Hamsa Puthalakath Gabriel A Rabinovich Markus Rehm Rosario Rizzuto Cecilia M P Rodrigues David C Rubinsztein Thomas Rudel Kevin M Ryan Emre Sayan Luca Scorrano Feng Shao Yufang Shi John Silke Hans-Uwe Simon Antonella Sistigu Brent R Stockwell Andreas Strasser Gyorgy Szabadkai Stephen W G Tait Daolin Tang Nektarios Tavernarakis Andrew Thorburn Yoshihide Tsujimoto Boris Turk Tom Vanden Berghe Peter Vandenabeele Matthew G Vander Heiden Andreas Villunger Herbert W Virgin Karen H Vousden Domagoj Vucic Erwin F Wagner Henning Walczak David Wallach Ying Wang James A Wells Will Wood Junying Yuan Zahra Zakeri Boris Zhivotovsky Laurence Zitvogel Gerry Melino Guido Kroemer

Cell Death Differ 2018 03 23;25(3):486-541. Epub 2018 Jan 23.

Paris Descartes/Paris V University, Paris, France.

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http://dx.doi.org/10.1038/s41418-017-0012-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5864239PMC
March 2018

Polypharmacology of Approved Anticancer Drugs.

Curr Drug Targets 2017 ;18(5):534-543

Medical Research Council Toxicology Unit, Leicester LE1 9HN, United Kingdom.

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http://dx.doi.org/10.2174/1389450117666160301095233DOI Listing
September 2017

Perspective on multi-target antiplatelet therapies: high content phenotypic screening as an unbiased source of novel polypharmacological strategies.

Mini Rev Med Chem 2015 ;15(8):622-9

MRC Toxicology Unit, Hodgkin Building, Leicester University, Lancaster Road, P.O. Box 138, Leicester LE1 9HN, UK.

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http://dx.doi.org/10.2174/1389557515666150219124018DOI Listing
January 2016

Exploration of individuality in drug metabolism by high-throughput metabolomics: The fast line for personalized medicine.

Drug Discov Today 2016 Jan 26;21(1):103-110. Epub 2015 Jul 26.

Medical Research Council, Toxicology Unit, Leicester, UK. Electronic address:

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http://dx.doi.org/10.1016/j.drudis.2015.07.011DOI Listing
January 2016

AERS spider: an online interactive tool to mine statistical associations in Adverse Event Reporting System.

Pharmacoepidemiol Drug Saf 2014 Aug 12;23(8):795-801. Epub 2014 Feb 12.

Helmholtz Zentrum München GmbH, Department of Scientific Computing, Neuherberg, Germany.

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http://dx.doi.org/10.1002/pds.3561DOI Listing
August 2014

BioProfiling.de: analytical web portal for high-throughput cell biology.

Authors:
Alexey V Antonov

Nucleic Acids Res 2011 Jul 23;39(Web Server issue):W323-7. Epub 2011 May 23.

Helmholtz Zentrum München, Institute for Bioinformatics and Systems Biology, Ingolstädter Landstraße 1, D-85764 Neuherberg, Germany.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkr372DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125774PMC
July 2011

R spider: a network-based analysis of gene lists by combining signaling and metabolic pathways from Reactome and KEGG databases.

Nucleic Acids Res 2010 Jul 2;38(Web Server issue):W78-83. Epub 2010 Jun 2.

Helmholtz Zentrum München-German Research Center for Environmental Health (GmbH), Institute for Bioinformatics and Systems Biology, Ingolstädter Landstrasse 1, D-85764 Neuherberg, Germany.

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http://dx.doi.org/10.1093/nar/gkq482DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896180PMC
July 2010

CCancer: a bird's eye view on gene lists reported in cancer-related studies.

Nucleic Acids Res 2010 Jul 6;38(Web Server issue):W118-23. Epub 2010 Jun 6.

Freiburg Center for Data Analysis and Modeling, University of Freiburg, Eckerstr. 1, D-79104 Freiburg, Germany.

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http://dx.doi.org/10.1093/nar/gkq515DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896190PMC
July 2010

Mining protein lists from proteomics studies: applications for drug discovery.

Authors:
Alexey V Antonov

Expert Opin Drug Discov 2010 Apr;5(4):323-31

Institute for Bioinformatics and Systems Biology, Helmholtz Zentrum München - German Research Center for Environmental Health (GmbH), Ingolstädter Landstraße 1, D-85764, Neuherberg, Germany +49 89 3187 2788 ; +49 89 3187 3585 ;

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http://www.tandfonline.com/doi/full/10.1517/1746044100371679
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http://dx.doi.org/10.1517/17460441003716796DOI Listing
April 2010

GeneSet2miRNA: finding the signature of cooperative miRNA activities in the gene lists.

Nucleic Acids Res 2009 Jul 6;37(Web Server issue):W323-8. Epub 2009 May 6.

Helmholtz Zentrum München - German Research Center for Environmental Health (GmbH), Institute for Bioinformatics and Systems Biology, Ingolstädter Landstrasse 1, D-85764 Neuherberg, Germany.

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http://dx.doi.org/10.1093/nar/gkp313DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2703952PMC
July 2009

PPI spider: a tool for the interpretation of proteomics data in the context of protein-protein interaction networks.

