Alex S Nord

Alex S Nord

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Alex S Nord

Alex S Nord

Publications by authors named "Alex S Nord"

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Genomic Resolution of DLX-Orchestrated Transcriptional Circuits Driving Development of Forebrain GABAergic Neurons.

Cell Rep 2019 Aug;28(8):2048-2063.e8

Nina Ireland Laboratory of Developmental Neurobiology, Department of Psychiatry, UCSF Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA 94158, USA; Development and Stem Cell Biology Program, University of California, San Francisco, San Francisco, CA 94158, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2019.07.022DOI Listing
August 2019

Common CHD8 Genomic Targets Contrast With Model-Specific Transcriptional Impacts of Haploinsufficiency.

Front Mol Neurosci 2018 14;11:481. Epub 2019 Jan 14.

Department of Psychiatry and Behavioral Sciences, University of California, Davis, Davis, CA, United States.

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http://dx.doi.org/10.3389/fnmol.2018.00481DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6339895PMC
January 2019

Dlx1 and Dlx2 Promote Interneuron GABA Synthesis, Synaptogenesis, and Dendritogenesis.

Cereb Cortex 2018 11;28(11):3797-3815

Department of Psychiatry, Neuroscience Program and the Nina Ireland Laboratory of Developmental Neurobiology, University of California San Francisco, San Francisco, CA, USA.

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http://dx.doi.org/10.1093/cercor/bhx241DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6188538PMC
November 2018

Neonatal Tbr1 Dosage Controls Cortical Layer 6 Connectivity.

Neuron 2018 11 11;100(4):831-845.e7. Epub 2018 Oct 11.

Nina Ireland Laboratory of Developmental Neurobiology, Department of Psychiatry, and Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA 94143, USA; Department of Psychiatry, Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA 94143, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S08966273183082
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http://dx.doi.org/10.1016/j.neuron.2018.09.027DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6250594PMC
November 2018

Genomic analysis of transcriptional networks directing progression of cell states during MGE development.

Neural Dev 2018 09 14;13(1):21. Epub 2018 Sep 14.

Department of Psychiatry, UCSF Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, 94143, USA.

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http://dx.doi.org/10.1186/s13064-018-0119-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6138899PMC
September 2018

Transcriptional Networks Controlled by NKX2-1 in the Development of Forebrain GABAergic Neurons.

Neuron 2016 Sep;91(6):1260-1275

Department of Psychiatry, University of California, San Francisco, San Francisco, CA 94143, USA. Electronic address:

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http://dx.doi.org/10.1016/j.neuron.2016.08.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5319854PMC
September 2016

