Publications by authors named "Alexander Martínez-Fundichely"

9Publications

CNCDatabase: a database of non-coding cancer drivers.

Nucleic Acids Res 2021 01;49(D1):D1094-D1101

Meyer Cancer Center, Weill Cornell Medicine, New York, NY 10065, USA.

View Article and Find Full Text PDF
January 2021

DeepMILO: a deep learning approach to predict the impact of non-coding sequence variants on 3D chromatin structure.

Genome Biol 2020 03 26;21(1):79. Epub 2020 Mar 26.

Meyer Cancer Center, Weill Cornell Medicine, New York, NY, 10065, USA.

View Article and Find Full Text PDF
March 2020

Passenger Mutations in More Than 2,500 Cancer Genomes: Overall Molecular Functional Impact and Consequences.

Cell 2020 03 20;180(5):915-927.e16. Epub 2020 Feb 20.

Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT 06520, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA; Department of Computer Science, Yale University, New Haven, CT 06511, USA. Electronic address:

View Article and Find Full Text PDF
March 2020

Identification of Cancer Drivers at CTCF Insulators in 1,962 Whole Genomes.

Cell Syst 2019 05 8;8(5):446-455.e8. Epub 2019 May 8.

Meyer Cancer Center, Weill Cornell Medicine, New York, NY 10065, USA; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY 10065, USA; Institute for Computational Biomedicine, Weill Cornell Medicine, New York, NY 10021, USA; Caryl and Israel Englander Institute for Precision Medicine, New York Presbyterian Hospital, Weill Cornell Medicine, New York, NY 10065, USA. Electronic address:

View Article and Find Full Text PDF
May 2019

Validation and genotyping of multiple human polymorphic inversions mediated by inverted repeats reveals a high degree of recurrence.

PLoS Genet 2014 Mar 20;10(3):e1004208. Epub 2014 Mar 20.

Institut de Biotecnologia i de Biomedicina, Universitat Autònoma de Barcelona, Bellaterra (Barcelona), Spain; Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain.

View Article and Find Full Text PDF
March 2014

InvFEST, a database integrating information of polymorphic inversions in the human genome.

Nucleic Acids Res 2014 Jan 18;42(Database issue):D1027-32. Epub 2013 Nov 18.

Institut de Biotecnologia i de Biomedicina, Universitat Autònoma de Barcelona, Bellaterra, Barcelona, Spain, Departament de Genètica i de Microbiologia, Universitat Autònoma de Barcelona, Bellaterra, Barcelona, Spain and Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain.

View Article and Find Full Text PDF
January 2014