Proteomics 2009 May;9(10):2740-9

GSF National Research Center for Environment and Health, Institute for Bioinformatics, Ingolstädter Landstrasse 1, Neuherberg, Germany.

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http://dx.doi.org/10.1002/pmic.200800612DOI Listing
May 2009

TICL--a web tool for network-based interpretation of compound lists inferred by high-throughput metabolomics.

FEBS J 2009 Apr;276(7):2084-94

Helmholtz Zentrum München, Institute for Bioinformatics and Systems Biology, Neuherberg, Germany.

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http://dx.doi.org/10.1111/j.1742-4658.2009.06943.xDOI Listing
April 2009

KEGG spider: interpretation of genomics data in the context of the global gene metabolic network.

Genome Biol 2008 18;9(12):R179. Epub 2008 Dec 18.

GSF National Research Centre for Environment and Health, Institute for Bioinformatics, Ingolstädter Landstrasse 1, D-85764 Neuherberg, Germany.

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http://dx.doi.org/10.1186/gb-2008-9-12-r179DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2646283PMC
March 2009

PLIPS, an automatically collected database of protein lists reported by proteomics studies.

J Proteome Res 2009 Mar;8(3):1193-7

Helmholtz Zentrum München-German Research Center for Environmental Health (GmbH), Institute for Bioinformatics and System Biology, Ingolstadter Landstrasse 1, D-85764 Neuherberg, Germany.

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http://dx.doi.org/10.1021/pr800804dDOI Listing
March 2009

Complex phylogenetic profiling reveals fundamental genotype-phenotype associations.

Comput Biol Chem 2008 Dec 10;32(6):412-6. Epub 2008 Jul 10.

GSF National Research Center for Environment and Health, Institute for Bioinformatics, Neuherberg, Germany.

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http://dx.doi.org/10.1016/j.compbiolchem.2008.07.003DOI Listing
December 2008

ProfCom: a web tool for profiling the complex functionality of gene groups identified from high-throughput data.

Nucleic Acids Res 2008 Jul 6;36(Web Server issue):W347-51. Epub 2008 May 6.

Helmholtz Zentrum Munich, National Research Center for Environment and Health, Institute for Bioinformatics, Ingolstädter Landstrasse 1, D-85764 Neuherberg, Germany.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkn239DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447768PMC
July 2008

Complex functionality of gene groups identified from high-throughput data.

J Mol Biol 2006 Oct 29;363(1):289-96. Epub 2006 Jul 29.

GSF National Research Center for Environment and Health, Institute for Bioinformatics, Ingolstädter Landstrasse 1, D-85764 Neuherberg, Germany.

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http://linkinghub.elsevier.com/retrieve/pii/S002228360600940
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http://dx.doi.org/10.1016/j.jmb.2006.07.062DOI Listing
October 2006

BIOREL: the benchmark resource to estimate the relevance of the gene networks.

FEBS Lett 2006 Feb 18;580(3):844-8. Epub 2006 Jan 18.

GSF National Research Center for Environment and Health, Institute for Bioinformatics, Ingolstädter Landstrasse 1, D-85764 Neuherberg, Germany.

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http://doi.wiley.com/10.1016/j.febslet.2005.12.101
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http://dx.doi.org/10.1016/j.febslet.2005.12.101DOI Listing
February 2006

A systematic approach to infer biological relevance and biases of gene network structures.

Nucleic Acids Res 2006 Jan 10;34(1):e6. Epub 2006 Jan 10.

GSF National Research Center for Environment and Health, Institute for Bioinformatics, Ingolstädter Landstrasse 1, D-85764 Neuherberg, Germany.

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http://dx.doi.org/10.1093/nar/gnj002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1326251PMC
January 2006

Exploiting scale-free information from expression data for cancer classification.

Comput Biol Chem 2005 Aug;29(4):288-93

GSF National Research Center for Environment and Health, Institute for Bioinformatics, Ingolstädter Landstrasse 1, D-85764 Neuherberg, Germany.

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http://dx.doi.org/10.1016/j.compbiolchem.2005.06.004DOI Listing
August 2005

MIPS bacterial genomes functional annotation benchmark dataset.

Bioinformatics 2005 May 15;21(10):2520-1. Epub 2005 Mar 15.

Institute for Bioinformatics (MIPS), GSF National Research Center for Environment and Health, Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany.

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http://dx.doi.org/10.1093/bioinformatics/bti380DOI Listing
May 2005

A web portal for classification of expression data using maximal margin linear programming.

Bioinformatics 2004 Nov 24;20(17):3284-5. Epub 2004 Jun 24.

GSF National Research Center for Environment and Health, Institute for Bioinformatics, Ingolstädter Landstrasse 1, D-85764 Neuherberg, Germany.

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http://dx.doi.org/10.1093/bioinformatics/bth376DOI Listing
November 2004

Optimization models for cancer classification: extracting gene interaction information from microarray expression data.

Bioinformatics 2004 Mar 22;20(5):644-52. Epub 2004 Jan 22.

GSF National Research Center for Environment and Health, Institute for Bioinformatics, Ingolstädter Landstrasse 1, D-85764 Neuherberg, Germany.

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http://dx.doi.org/10.1093/bioinformatics/btg462DOI Listing
March 2004