52 Genetic Loci Influencing Myocardial Mass.

Authors:
Pim van der Harst Jessica van Setten Niek Verweij Georg Vogler Lude Franke Matthew T Maurano Xinchen Wang Irene Mateo Leach Mark Eijgelsheim Nona Sotoodehnia Caroline Hayward Rossella Sorice Osorio Meirelles Leo-Pekka Lyytikäinen Ozren Polašek Toshiko Tanaka Dan E Arking Sheila Ulivi Stella Trompet Martina Müller-Nurasyid Albert V Smith Marcus Dörr Kathleen F Kerr Jared W Magnani Fabiola Del Greco M Weihua Zhang Ilja M Nolte Claudia T Silva Sandosh Padmanabhan Vinicius Tragante Tõnu Esko Gonçalo R Abecasis Michiel E Adriaens Karl Andersen Phil Barnett Joshua C Bis Rolf Bodmer Brendan M Buckley Harry Campbell Megan V Cannon Aravinda Chakravarti Lin Y Chen Alessandro Delitala Richard B Devereux Pieter A Doevendans Anna F Dominiczak Luigi Ferrucci Ian Ford Christian Gieger Tamara B Harris Eric Haugen Matthias Heinig Dena G Hernandez Hans L Hillege Joel N Hirschhorn Albert Hofman Norbert Hubner Shih-Jen Hwang Annamaria Iorio Mika Kähönen Manolis Kellis Ivana Kolcic Ishminder K Kooner Jaspal S Kooner Jan A Kors Edward G Lakatta Kasper Lage Lenore J Launer Daniel Levy Alicia Lundby Peter W Macfarlane Dalit May Thomas Meitinger Andres Metspalu Stefania Nappo Silvia Naitza Shane Neph Alex S Nord Teresa Nutile Peter M Okin Jesper V Olsen Ben A Oostra Josef M Penninger Len A Pennacchio Tune H Pers Siegfried Perz Annette Peters Yigal M Pinto Arne Pfeufer Maria Grazia Pilia Peter P Pramstaller Bram P Prins Olli T Raitakari Soumya Raychaudhuri Ken M Rice Elizabeth J Rossin Jerome I Rotter Sebastian Schafer David Schlessinger Carsten O Schmidt Jobanpreet Sehmi Herman H W Silljé Gianfranco Sinagra Moritz F Sinner Kamil Slowikowski Elsayed Z Soliman Timothy D Spector Wilko Spiering John A Stamatoyannopoulos Ronald P Stolk Konstantin Strauch Sian-Tsung Tan Kirill V Tarasov Bosco Trinh Andre G Uitterlinden Malou van den Boogaard Cornelia M van Duijn Wiek H van Gilst Jorma S Viikari Peter M Visscher Veronique Vitart Uwe Völker Melanie Waldenberger Christian X Weichenberger Harm-Jan Westra Cisca Wijmenga Bruce H Wolffenbuttel Jian Yang Connie R Bezzina Patricia B Munroe Harold Snieder Alan F Wright Igor Rudan Laurie A Boyer Folkert W Asselbergs Dirk J van Veldhuisen Bruno H Stricker Bruce M Psaty Marina Ciullo Serena Sanna Terho Lehtimäki James F Wilson Stefania Bandinelli Alvaro Alonso Paolo Gasparini J Wouter Jukema Stefan Kääb Vilmundur Gudnason Stephan B Felix Susan R Heckbert Rudolf A de Boer Christopher Newton-Cheh Andrew A Hicks John C Chambers Yalda Jamshidi Axel Visel Vincent M Christoffels Aaron Isaacs Nilesh J Samani Paul I W de Bakker

J Am Coll Cardiol 2016 09;68(13):1435-1448

Department of Medical Genetics, University Medical Center Utrecht, Utrecht, the Netherlands; Department of Epidemiology, University Medical Center Utrecht, Utrecht, the Netherlands.

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http://dx.doi.org/10.1016/j.jacc.2016.07.729DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5478167PMC
September 2016

Genomic Views of Transcriptional Enhancers: Essential Determinants of Cellular Identity and Activity-Dependent Responses in the CNS.

J Neurosci 2015 Oct;35(41):13819-26

Department of Pathology and Cell Biology, Columbia University College of Physicians and Surgeons, New York, New York 10027.

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http://dx.doi.org/10.1523/JNEUROSCI.2622-15.2015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4604220PMC
October 2015

Learning about mammalian gene regulation from functional enhancer assays in the mouse.

Authors:
Alex S Nord

Genomics 2015 Sep 14;106(3):178-184. Epub 2015 Jun 14.

Center for Neuroscience, Department of Neurobiology, Physiology and Behavior, College of Biological Sciences, University of California, Davis, CA, USA; Department of Psychiatry and Behavioral Sciences, School of Medicine, University of California, Davis, CA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ygeno.2015.06.008DOI Listing
September 2015

Genomic perspectives of transcriptional regulation in forebrain development.

Neuron 2015 Jan;85(1):27-47

Department of Psychiatry, Rock Hall, University of California, San Francisco, San Francisco, CA 94158-2324, USA.

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http://dx.doi.org/10.1016/j.neuron.2014.11.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4438709PMC
January 2015

Tissue-specific RNA expression marks distant-acting developmental enhancers.

PLoS Genet 2014 Sep 4;10(9):e1004610. Epub 2014 Sep 4.

Lawrence Berkeley National Laboratory, Berkeley, California, United States of America; U.S. Department of Energy Joint Genome Institute, Walnut Creek, California, United States of America; School of Natural Sciences, University of California, Merced, California, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1004610DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4154669PMC
September 2014

Tissue-specific SMARCA4 binding at active and repressed regulatory elements during embryogenesis.

Genome Res 2014 Jun 21;24(6):920-9. Epub 2014 Apr 21.

Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA; US Department of Energy Joint Genome Institute, Walnut Creek, California 94598, USA;

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http://dx.doi.org/10.1101/gr.168930.113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4032856PMC
June 2014

Transcriptional regulation of enhancers active in protodomains of the developing cerebral cortex.

Neuron 2014 Jun 8;82(5):989-1003. Epub 2014 May 8.

Department of Psychiatry, Program in Neuroscience, Rock Hall, University of California at San Francisco, San Francisco, CA 94158-2324, USA. Electronic address:

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http://dx.doi.org/10.1016/j.neuron.2014.04.014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4104757PMC
June 2014

Function-based identification of mammalian enhancers using site-specific integration.

Nat Methods 2014 May 23;11(5):566-71. Epub 2014 Mar 23.

1] Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA. [2] US Department of Energy Joint Genome Institute, Walnut Creek, California, USA.

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http://dx.doi.org/10.1038/nmeth.2886DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4008384PMC
May 2014

Rapid and pervasive changes in genome-wide enhancer usage during mammalian development.

Cell 2013 Dec;155(7):1521-31

Genomics Division, MS 84-171, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; U.S. Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA; School of Natural Sciences, University of California, Merced, CA 95343, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2013.11.033DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3989111PMC
December 2013

Accurate and exact CNV identification from targeted high-throughput sequence data.

BMC Genomics 2011 Apr 12;12:184. Epub 2011 Apr 12.

Department of Genome Sciences, University of Washington, Seattle, 98195-7720, USA.

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http://dx.doi.org/10.1186/1471-2164-12-184DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3088570PMC
April 2011

Is cardiac diagnosis a predictor of neurodevelopmental outcome after cardiac surgery in infancy?

J Thorac Cardiovasc Surg 2010 Dec 15;140(6):1230-7. Epub 2010 Oct 15.

Division of Cardiothoracic Surgery, Children's Hospital of Philadelphia, Philadelphia, Pa 19104, USA.

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http://dx.doi.org/10.1016/j.jtcvs.2010.07.069DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3278908PMC
December 2010

Comparison of tagging single-nucleotide polymorphism methods in association analyses.

BMC Proc 2007 18;1 Suppl 1:S6. Epub 2007 Dec 18.

Department of Health Sciences Research, Mayo Clinic College of Medicine, 200 First Street SW, Rochester, MN 55905, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2367496PMC
http://dx.doi.org/10.1186/1753-6561-1-s1-s6DOI Listing
December 2009

Perioperative stroke in infants undergoing open heart operations for congenital heart disease.

Ann Thorac Surg 2009 Sep;88(3):823-9

Division of Pediatric Cardiology, Department of Pediatrics, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania 19104, USA.

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http://dx.doi.org/10.1016/j.athoracsur.2009.03.030DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2840405PMC
September 2009

Predictors of impaired neurodevelopmental outcomes at one year of age after infant cardiac surgery.

Eur J Cardiothorac Surg 2009 Jul 25;36(1):40-7. Epub 2009 Apr 25.

Division of Pediatric Cardiothoracic Surgery, The Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA.

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http://dx.doi.org/10.1016/j.ejcts.2009.02.047DOI Listing
July 2009

Neurodevelopmental outcomes after staged palliation for hypoplastic left heart syndrome.

Pediatrics 2008 Mar;121(3):476-83

Department of Pediatrics, Division of Cardiology, Children's Hospital of Philadelphia and University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania 19104, USA.

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http://dx.doi.org/10.1542/peds.2007-1282DOI Listing
March 2008

Genetic factors are important determinants of neurodevelopmental outcome after repair of tetralogy of Fallot.

J Thorac Cardiovasc Surg 2008 Jan;135(1):91-7

Division of Cardiology, The Children's Medical Center at Dallas, Dallas, Tex 75235, USA.

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http://dx.doi.org/10.1016/j.jtcvs.2007.04.074DOI Listing
January 2008

Patient characteristics are important determinants of neurodevelopmental outcome at one year of age after neonatal and infant cardiac surgery.

J Thorac Cardiovasc Surg 2007 May 19;133(5):1344-53, 1353.e1-3. Epub 2007 Mar 19.

Division of Cardiothoracic Surgery, The Cardiac Center at The Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA.

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http://dx.doi.org/10.1016/j.jtcvs.2006.10.087DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2844117PMC
May 2007