Alexander S Baras

Alexander S Baras

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Alexander S Baras

Alexander S Baras

Publications by authors named "Alexander S Baras"

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miRge 2.0 for comprehensive analysis of microRNA sequencing data.

BMC Bioinformatics 2018 Jul 23;19(1):275. Epub 2018 Jul 23.

Department of Pathology, Johns Hopkins University SOM, 720 Rutland Avenue/Ross Bldg. Rm 632B, Baltimore, MD, 21205, USA.

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https://bmcbioinformatics.biomedcentral.com/articles/10.1186
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http://dx.doi.org/10.1186/s12859-018-2287-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6112139PMC
July 2018

Implications of the tumor immune microenvironment for staging and therapeutics.

Mod Pathol 2018 02 1;31(2):214-234. Epub 2017 Dec 1.

Department of Pathology, The Johns Hopkins University SOM and Bloomberg-Kimmel Institute for Immunotherapy, Baltimore, MD, USA.

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http://dx.doi.org/10.1038/modpathol.2017.156DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6132263PMC
February 2018

Low levels of PSMA expression limit the utility of F-DCFPyL PET/CT for imaging urothelial carcinoma.

Ann Nucl Med 2018 Jan 24;32(1):69-74. Epub 2017 Oct 24.

The James Buchanan Brady Urological Institute and Department of Urology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.

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http://dx.doi.org/10.1007/s12149-017-1216-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5881395PMC
January 2018

The effect of limited (tertiary) Gleason pattern 5 on the new prostate cancer grade groups.

Hum Pathol 2017 05 16;63:27-32. Epub 2016 Dec 16.

The Johns Hopkins Medical Institutions, Baltimore, MD 21231, USA. Electronic address:

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http://dx.doi.org/10.1016/j.humpath.2016.12.008DOI Listing
May 2017

Assessing Cancer Progression and Stable Disease After Neoadjuvant Chemotherapy for Organ-confined Muscle-invasive Bladder Cancer.

Urology 2017 04 16;102:148-158. Epub 2017 Jan 16.

The James Buchanan Brady Urological Institute and Department of Urology, The Johns Hopkins University School of Medicine, Baltimore, MD.

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http://dx.doi.org/10.1016/j.urology.2016.10.064DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5376379PMC
April 2017

ERG and PTEN status of isolated high-grade PIN occurring in cystoprostatectomy specimens without invasive prostatic adenocarcinoma.

Hum Pathol 2016 09 14;55:117-25. Epub 2016 May 14.

Pathology, Johns Hopkins School of Medicine, Baltimore, MD 21231; Oncology, Johns Hopkins School of Medicine, Baltimore, MD 21231. Electronic address:

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http://dx.doi.org/10.1016/j.humpath.2016.04.017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4981542PMC
September 2016

Androgen receptor activity modulates responses to cisplatin treatment in bladder cancer.

Oncotarget 2016 Aug;7(31):49169-49179

Departments of Pathology and Urology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.

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http://dx.doi.org/10.18632/oncotarget.9994DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5226499PMC
August 2016

Identification and Validation of Protein Biomarkers of Response to Neoadjuvant Platinum Chemotherapy in Muscle Invasive Urothelial Carcinoma.

PLoS One 2015 31;10(7):e0131245. Epub 2015 Jul 31.

Department of Pathology, Johns Hopkins School of Medicine, Baltimore, Maryland, United States of America; Department of Urology, Johns Hopkins School of Medicine, Baltimore, Maryland, United States of America; Department of Oncology, Johns Hopkins School of Medicine, Baltimore, Maryland, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0131245PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4521868PMC
May 2016

Integrative discovery of CD98 as a melanoma biomarker.

Pigment Cell Melanoma Res 2016 May 10;29(3):385-7. Epub 2016 Apr 10.

Department of Dermatology, Division of Dermatopathology, Yale University, New Haven, CT, USA.

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http://dx.doi.org/10.1111/pcmr.12464DOI Listing
May 2016

A Retrospective Analysis of the Effect on Survival of Time from Diagnosis to Neoadjuvant Chemotherapy to Cystectomy for Muscle Invasive Bladder Cancer.

J Urol 2016 Apr 18;195(4 Pt 1):880-5. Epub 2015 Nov 18.

Department of Oncology, Johns Hopkins University Sidney Kimmel Comprehensive Cancer Center, Baltimore, Maryland; Department of Urology, Johns Hopkins University Sidney Kimmel Comprehensive Cancer Center, Baltimore, Maryland. Electronic address:

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http://dx.doi.org/10.1016/j.juro.2015.11.024DOI Listing
April 2016

Prospective Evaluation of (99m)Tc-sestamibi SPECT/CT for the Diagnosis of Renal Oncocytomas and Hybrid Oncocytic/Chromophobe Tumors.

Eur Urol 2016 Mar 18;69(3):413-6. Epub 2015 Sep 18.

The James Buchanan Brady Urological Institute and Department of Urology, Johns Hopkins University School of Medicine, Baltimore, MD, USA. Electronic address:

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http://dx.doi.org/10.1016/j.eururo.2015.08.056DOI Listing
March 2016

A benchmark for microRNA quantification algorithms using the OpenArray platform.

BMC Bioinformatics 2016 Mar 22;17:138. Epub 2016 Mar 22.

Department of Pathology, The Johns Hopkins University, 720 Rutland Ave, Baltimore, 21205, MD, USA.

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http://dx.doi.org/10.1186/s12859-016-0987-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4802579PMC
March 2016

Evolution of cellular morpho-phenotypes in cancer metastasis.

Sci Rep 2015 Dec 17;5:18437. Epub 2015 Dec 17.

Johns Hopkins Physical Sciences - Oncology Center, The Johns Hopkins University, Baltimore, Maryland 21218, USA.

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http://dx.doi.org/10.1038/srep18437DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4682070PMC
December 2015

Ki-67 index as an ancillary tool in the differential diagnosis of proliferative endometrial lesions with secretory change.

Int J Gynecol Pathol 2014 Mar;33(2):114-9

Departments of Pathology (G.T.G., A.S.B., R.J.K.) Obstetrics/Gynecology and Oncology (R.J.K.), The Johns Hopkins Medical Institutions, Baltimore, Maryland.

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http://content.wkhealth.com/linkback/openurl?sid=WKPTLP:land
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http://dx.doi.org/10.1097/PGP.0000000000000092DOI Listing
March 2014

Transcriptional signatures of Ral GTPase are associated with aggressive clinicopathologic characteristics in human cancer.

Cancer Res 2012 Jul 14;72(14):3480-91. Epub 2012 May 14.

Department of Urology, University of Virginia, Charlottesville, Virginia, USA.

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http://dx.doi.org/10.1158/0008-5472.CAN-11-3966DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3842017PMC
July 2012

Development and characterization of xenograft model systems for adenoid cystic carcinoma.

Lab Invest 2011 Oct 27;91(10):1480-90. Epub 2011 Jun 27.

Department of Pathology, University of Virginia, Charlottesville, VA 22908, USA.

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http://dx.doi.org/10.1038/labinvest.2011.105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4151120PMC
October 2011

Loss of VOPP1 overexpression in squamous carcinoma cells induces apoptosis through oxidative cellular injury.

Lab Invest 2011 Aug 25;91(8):1170-80. Epub 2011 Apr 25.

Department of Pathology, University of Virginia, Charlottesville, VA 22908, USA.

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http://dx.doi.org/10.1038/labinvest.2011.70DOI Listing
August 2011

PICquant: a quantitative platform to measure differential peptide abundance using dual-isotopic labeling with 12C6- and 13C6-phenyl isocyanate.

Anal Chem 2011 Feb 30;83(3):856-65. Epub 2010 Dec 30.

Collaborative Mass Spectrometry Facility, Department of Pathology, University of Virginia, Charlottesville, Virginia 22908-0214, USA.

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http://dx.doi.org/10.1021/ac102461eDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3079250PMC
February 2011

The COXEN principle: translating signatures of in vitro chemosensitivity into tools for clinical outcome prediction and drug discovery in cancer.

Cancer Res 2010 Mar 16;70(5):1753-8. Epub 2010 Feb 16.

Department of Molecular Physiology, University of Virginia, Charlottesville, Virginia 22908, USA.

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http://dx.doi.org/10.1158/0008-5472.CAN-09-3562DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2831138PMC
March 2010

Expression of ral GTPases, their effectors, and activators in human bladder cancer.

Clin Cancer Res 2007 Jul;13(13):3803-13

Department of Molecular Physiology, University of Virginia, Charlottesville, Virginia 22908, USA.

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http://dx.doi.org/10.1158/1078-0432.CCR-06-2419DOI Listing
July 2007

Concurrent loss of heterozygosity and copy number analysis in adenoid cystic carcinoma by SNP genotyping arrays.

Lab Invest 2007 May 19;87(5):430-9. Epub 2007 Mar 19.

Department of Pathology, University of Virginia, Charlottesville, VA 22908, USA.

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http://dx.doi.org/10.1038/labinvest.3700536DOI Listing
May 2007